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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0002600 |
| Transcript ID | LotjaGi2g1v0002600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G24130.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q4PSN0|PME29_ARATH Probable pectinesterase 29; TrEMBL-Plants: tr|K7K766|K7K766_SOYBN Pectinesterase; Found in the gene: LotjaGi2g1v0002600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1263004..1268122) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAATAGGACGCTGTGATTGGAAATCCATCTTACACCTTCCTCCTCAAATTAGGCATTTCCCCTTTTATAACTTTCCC TCCAAAACTTTGTCTTTAAATACAGATCCATAACTTCCTGATTTCATGAAATGATTGCATACTAATTGTGGCTCATCAAA TCTTGTGATCCCCTTCCTTTTTCTTCTTGGAGCAATAAACATAACCTGACCGTTTTTTCGTAGTCTCCACAACACTCCGA TCCAACTATTGCTCTTGTTGTTCTATTTGAGATCCATCATCATGTTTCTTCGTTTGTGCTTCTATGCATGTCTCTTTCTC CTATTGGGGTTGAGATCAGAACTTGCCAATGCTCAGTTTTTCAGAAAAGTAGGAGACAAGTTCCTTTCTTACTCGAAAAT AGTTGTAGATCCATCAGGGCATGGAAACTTCTCTACCATACAATCTGCCATTGATTCAGTGCCTTCCAACAATAGGTATT GGGTTTCCATCAAGGTGAAGGCAGGTACCTACAGGTAATACTAATAGTAGATTCCGGTGATTTTATTTTTTCTCTGTATC AATTCTAGCCTTCGGAGCTTACTCACAAAAACTTCAACCCAAGAATTGATTTTACCTTAACGATCAATCTTACCAGAACT AGGTGTTAAATCAAGTATTATAGTCCATGATGAAAAATAATTGCTTTTGTTTTGATTTAGACATTCGATATATAATTTAG ATTGCAATGTAATTCTATCCCTCAAATTTCTGAATGGACGACTAACAAAGATGTTTTATTTTGTGTTTGTTTATTTCAGA GAAAAAGTGAATATTCCTTATGATAAGCCTTACATCATATTGAAAGGTGAAGGGAAAAGGAAAACTCTTGTTGAATGGGG CGACCATAATTCAACCGCACAGAGCCCAACTTTCACAGCCGTGGCAGATAATGTTGTAGTCAAATGCATGAGCTTCAGGG TGAGAATTCTTCTATTAGCCCTTTTTACTTTTCAGGAATGGACAAATTGTTTCTTTTTTATTTCCCTAGTTTTTTTATTA TCAATAAATACTGCTTTGTTTGTCCATTTTTTTTTTACAATTGTTCTTTATATTTCTTTTGGTTTTTTATGATATTTTTC CATATTTAAGAAATACTACAATGAAAAAGAATAAGAATATAAGATGTAGAAGAAAGAAGAGATAAGCAAATAAACATTTT TTTCAAGGAAAAGCTTCATAAAAATATATATTTTTCACGAGTTGCACCTATATTCGATTGTCCTTAATGAAACAGTTATC TTTTTACACCCATTTCCCCTTGCATGTTCTCCACTTCCCCATGTATTTGGTGACCATCATCGTCTTTGGTTATTGCTACT TTTCCCAATTTGCTTATTTTCGAGTAAAGAAAAATATTTGCTCATTTTCTGTCAATATAATTAAGGAAATGCTCTTAATT GTAATGTTTGTTAGAAGGAAATAAACAAAAGGATCAGCAGTTTTAGTTTCAAATTATATATAGATTCTATTTTTTTTGCT CGTGGTAGACTGGTAGGTCCCATCACGACACACGAAAATCTCGAATTATTTGACCAAACTACTGCGTTGTGGTTTTTAAT GTTCGGTTGATCGAGTTCGTTCAAAATCCATTTCTAATTTCTTTGACTTGACTCAATGCTATATTTGAATATTTTAATTT CATTTTAGGAAATTATTTTGTTTCTGGCAAATAATTAGTATTAGTTGATTAGGTAATAACCAATCAAAGATTATGCCCGT AAAAATAACCAATCAAAGATCATGGATGATTTCCTAAAGAAATATGATGACAGGGAAATATGATCAACCTATCTCATGAT TTTACCTAGCGGATTTTATTGGATTTCACTCTTTCTAGATGAACCCCGCAAATAGCTGGTTTTTTTGTTGTTGTCGTCTT AACCAAGGTATCCCACAGTTGTACAGCTGTGAGACTAATTCATCGTCCCGCGATCAGCGCACTTAGCGGTAGGGGGCTGG