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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0004000 |
| Transcript ID | LotjaGi2g1v0004000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G31430.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430; TrEMBL-Plants: tr|K7L2C8|K7L2C8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0004000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:1546425..1552036) extracted from Lotus japonicus Gifu genome v1.2.
AACATGAAAGTGAAACACACAAAAAAAACTCTAGAAACTACCCATAAACCCTTTCCCTGAAGCTGCTTAGCACCACCATG TCAGTTTGAAGAAGTAAAGCTCCCACTCCCTGTAACCTTTGTTTCTTATCAGTTCACCCTCTTCCGCTAACTAACACTGC TGTTGATTCTGGCCCAGCCTGTATAGCCTCAATACCAGTGTAAGTATGCGCCTTCTCATTCCCTCGTTTATGCACACACA AATGACAAAACAATTTCTCTGAAAATATTTCTTCAAGCGTTATAGAATGCTTCTGATTTGCCCTAGGTCACTGTTTTTCT TATTGCTTCTAAAACTGCATTTGTAAATTGAAATTGAGCCTCATTTCAAAATCACACAACTTCACCCCATAATTTCTCTC TCATTTTTAAATATTCTTTTTGCAAGATAATTTCTACTAACTTGATTGTTGCTTGGTTCCTGTATTTCAAAAAAAAATGG TCTAGAATCAACTTCAAAACCCAATTTCGAACTGGTTTAAAGCCAGAATGGATTTTTTCATATTCAAAATCTGTTTTGGT TTAGAACTGGCTTTAAAAAACCATTTATTGAATCAGTTTTTCAATTTTTGATTACTTTTGGTTGGTAGCTGGAGAACGGG ATCACTGGTATACTGAATCGATCAGGATTCTCTGCTGTTAAAATTTTACCTATTAAACCGTTGTGTCTAAATGTGATTCC ATTGAAATTTTCAAATGTTTACAGAATGAAGTGAATATATTCCCATGATATAAACATCAGGATCATCTCATATTCAAGCA AGAAAAACAAACTATAATGAAGGGAACATGTATTTCTCTTCTCAAAAGTTGCAAATCCATGTGCGAGTTGAAGCAAATTC AGGCCCTCATATTCTGTTCAGGCCTGCAACAAGACAGGGACACCCTCAACAAGCTCATGGCCATTTCTACGGACTCCTCC ATTGGAGACTTTCACTATGCACTTAGAATCTTCGACCATATCCAACAGCCATCTTTATTCAACTACAATGTCATGATCAA AGCCTTTGCAAAAAAGGGTAGTTTCAGAAGAGCCATTTCTCTGTTCCAGCAACTGAGGGAAGATGGGGTGTGGCCTGATA ATTACACCTACCCTTATGTCTTGAAGGCCATTGGCTGCCTGGGAGATGTTGGTCAAGGGAGGAAGGTTCATGCTTTTGTG ATCAAGAGTGGCCTTGAGTTTGATGCTTATGTTTGCAACTCGCTGATGGACATGTATGCTGAATTGGGGCGACTTAGTGA CTTCAAAGAGCTGTTTGAGGAAACTCCTGACAGGGATAATGTTTCTTGGAACATCATGATTTCGGGTTGTGTCAGGTGCA AGAGGTTCCAGGAGGCTATTGAATTTTTTCAGCGGATGAGAATGGAAAGCAAGGAGAAGCCCAATGAAGCTACTGTTGTG AGCACCTTAACGGCATGTGCAGCGTTGAGGAATGCGGAGGTTGGCAAGGAAATTCACAGTTACATTGCAGAGGAACTGAA TCTTACAACCATAATGGGGAATGCTTTGTTGGATATGTATTGCAAGTGTGGGTTAGTGAGCATTGCCCGGGAAATTTTTG