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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0007200 |
| Transcript ID | LotjaGi2g1v0007200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G13770.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q66GP4|PP379_ARATH Pentatricopeptide repeat-containing protein At5g13770, chloroplastic; TrEMBL-Plants: tr|V7C8F2|V7C8F2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0007200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2636516..2641625) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCAAAATAATCAAATATTAACATTAAAAAGATAATGAAACTGGGGTATATGGCTACAAGAGACTAACGTGGCTTTT CGTGGAAGCAGAGAGAAAATGAGATGTTGTGTGATTCCTCCACGCCACACGTCATTATTTGAGTGGTGGTTAAGATATCT AGAGTTTGGATAGAGCCACACATGACATGTAACCAAAATTGCAATCCACATTGATTCTTCAAACTGTCTTCTCTTCCAAA CCACATTCACCTGTAAATTGTAATGGCCATTTCATGTTCTGCAGACTGGTCTCTAGCTTGCACAAGAACTCACGTGCATT CATTCATCCCCACGTGCCACTTCCCTTCCTCGTACAATGTCTCATCATACTCCTCCTCCAATCCACGGTTCTTCAGTGCA AACTCCTCTGCCTCTCCCACACCCATCTTAGAAGAAGCATCAAATTCCAACACCCCCATGCTAGATGTAGATAATGTTAA CAACATTGCTGGTTCTCATCAGCAATATTCCAACCCAGGAACAGAGAACTTGAATGAGTTTCTATGCGGGTTGTTTCAGG ATCCAAAAACTGAGGAACTTGCATTTGACTACTACCAAAGATTGAAAGACAGGCCAGTGTTTAGACCAGAGAAATCAACT TTGAAGCATGTGATCAGGTATTTGATGAGATTTAAGAAATGGGATTTCATTTTATCAGTTTCTGAAGACTTTAAGATTTA TCATGTGTTGCCGGATGGAGCTACTTGCTCTAAATTGATTGAGTTCTGCATCAGACAAAGAAAGTTCAAGATTGCTGAGA CCCTTCTGAATGCTTTTAAATCTGATAGTGAGGTTGCTGTGTTTGCATTTGGTTCTGCCTTGAGAAATTATAACAAGCTA CATATGTTTAGGAGAACTGTTTTAGTCTTTGAGAAATTGAAATCAAATAGTGTTGTTTTGGATTCAAGAGGCTATTCACA CATTATGGAAGCTTACTCTAAACTTGATGATTGTGAGAGTGTGGTGAAATTGTTTCATGAATTTGAAAGTAGGAATTTGA GAGACTCAAAAAGATACTTAGGTCAGATATATGGGGTTCTGTGTGAGTCATTAGGAAAGTGTGGAAGAGTTTCTGAAGCA CTTGAGTACTTCAGAGAGATGACAAAGAAAGGGATTTTTGAAAGTTCTGTTTACTCTACCTTGATATGCTCTTTTGCAAG TTTGCACAAAGTTGGTGAGGTTGAGGAGCTTCTCAGAGAAGCTAAAAGCAGAACAAAGATAAAGGATCCTGAGGTTTATC TAAAGCTTGTGATCATGTATGTTGAAGAGGATTTATTGGAGAAGACTTTGGAAGTTGTTGAGGCAATGAAGGATGCTGAT GTCAAGGTTTCTGATTGTGTGCTGTGTGCTGTTGTTAATGGCTTCAGCAAAAGAAGAGGGTTTTCAGCTGCAGTTAGAGC CTATGAGAAGCTGATTTCTCAGGGCTATGAGCCAGGACAAGTCACCTATGCTTCGGTTATAAACGCGTATTGCCGGCTCA GTCAATACAACAAAGCAGAGAAGGTGTTTGAAGAAATGGAGCAAAAGGGGTTTGATAAATGTGTTGTGGCTTATTCAAGC ATGATTGTGATGTATGGCAGAAGTGGGAGACTGAGAAATGCAATGAAGTTGGTGGCTAAGATGAAAGAAAGAGGGTGTAA ACCAAATGTGTGGGTCTACAATTCCTTGATAGACATGCATGGAAGGGAGAAGAATTTGAGGCAGCTTGAGAAGCTGTGGA ATGAAATGAAGAGAAGAAAGGTAGCACCTGATAAGGTGAGTTACACTAGCATGATTGGAGCTTATAGTAAGGCAGGTGAA TTTGAAACATGTACAGAACTTTTTAATGAGTATAGGATCAATGGGGGAGTGATTGATAGAGCCATGGCAGGTATAATGGT TGGCGTGTTCTCGAAGGTTGGTCAGATTGATCAACTGGTGAAGCTCTTACAAGACATGAAAATGGAAGGAACAAGGTTGG ATCAGAGGCTGTATCAGTCTGCTTGGAATGCCTTTATAGAAGCTGGTTTGCAACTTCAAGCAAAATGGTTGCAAGAGAGT TTCCATGTAAGTTAATTTTCTAAAGCTGAAATATTTCAATCCTGTGGGCAATTTGATACTTGTTTCTGCTAGCACTTGGA