CCAATGAGTTTTCTTTATTCACAAGAGTTGGGATTCGAACCCCAAGTACTTGCTTAAAGGATGAAGTTCTGAACCACTAC ACCAACTCAGTTGGTTAAATAGCTGACTTTTTATGTTTTTTGTGTGTTTTGGATTAGTGTAAATAAGTTTTGTCATGAGA ACCAATCAAATTATGTTACATAGAACCAGATAGTTATATCTATTTTCTTAATTTATATTGAAATAAATAAATTTCTCAAA GGAAAGAAATCAATTAGATGCTTGTGTATATAAATTTAAGACATAATTTCGGTACGCTTTTAAAATTAGAGAGTTTGAAA TCCTTCTATTCATAATTTAGAATTTAAAAAGTGCAATTTATAAAAATTAGCTGTAAATAAAAAGACATGACAAAAAGGTA TGAAATCCTTTATTTTTTCCCTTTGATTATGTATAGAATCTCTGCTTTGTTTTGTAGCTCTTTTTATATTAATAATTAAA AAGTGTGTTTGTGCTCTAAAATTGGTGTTGTAATTAATGTGGAGCAGAATTCATACAATAATCCAATAAACAATAATCCC AAGAGGCCTGCAGTTGCTGCAATGGTGAGCGGAGATAAGTCTTACTTTTTAAGAGTTGGGTTCTTTGGCTTGCAAGACAC TTTGTGGGATGATAGTGGAAGACATTACTACAAGCTTTGTACCATTCAAGGTGCTGTTGATTTTATCTTTGGTGCAGGAC AGTCTTTGTTTGAGGTAATAATATGTTGTCTTTAATTTGTTTAGTGCAGTGTATCATTTTATTGGTACGGTCATCATCAT GCTTGCACAAAAATAATGATCCATGTTAAGAAAAGGAAGAATAAAATATTCATCAAAAAAATTAAAATCCATTACCAATT TTATGTGTGGTATATATGTTAGAATTTAAGGGGTTATTGAAGAAGAAAATCAACATTAAATAGAGCGTTCTTATATCAAA CTATCAAGAGAATATAAATATAGCTAGAGAATATTGTTTGATTGACACTGCAAATACATTTATGTTGATTTGCTATGAAT TGCTTTTGAGTTGAGTGTAGAGAATATTATTATATGTAGGCAGTGCCAACCTCTGCACTCTATTGAATTGCTTTTGAGTT GAGTGTGGTAATGGCTCGTGTCTTGGAGTTTCAGATACGTTCTGGTCCCTTTGCTACTCCCCGGTTCTGTTTTGGGTGTA AAGTCATGCTACTTTTCTATTTTTGCTCTAGCTATCGGTTTTAGTGTGCTATTTTTGCTGCTAGTGGTTTTGAGAGGAAG CGAGCACTGTTTACTTTGTCTGATATTTATCTCTTGTGCTCTCCTCTCTCAGTCTTGTTTGTATATTCCACTTTCTTTTG TTTCTTTTCTACATGGATTGGTTGAAAGTTGAAATACTCCTAATATTTCATTTATATACAATTTTGCTTTTTTTAAATGT AAATACATGACGAAAAAAATAGTGAAATTAAAGATACAACAATGATACATTCACACTTCATTTTTTATATTCCTCATTTT CATTCATTTATATTTTTATCTCTTTCATTTTATCATCTATTGCATCTGATGTTTTTTCTCTCTTACTTTTTCTTTTCTTC TTATCTCTCTTCATTCCATCACAAAGAAAGGTGTGAAAGTAACATTATTCATTAGCGATATGGTCGAAATAAAAAAGAGA TAGGAAGGGAGAACAAGGAAAAACGAGATGAAAGGAAAAAATGCAATGTAATATGAATTAATCAATACTTAAAAATAGAG TTAAGAGAATGGAAGTGTATCAGAGTGACTTGATTAAGAAATCAGAACCAATATCTAGAGAACTAGTCCAGATTGATCGT TAACCTTTGATCATTGATTAATTATAAATGTAAATATATATCTTTTATTGTTGTATAATTGGTTAATTAAATATTTATTT TTGCAGAGGTGCTCCATATCAGTTATTGGTGCAGCCTTAGAACCAGGATTTCCTGGTTATATAACAGCACAAGGGAGAAC AGAACCAAACGAGGGAAGTGGGTTTGTTTTCAAAGATTGCCACGTATTTGGAAATGGGACAACCTACTTGGGTAGGCCAT GGAGAGGTTATGCTAGAGTCTTGTTCTACAACACCAACATGTCCAGCATTGTTCAACCTGGTGGCTGGGAGGCTTGGAAT TTCGTTGGACATGAGTAAGTTCCCTCTTTCTCTTAATTAGTATTGTTGATTAAGAATTGGAATTTAACCAAACATATGTA TTATTGCTATCAAGTTTTAAATTGTGATTCTTGAACTTGCAAAAAATTATTCACAAGTCCCGTTTTCAACCGCAATGTAA TGCTAGGTTTTAGAGTACCCACATCAGCATCACGACCTCAATTCGAGACGCATCAACATGCATTTATATGTTATTGTGCA ACATTGTGGCAACCGTGGATCCGCAATTTTAAACCCACAATGAGCTGAAAAACTTTGAACTTGTAGTCACAATTGCAAAA CTTAAAACCATGCTCATATTTAGAAGGGCACAACATTGAGTTCTTTTCCATTTTTGTCCTTTATTGGTTTCTTTAGCTAC