ATGGGATGATCATGAAGAACGTGAATTGTTGGACTAGTATGGTAACGGGGTATGTGAATTGTGGTCAGTTGGATCTAGCT AGAGATTTGTTTGAGAAGAGTCCAACAAGGGATGTAGTTCTTTGGACAGCTATGATTAATGGGTATGTGCAGTTTAATCG TTTTGATGAGGCAATTGCACTATTTGGCGACATGCAAGTCAGAGGAGTGAAGCCTGATAAGTTCATTGTGGTTGCTCTCC TTACAGGTTGTGCTCAATCAGGAGCTCTGGAGCATGGCAGGTGGATTCATGATTACGTAATTGAAAACAGAATCATGGTG GATACTGTGGTTGGTACTGCCCTTATTGAAATGTATGCTAAAAGTGGATGTGTAGAGAAATCTTTGGAGGTTTTTAATGG ATTAAAAGAAAAGGATACTGCCTCGTGGACCTCGATTATTTGTGGACTCGCCATGAATGGTAAGACAAACAAAGCACTAG AGTTGTTTGAAGCAATGGAAACATTGGGGGCAAAACCTGATGATGTTACCTTCATTACTGTTTTGAGTGCATGTAGTCAT GCAGGTTTAGTAGAAGAAGGCCGCAAGCTATTTCATTCCATGTCAAGTAAATATCATATTAAGCCAAATTTAGAACACTA TGGGTGTTTCATTGACCTTCTTGGTCGAGCTGGACTGTTACATGAGGCAGAGGAGTTGGTAATGAAGTTACCAGATCAAA CTGATGAGATAATAGTTCCACTTTATGGAGCTCTTCTAAGTGCCTGCAGAACTTATGGCAATATTGATATGGGTGAAAGG CTTGCTACAACACTCGCAAAAGTTAAATCTAGTGATTCAAGTGTTCATTCACTTCTTGCTAGTATTTATGCTTCAGCTGA CAGATGGGAAGATGTGAACAAGGTGAGAAGTAAGATGAAAGATTTGGGTATCAAAAAGGTTCCGGGATATAGCTCCATTG ATTTGGAAGGTTATGGTAATAGTGGTGGAGTGGGGGCCTTTTCCCATTCTCTGACCAAGTTTGGTTTGCAACATGGAATG GGGTAATCAGCAATTTATGTGTAATCTTTCAAAATCCTAATCATTGATTTTTGGACTGGTGAACTTTAAGTTCAGTTAAG AAGGTTCGCATTTAATATTTTATTTGGGTCATAAAACTCTACAATTGCTTAAACTTCGCGTGCAATCCCTTAATCACAGG AAGTTGGGTGGATGGAGAACTCAAATAAAGCCTAATGTCCTAACAGGAACTGATATTATTGGTGAAAGTGCCAAATTTGA ACATCGCCTTGTTTTGATTCATATTTCACTCTTCTTTCTGGGACAAACTTTATCTCCAAATGTAAGCTCAAGACTCAGCA AAGTATCCTTGGTGCCTCTTTGGCGATATCACATATGAATTCTGGTGTCTTTCACTCTGATTCGGAATTTCAGACTGTTT CATAAGCGTGTCAGGTATCTCTTCTTCATCTTCTCTTGTAGTCTAACAGGTGTGCACCGACATAGTGAATCTAAATAACA AATAGAGGATTAAAATATTAGTCAAATTTAATTAGTTTCATTCTCGTTTTATGTGTTTATGGTATTTTTAGTAACTGTTA TTGCAACGGATGTGATAAATTATTGACTCATCATGAATAAGTTTGGTTTATAGATATGTGTGTTAGAAAGGTATGTCCTA GCTGAAAGTATAAATTGATAGTTCAGTCTGTTCTCTACTCTCCTAAATACTAATCTTCTTGTTCTCTTAATCAACAAAAA TGTTACTGTGAATGAATACCACCTTAATGCTTATACTGTTCTCGCAGCTTGTGATGAAATATATTCAATCAAATCAAATT ATGACAAATATAACTACATATATGTACACACTCACAAAAAATGAGCTACAACCTTTGCTGTTCCAGTGTTTGGATTTTGG CTAATATAATTTGGCAAGGTCAAGGATTGATTGTGTTCTGTTTGCTTTGGGTATCACTGTTGTTATTGTTTTGGTTGCGG TGTTCTGTTTGCTTTTATTGTGCTGTACTTGTGTTCTTCTGATTGCGGATGTGATAATGAGTGTTTCTAGTTTCTACAGT