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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0002500 |
| Transcript ID | LotjaGi2g1v0002500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Organic cation/carnitine transporter; TAIR: AT1G16390.1 organic cation/carnitine transporter 3; Swiss-Prot: sp|Q9SA38|OCT3_ARATH Organic cation/carnitine transporter 3; TrEMBL-Plants: tr|G7LG23|G7LG23_MEDTR Organic cation/carnitine transporter; Found in the gene: LotjaGi2g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1235205..1237029) extracted from Lotus japonicus Gifu genome v1.2.
CCATCAACCACCATAATCTGATTTGAAATTCTCCTTTTGAGGAAGCATCATCATGTGTCTCAAAACACAACACATAGTTG AAGTAGAGGCAGACATTCAAACGGAGGTCGCCTCCGTTCAAACAAGTGCAGTTGCTGAATCTCACTCCACTGATCAAGAA AGAAAACTGATGCAGTCATGGGACGATATGGTAGAAAAAAGCTTAAGAAACTTCGGGTGGATGGAGTTCCTGCAAGCTGT GCTCGTGGCCGTCGCAATGTTCTTTGATGCACAACAATCCTTCATCAGCATCTACACAGACAACTACCCCACATGGCATT GTACAAACCACACCATGTGCTCCTCTTCCTCTGACATTTGCAAAATCCCCAAATCCTCTTGGTCATGGGACTCACACCCT TCCATGACCATCATATCCCATTGGAGCCTTGAATGCGCTAGCACCTTTGTCACCGGTTTACCCCAGTCTTCCTTCTTCAT AGGAGGCCTTCTGGGATCCTCTATTCTCGCAGCCTTAGCTGATTCATCAGTGGGGAGAAAAAACATGCTTGTTCTCTCTT GTGTTTTAATGTCAATCACCTCCACACTCATCATCTTCTCCCCCAACATATGGGTCTACTCTGCCTTGAAGTTCTTGATC GGCTTCTGGCGTTCGTCCATTGGGACCTCTGTCTTGGTTTTGCTCACGGAGAATGTGAGTGTAGAGTGGAGATTCAGCGT GGGGACTGTGGAGTATTTCACCTTCACGATTGGATACATGTCTCTTTCAGGTATAGCTTATGCCACCAAAAGTCTCTCTT GGAGATTTCTTTACCTCTACACTTCACTCCCTGCTCTGTTATACTCTATTCTTGCTTATCTCTTCATAAACGAATCCCCC AAGTGGCTTCTCATGCACGGTCGAGTCAAAGAAGCCATGAGAATTCTTAAAGGAGTATCCTTACCTGAAAACGATGCTAA TTACCTCACAAGCTTCAAAACAAAAGAAAATGTTTCATTTTTTCAACTTTACTCTTCAATAGTAGAGTTGTTCAAGAGAC GTTGGGCTCTTACGAGAATGGTGGCGACCATGGTACTTGGAATTGGTGTTGGGTCGGTGTATTTTGCCTTGGCCTTAGCG GTGGAAAACATGGGATTTAACATTTATTTGGCTGTGGTTTTCAGTGCTCTGATGGAAATCCCTTCTTGCATAGTTGCCTA TTTCTTGGAAAACTTCAGAAGAAAGCCATCTATTATTGTTTTCTCGCTATTGTGTGGGATATGTTGCCTGTTGTGTGTTG CCATTGGTGATAAGGCACCAGAAGCCAAAGTGGGGCTAGCAATAGTAGCCTTTTTTGGTGCTTGTGTAGCCTATTTTGTC TTCGTCATTTACATCATTGAGTTGTTTCCCACATGTGTAAGGTTCACTACAACATCATTGGTGAGACAAGCTATTACATT CGGTTGCATTTTCTGTCCATTTTTTATATCTGCTGGGAGGAAAAATAACATTTATTCTTATGGGGTGTTCGGGCTTGTCA TAATGTGCTCCAATTTGACATTGTTTGGCTTGCCAGAGACCATGGGGATAGTACTCTGTGACACCATGAATCAACAGGAG GAAAAGGAAACGTACTTGAGTAAACCGAAGACCAAACAAGTCGCTATTTGTGAGGCCATGGATCTACAAGAGGAAAAAGG AGACTTTTTTTTATTGACGTAGAGTAAATATGAGACTTGTCTGTGTGAGGCACAGACAAGTTCATCCAAACTCATTGATG TTTGTCTGTCACCTGCTAATAATCATAATATAATAATAATAATTCACTTGAAGTTTCCATTAAAA