TCTGTTTTAGGGGATTCATGATGTTCTGTTATTTAAATTTTCAGGGATGGCATAACATTTGCTGAGCATGGCAATTTCGG GCCGGGTTCTGACACGTCTAAGCGAGTGAGTTGGGCTAAGAAGTTGGATTTGACTACTGTTTATAAGATGGCAAGTTTGA ACTTCATTAACAACCAAGAATGGAGTCAGAACCAAATGTTATTATAAAGATGCAAAGGATTCGAATCTCCTGCAACTGTA GCATAACAGTTTAAGTCTATAACCTTTTTTTAGTTGTCTATTTTTGTGATTATTGGATCAGTTGTTAATTGAAGTTGGAG TCTCATTTTTCCAATATTAGGGACATTAATTACCTAAGACCTCCTCTAGAATAAGTTATTTTTTTCTTCCCCTAATTAAT TGCATTCTTGTCCTGTTGGTGTAATTTTCGATTCCTTAGTTTTTTAAACCTGATTAAGTCCTTCTACTTTTAAAAGTTAT TGAATTTGGTTGTTGTCTCAATTTTTATATGCATAAGTTCTGCAAAATTCATTTTCATCTCAAATATTTTAGGGCTTTA
CDS sequence (LotjaGi2g1v0002600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTTCGTTTGTGCTTCTATGCATGTCTCTTTCTCCTATTGGGGTTGAGATCAGAACTTGCCAATGCTCAGTTTTT CAGAAAAGTAGGAGACAAGTTCCTTTCTTACTCGAAAATAGTTGTAGATCCATCAGGGCATGGAAACTTCTCTACCATAC AATCTGCCATTGATTCAGTGCCTTCCAACAATAGGTATTGGGTTTCCATCAAGGTGAAGGCAGGTACCTACAGAGAAAAA GTGAATATTCCTTATGATAAGCCTTACATCATATTGAAAGGTGAAGGGAAAAGGAAAACTCTTGTTGAATGGGGCGACCA TAATTCAACCGCACAGAGCCCAACTTTCACAGCCGTGGCAGATAATGTTGTAGTCAAATGCATGAGCTTCAGGAATTCAT ACAATAATCCAATAAACAATAATCCCAAGAGGCCTGCAGTTGCTGCAATGGTGAGCGGAGATAAGTCTTACTTTTTAAGA GTTGGGTTCTTTGGCTTGCAAGACACTTTGTGGGATGATAGTGGAAGACATTACTACAAGCTTTGTACCATTCAAGGTGC TGTTGATTTTATCTTTGGTGCAGGACAGTCTTTGTTTGAGAGGTGCTCCATATCAGTTATTGGTGCAGCCTTAGAACCAG GATTTCCTGGTTATATAACAGCACAAGGGAGAACAGAACCAAACGAGGGAAGTGGGTTTGTTTTCAAAGATTGCCACGTA TTTGGAAATGGGACAACCTACTTGGGTAGGCCATGGAGAGGTTATGCTAGAGTCTTGTTCTACAACACCAACATGTCCAG CATTGTTCAACCTGGTGGCTGGGAGGCTTGGAATTTCGTTGGACATGAGGATGGCATAACATTTGCTGAGCATGGCAATT TCGGGCCGGGTTCTGACACGTCTAAGCGAGTGAGTTGGGCTAAGAAGTTGGATTTGACTACTGTTTATAAGATGGCAAGT TTGAACTTCATTAACAACCAAGAATGGAGTCAGAACCAAATGTTATTATAA
Protein sequence (LotjaGi2g1v0002600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLRLCFYACLFLLLGLRSELANAQFFRKVGDKFLSYSKIVVDPSGHGNFSTIQSAIDSVPSNNRYWVSIKVKAGTYREK VNIPYDKPYIILKGEGKRKTLVEWGDHNSTAQSPTFTAVADNVVVKCMSFRNSYNNPINNNPKRPAVAAMVSGDKSYFLR VGFFGLQDTLWDDSGRHYYKLCTIQGAVDFIFGAGQSLFERCSISVIGAALEPGFPGYITAQGRTEPNEGSGFVFKDCHV FGNGTTYLGRPWRGYARVLFYNTNMSSIVQPGGWEAWNFVGHEDGITFAEHGNFGPGSDTSKRVSWAKKLDLTTVYKMAS LNFINNQEWSQNQMLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 9 | 333 | 325 | 4.6E-147 | – | |
| PANTHER | 9 | 333 | 325 | 4.6E-147 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 336 | 312 | - | – | |
| Gene3D | 37 | 335 | 299 | 1.5E-100 | ||
| SUPERFAMILY | 39 | 331 | 293 | 6.57E-84 | ||
| Pfam | 40 | 324 | 285 | 1.3E-67 | ||
| ProSitePatterns | 184 | 193 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi2g1v0002600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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