CCTAGTGTTGGTTTTTGATTGTATGGCGTGCTTGTTTATCCACATAATAAAATAATAATTCTTTAGCATTTGATGGTAGG ATAGAGTTCCTATAAATATTATAAGGTCAAGGTCAGCTTTGGAAGAAGTGAATGCCCAACAAAGGAGGGAAATTTGAGAA ACTTAGAAGCATCTTTACAATGAATAACTCATTGATTGTCTCTAGTCTTAACTTTTTGGTGATCTCAGAGAATGGTATGC TTGTTGCTCTTGACTTGGCTCTCCTTGTTTGCTTTTAAGTAGGCATTTTCGGATTATATAGGCTATATGTTGAACCTTTG ACCGTCTTTATATTTTTACTTGTGATGTGCTGAACCTCTACATTTTTTACTGTTACAGGTTCTGTATCGGGCAGGTCTGC ACATTTGTTCTTGCTAGGCATGCCAACTTTGAATAAACTCCATGTTTAATACTCAAGAGAAGAGGGTGAAAATGACTGAC AATGCAAGATTAGTATCAGAGAGCTCCAGAAAAGTAACATATTGCAGCAGTTTGGTGGCCCCCTTCAACTATTGGATATT GGGTCACTGAGTTAGAATCGTTGCAACAAATGTACAGATGGTGGAGTTGCTGATGAAGCTGGGCTTCATATCATATTAAA TGCATTGCTTATACCTTATATAATTTCATCAGAAGCTCTGAAGGTTATCATTGATTCCCTCTTTAGATGTGCTTAGCTCC CTCTGTGGTGGGTATACACCTAGAATACGCCAACGAATTTGATTCATAGAAGTTGAATTCTTCTATCATACCTTGCAAAT TTTTGTCAGGTTCCTATAGGGCCTTAGATTAACTCAGCGTTAGAGTGATTTTTATAGCAAATCACATTTGAAATTCTTTT AACCAGAGTTAATAGCTAGGCCAACCATTAAATCATTTTCTGCTATTTTCATGGATTAATGCAATCCATTGGAGACTCTT TATGTGTTTCTTTCTGTTGACATAATCAATTTTGCTGCAACTTGGGAGTAAGTTTCCACCTCTGTGAATCTGTTATCTTA ACATTTTGATTGGCTTATAGGGAAAGCAGCAGCTGTGATTTCGTTTACTGATTTTGATAACTATTTGTTGTACTACTAAT TGCTACATCTAATTTTGTCTGTGCTCATAGCTCAATCTTGACCATGGCCTCCTTTAGAATTCTAATGCAAATGGCAGAGC AGTGAATTATGTTACTTCTTTTCATAATACCTATTTTTCAAATTATGTACTTAATTTTTTGTGTTGCTTTTTGTTAGGTT AGATGAAACAACAAGATAATACTCAGAGAAAAGAATGAAACAGACTGCAATTGTATTAACAGAAAAAGGAATTACAGAGA TAACAGAGAATAGAAAAGTGTTGATAATAGCCATTATCAACCCCAAAAGAGCACTACGGCTTCCCTCTCACCAGTGTGAG CCTAATTCTCTCTCTATAACAGAAAATAAAGATCAATGATGATGATTCCTCACTCTTCTCTCTCCCTCTTATATCATAAC TAACTTAATATTCTCTTCCTCAAATATCTGCCAGCTCAGCCTCTTGTAGAACCTTCCCACGCTTCCTCTTGTAAACTCTC CAAACCTTGGGCTTCTTATTGTTCACATCAAGGCCCACATCCTTGCTATCATCAAGGCCCGCTTCATTACTCAGGTTTCT AACACTTTTCTTTTACACGTCATATTTGAGACTTTGAAAAACGTCCTATATAATATAACTTTTTGTTCAGATTTTGTACA TTTGAGAAAACTCGCAGTGCCAAATGAAGTTGAGACAATGCTCCTATGCCTCTTATATTTACTTCTTGTAGTGTAGACGG CTCTGTTCAAACTTTTCTCGAAGGGTTATGATTTATTCACACCTCACTTTCTCTTCTATCTTATTTTCACTTTCTTTCTC TTCATATTTCTC