CDS sequence (LotjaGi2g1v0002500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCTCAAAACACAACACATAGTTGAAGTAGAGGCAGACATTCAAACGGAGGTCGCCTCCGTTCAAACAAGTGCAGT TGCTGAATCTCACTCCACTGATCAAGAAAGAAAACTGATGCAGTCATGGGACGATATGGTAGAAAAAAGCTTAAGAAACT TCGGGTGGATGGAGTTCCTGCAAGCTGTGCTCGTGGCCGTCGCAATGTTCTTTGATGCACAACAATCCTTCATCAGCATC TACACAGACAACTACCCCACATGGCATTGTACAAACCACACCATGTGCTCCTCTTCCTCTGACATTTGCAAAATCCCCAA ATCCTCTTGGTCATGGGACTCACACCCTTCCATGACCATCATATCCCATTGGAGCCTTGAATGCGCTAGCACCTTTGTCA CCGGTTTACCCCAGTCTTCCTTCTTCATAGGAGGCCTTCTGGGATCCTCTATTCTCGCAGCCTTAGCTGATTCATCAGTG GGGAGAAAAAACATGCTTGTTCTCTCTTGTGTTTTAATGTCAATCACCTCCACACTCATCATCTTCTCCCCCAACATATG GGTCTACTCTGCCTTGAAGTTCTTGATCGGCTTCTGGCGTTCGTCCATTGGGACCTCTGTCTTGGTTTTGCTCACGGAGA ATGTGAGTGTAGAGTGGAGATTCAGCGTGGGGACTGTGGAGTATTTCACCTTCACGATTGGATACATGTCTCTTTCAGGT ATAGCTTATGCCACCAAAAGTCTCTCTTGGAGATTTCTTTACCTCTACACTTCACTCCCTGCTCTGTTATACTCTATTCT TGCTTATCTCTTCATAAACGAATCCCCCAAGTGGCTTCTCATGCACGGTCGAGTCAAAGAAGCCATGAGAATTCTTAAAG GAGTATCCTTACCTGAAAACGATGCTAATTACCTCACAAGCTTCAAAACAAAAGAAAATGTTTCATTTTTTCAACTTTAC TCTTCAATAGTAGAGTTGTTCAAGAGACGTTGGGCTCTTACGAGAATGGTGGCGACCATGGTACTTGGAATTGGTGTTGG GTCGGTGTATTTTGCCTTGGCCTTAGCGGTGGAAAACATGGGATTTAACATTTATTTGGCTGTGGTTTTCAGTGCTCTGA TGGAAATCCCTTCTTGCATAGTTGCCTATTTCTTGGAAAACTTCAGAAGAAAGCCATCTATTATTGTTTTCTCGCTATTG TGTGGGATATGTTGCCTGTTGTGTGTTGCCATTGGTGATAAGGCACCAGAAGCCAAAGTGGGGCTAGCAATAGTAGCCTT TTTTGGTGCTTGTGTAGCCTATTTTGTCTTCGTCATTTACATCATTGAGTTGTTTCCCACATGTGTAAGGTTCACTACAA CATCATTGGTGAGACAAGCTATTACATTCGGTTGCATTTTCTGTCCATTTTTTATATCTGCTGGGAGGAAAAATAACATT TATTCTTATGGGGTGTTCGGGCTTGTCATAATGTGCTCCAATTTGACATTGTTTGGCTTGCCAGAGACCATGGGGATAGT ACTCTGTGACACCATGAATCAACAGGAGGAAAAGGAAACGTACTTGAGTAAACCGAAGACCAAACAAGTCGCTATTTGTG AGGCCATGGATCTACAAGAGGAAAAAGGAGACTTTTTTTTATTGACGTAG