CDS sequence (LotjaGi2g1v0004000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGAACATGTATTTCTCTTCTCAAAAGTTGCAAATCCATGTGCGAGTTGAAGCAAATTCAGGCCCTCATATTCTG TTCAGGCCTGCAACAAGACAGGGACACCCTCAACAAGCTCATGGCCATTTCTACGGACTCCTCCATTGGAGACTTTCACT ATGCACTTAGAATCTTCGACCATATCCAACAGCCATCTTTATTCAACTACAATGTCATGATCAAAGCCTTTGCAAAAAAG GGTAGTTTCAGAAGAGCCATTTCTCTGTTCCAGCAACTGAGGGAAGATGGGGTGTGGCCTGATAATTACACCTACCCTTA TGTCTTGAAGGCCATTGGCTGCCTGGGAGATGTTGGTCAAGGGAGGAAGGTTCATGCTTTTGTGATCAAGAGTGGCCTTG AGTTTGATGCTTATGTTTGCAACTCGCTGATGGACATGTATGCTGAATTGGGGCGACTTAGTGACTTCAAAGAGCTGTTT GAGGAAACTCCTGACAGGGATAATGTTTCTTGGAACATCATGATTTCGGGTTGTGTCAGGTGCAAGAGGTTCCAGGAGGC TATTGAATTTTTTCAGCGGATGAGAATGGAAAGCAAGGAGAAGCCCAATGAAGCTACTGTTGTGAGCACCTTAACGGCAT GTGCAGCGTTGAGGAATGCGGAGGTTGGCAAGGAAATTCACAGTTACATTGCAGAGGAACTGAATCTTACAACCATAATG GGGAATGCTTTGTTGGATATGTATTGCAAGTGTGGGTTAGTGAGCATTGCCCGGGAAATTTTTGATGGGATGATCATGAA GAACGTGAATTGTTGGACTAGTATGGTAACGGGGTATGTGAATTGTGGTCAGTTGGATCTAGCTAGAGATTTGTTTGAGA AGAGTCCAACAAGGGATGTAGTTCTTTGGACAGCTATGATTAATGGGTATGTGCAGTTTAATCGTTTTGATGAGGCAATT GCACTATTTGGCGACATGCAAGTCAGAGGAGTGAAGCCTGATAAGTTCATTGTGGTTGCTCTCCTTACAGGTTGTGCTCA ATCAGGAGCTCTGGAGCATGGCAGGTGGATTCATGATTACGTAATTGAAAACAGAATCATGGTGGATACTGTGGTTGGTA CTGCCCTTATTGAAATGTATGCTAAAAGTGGATGTGTAGAGAAATCTTTGGAGGTTTTTAATGGATTAAAAGAAAAGGAT ACTGCCTCGTGGACCTCGATTATTTGTGGACTCGCCATGAATGGTAAGACAAACAAAGCACTAGAGTTGTTTGAAGCAAT GGAAACATTGGGGGCAAAACCTGATGATGTTACCTTCATTACTGTTTTGAGTGCATGTAGTCATGCAGGTTTAGTAGAAG AAGGCCGCAAGCTATTTCATTCCATGTCAAGTAAATATCATATTAAGCCAAATTTAGAACACTATGGGTGTTTCATTGAC CTTCTTGGTCGAGCTGGACTGTTACATGAGGCAGAGGAGTTGGTAATGAAGTTACCAGATCAAACTGATGAGATAATAGT TCCACTTTATGGAGCTCTTCTAAGTGCCTGCAGAACTTATGGCAATATTGATATGGGTGAAAGGCTTGCTACAACACTCG CAAAAGTTAAATCTAGTGATTCAAGTGTTCATTCACTTCTTGCTAGTATTTATGCTTCAGCTGACAGATGGGAAGATGTG AACAAGGTGAGAAGTAAGATGAAAGATTTGGGTATCAAAAAGGTTCCGGGATATAGCTCCATTGATTTGGAAGGTTATGG TAATAGTGGTGGAGTGGGGGCCTTTTCCCATTCTCTGACCAAGTTTGGTTTGCAACATGGAATGGGGTAA
Protein sequence (LotjaGi2g1v0004000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGTCISLLKSCKSMCELKQIQALIFCSGLQQDRDTLNKLMAISTDSSIGDFHYALRIFDHIQQPSLFNYNVMIKAFAKK GSFRRAISLFQQLREDGVWPDNYTYPYVLKAIGCLGDVGQGRKVHAFVIKSGLEFDAYVCNSLMDMYAELGRLSDFKELF EETPDRDNVSWNIMISGCVRCKRFQEAIEFFQRMRMESKEKPNEATVVSTLTACAALRNAEVGKEIHSYIAEELNLTTIM