Protein sequence (LotjaGi2g1v0002500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLKTQHIVEVEADIQTEVASVQTSAVAESHSTDQERKLMQSWDDMVEKSLRNFGWMEFLQAVLVAVAMFFDAQQSFISI YTDNYPTWHCTNHTMCSSSSDICKIPKSSWSWDSHPSMTIISHWSLECASTFVTGLPQSSFFIGGLLGSSILAALADSSV GRKNMLVLSCVLMSITSTLIIFSPNIWVYSALKFLIGFWRSSIGTSVLVLLTENVSVEWRFSVGTVEYFTFTIGYMSLSG IAYATKSLSWRFLYLYTSLPALLYSILAYLFINESPKWLLMHGRVKEAMRILKGVSLPENDANYLTSFKTKENVSFFQLY SSIVELFKRRWALTRMVATMVLGIGVGSVYFALALAVENMGFNIYLAVVFSALMEIPSCIVAYFLENFRRKPSIIVFSLL CGICCLLCVAIGDKAPEAKVGLAIVAFFGACVAYFVFVIYIIELFPTCVRFTTTSLVRQAITFGCIFCPFFISAGRKNNI YSYGVFGLVIMCSNLTLFGLPETMGIVLCDTMNQQEEKETYLSKPKTKQVAICEAMDLQEEKGDFFLLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 53 | 53 | - | – | |
| PANTHER | 33 | 519 | 487 | 6.6E-219 | – | |
| PANTHER | 33 | 519 | 487 | 6.6E-219 | – | |
| TMHMM | 54 | 71 | 18 | - | – | |
| Phobius | 54 | 71 | 18 | - | – | |
| ProSiteProfiles | 61 | 517 | 457 | 15.312 | ||
| Phobius | 72 | 138 | 67 | - | – | |
| CDD | 100 | 501 | 402 | 1.18841E-118 | – | |
| Gene3D | 109 | 512 | 404 | 6.5E-52 | – | |
| Pfam | 114 | 508 | 395 | 9.2E-25 | ||
| SUPERFAMILY | 129 | 505 | 377 | 1.96E-39 | ||
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 139 | 156 | 18 | - | – | |
| Phobius | 157 | 164 | 8 | - | – | |
| Phobius | 165 | 188 | 24 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 189 | 193 | 5 | - | – | |
| Phobius | 194 | 211 | 18 | - | – | |
| Phobius | 212 | 222 | 11 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 223 | 245 | 23 | - | – | |
| Phobius | 246 | 250 | 5 | - | – | |
| TMHMM | 250 | 272 | 23 | - | – | |
| Phobius | 251 | 272 | 22 | - | – | |
| Phobius | 273 | 335 | 63 | - | – | |
| Phobius | 336 | 356 | 21 | - | – | |
| TMHMM | 336 | 355 | 20 | - | – | |
| Phobius | 357 | 361 | 5 | - | – | |
| TMHMM | 362 | 384 | 23 | - | – | |
| Phobius | 362 | 385 | 24 | - | – | |
| Phobius | 386 | 393 | 8 | - | – | |
| TMHMM | 394 | 411 | 18 | - | – | |
| Phobius | 394 | 412 | 19 | - | – | |
| Phobius | 413 | 423 | 11 | - | – | |
| TMHMM | 420 | 442 | 23 | - | – | |
| Phobius | 424 | 444 | 21 | - | – | |
| Phobius | 445 | 455 | 11 | - | – | |
| Phobius | 456 | 474 | 19 | - | – | |
| TMHMM | 457 | 474 | 18 | - | – | |
| Phobius | 475 | 479 | 5 | - | – | |
| Phobius | 480 | 500 | 21 | - | – | |
| TMHMM | 481 | 500 | 20 | - | – | |
| Phobius | 501 | 549 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0002500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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