GNALLDMYCKCGLVSIAREIFDGMIMKNVNCWTSMVTGYVNCGQLDLARDLFEKSPTRDVVLWTAMINGYVQFNRFDEAI ALFGDMQVRGVKPDKFIVVALLTGCAQSGALEHGRWIHDYVIENRIMVDTVVGTALIEMYAKSGCVEKSLEVFNGLKEKD TASWTSIICGLAMNGKTNKALELFEAMETLGAKPDDVTFITVLSACSHAGLVEEGRKLFHSMSSKYHIKPNLEHYGCFID LLGRAGLLHEAEELVMKLPDQTDEIIVPLYGALLSACRTYGNIDMGERLATTLAKVKSSDSSVHSLLASIYASADRWEDV NKVRSKMKDLGIKKVPGYSSIDLEGYGNSGGVGAFSHSLTKFGLQHGMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 168 | 165 | 8.0E-25 | ||
| PANTHER | 4 | 124 | 121 | 7.4E-119 | – | |
| Pfam | 65 | 111 | 47 | 1.2E-9 | ||
| ProSiteProfiles | 66 | 100 | 35 | 11.674 | ||
| TIGRFAM | 70 | 98 | 29 | 2.7E-6 | ||
| ProSiteProfiles | 101 | 135 | 35 | 6.478 | ||
| PANTHER | 120 | 222 | 103 | 7.4E-119 | – | |
| ProSiteProfiles | 136 | 166 | 31 | 8.298 | ||
| Pfam | 139 | 162 | 24 | 0.16 | ||
| Pfam | 167 | 215 | 49 | 1.6E-8 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.246 | ||
| TIGRFAM | 169 | 204 | 36 | 3.1E-9 | ||
| PANTHER | 221 | 294 | 74 | 7.4E-119 | – | |
| Gene3D | 224 | 351 | 128 | 8.5E-30 | ||
| ProSiteProfiles | 237 | 271 | 35 | 8.539 | ||
| Pfam | 242 | 269 | 28 | 9.0E-4 | ||
| Pfam | 271 | 294 | 24 | 0.0018 | ||
| ProSiteProfiles | 272 | 298 | 27 | 5.415 | ||
| PANTHER | 276 | 360 | 85 | 7.4E-119 | – | |
| Pfam | 299 | 346 | 48 | 6.6E-11 | ||
| ProSiteProfiles | 299 | 333 | 35 | 12.759 | ||
| TIGRFAM | 301 | 334 | 34 | 5.5E-9 | ||
| ProSiteProfiles | 334 | 368 | 35 | 6.489 | ||
| PANTHER | 352 | 576 | 225 | 7.4E-119 | – | |
| Gene3D | 352 | 453 | 102 | 1.9E-21 | ||
| ProSiteProfiles | 369 | 399 | 31 | 7.892 | ||
| Pfam | 399 | 447 | 49 | 2.3E-10 | ||
| ProSiteProfiles | 400 | 434 | 35 | 11.4 | ||
| TIGRFAM | 403 | 435 | 33 | 1.2E-6 | ||
| ProSiteProfiles | 435 | 465 | 31 | 8.912 | ||
| TIGRFAM | 437 | 471 | 35 | 1.6E-5 | ||
| Gene3D | 454 | 589 | 136 | 2.7E-13 | ||
| ProSiteProfiles | 471 | 501 | 31 | 6.928 | ||
| Pfam | 474 | 497 | 24 | 0.31 | ||
| ProSiteProfiles | 540 | 574 | 35 | 8.133 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0004000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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