AAAAGTAGATATCTATCAGCTATACATGTTGTATAGGTTTTGGGGCTGAAAAGCTCTTCCATTATGATCCAGTGCTTCCA AATTGTAAACAACTTTTTGTAGTGACTTCCGTAAGAGGATTGAAATCACATGTCCTCTTGTACGTTCCTTCAATGAAAAT ATTGTTAGAATTTTTTATTCTAATTTGGACTTATATTGATTGACGAGGATTGAAATCACATGTCCTCTTGTACGTTCCTT CTAAAATAAGTTGAATGTTATCTGATATGTTTTTCCTAGTGAGCGCAGGTGTTAATGTGATCCTTATGAAATATTTTGGG AATAACGATGTGGATATAAGTTTATTGGGTTGAGCCCAATAGGCAAGTGTGTAAACTTCTGTGTAGGGCCTAATGGACCT AATATTCATGATGGATGGAAATTAGATTTCCCATGTTTTATTAATAAAGGGCAGATCCCCACTTGACTCTGACGTTCTTT AACGACTCGTGCTCCATCGAAGAGTTTTTTGCAAGAGACGAGAGATCAAGTGGTAGGTCCTATTCTATCGCACACAGCTG TGTGTGTGTGCTTCCGCAAATCAAAGGGACTAATAAGGATGTCTTAAAAGGTACGCAAAATTTATCATAATTTTGTAGTG TTCAAATATCTAATATAAATCGAGTTAATATGCAATTCCTACAAATAGAACATTTCAGACAGCAAAAAAAAACTCTCATT AAAACTAACATTCATATCTTAGGTGTTAATTTATTTTGGCTTAATCGTACTTTTGGTCCCCCACGAATGCTATATGTGCC ATCAAGGTCCCTAAAGTTCAAAAATCTCATTAGGCATCCCCAATGTTAACCTATGTTAACAACTTTGGTCCCTCCTCTTT TGCATTAAAAAACTAACGGTTTTGGGGACCAAAAGTGCAAATGAACCAAAAAACAAATAAAAAATTAAAAAATTAAAATC CAGAAAACACTTATAATCTTCCTCTTCTTCCTTTATCATCTTCATCATCTTCAAACCCAGATGTGAGATTGAAACAACAT ATTCTCTCATAGTCATACCTCCCCTCACCCACCACTCATCCATTTCCTTCCTCACCCACCATCACATAAAACCCACATAA TGAAGAACAAACCCAAGAAACACACATGGAAGAAGAAATTGGAAAACATCGGTATTGATTGAAAAGTTTTGATTTTTCTT CCAGCAGAGGCATAAAGCCAAAGATGCAGAACAAAGAAATTGGAAAAGAATGAGTATTGATTAATTGGATCGTTTCCTAT ACCACAACCAAAGATGCAGACCAAAGAAAATTGGAAAAAAAAGGGTATCAGTTCATCTAATGGGTATTGATTTTTCTTCC TATGATTGGACCGATCTGTTACATTTCGTGTTATGAATTACAAGTTGCATAATTCAATTTGCTTTTAGTTGTGAATTATG ATTTCAATTTTGTGATCTGAAGTTCAGTTTTCTCTACTCTCAACACTCAAATATGGAATTTTTTAAAAATTTGTTGGGTT TTTAATGTTGAAGATGTTGAAATTGAAGAGGAAGAAAATGAAGATGAAGAACAACATTCATGTTTTCTCAGTTTTTAATT TTAATTCCAATTTTTTAATTATTTTTCTGGTTTAATTACATTTTTTACCTTAGAACCGTTAGTTTTTGGATGGAAAAGAG ATGAGGGACCAAAATTGTTAACGGAGGTTAACGTTGGGGATGCATAATGAGATTTTTGAAGTTTAGGGACCTCGATGACA TATATATCATTCGCGGGGGACCAAAAGTGCGACTAAGCCTATTTATTTTTGTGTAGAAGTGTTATCTTTGTTATTAAAGG GACCGAAACGAGCCAGAAATAAGGAACATGTGATCTCAATACATTATTAGGTCACTAGTGGCACATAATTGGAATTGTGG TCGCGGTTATGTCGCGAAATTGCAGATAAATGTAGGTTGAAGTGGCAACAATTGCGGTTGTAATGTTGTTGTCAGACTAA AAAACCCTTTTACATTGATGCCGCAATTGTGGTTTCTGACCTCAATTTCAAACCTTAATTTAATTTCATGGGGTTTAACT CCATCTGAATAAACTTCAATAAAAAAAACTTTTGTCTAGTATTGTTAGGGTTGATTCTAATGGTGGATCAAATCTGTTGT TCTGGTTGGCTTCTCAACCATGTGGCCTGAGGACAACTGAGCCGACCGAAAGGTATGCACCTGATTATCCGCCACATGGC CGGGCCGAATGGCTTGTGAGGAAACATCCCCACGATAGTGTCCGCTTGGCCACTAGAGGATAAAGATCAACAAGTCAAGG CTACGTGACTCATGACCACTTGTCTGATCGGACACCCTGTTTAAGGGGCTTCCCTCACTTGCTGAGACAACCGTTAAGGA CTCCGACTTTATAATTACAGGTTCTACCATTCATACATAACATGATATTCATTCTAAGCATTTTACTTAGAGTTTTATCT GAGTTTTTTAGAGTCTCTCTCATCCAAACACTGACTTGAGTGTCGAAGTGTCTTATGTAGGTTACCTCTCCATGCCATTG AACTTGAAGCTCCGTTGTGACTTACGGGACCACCACCGCGCAATTGTGGTGTGATCCATTACCTCAACAGAGAGAGACTC ACACTAGATTCTTAGGTTCGAACAATTTGCATTGTAGGTGAGGAGACACAAAAAACAAATTGAAGAAGGAAGACCGCAAA CAAAGAGATTCCATTCAACATGAGTTCATACTCCAGCGTGCAAAGAAATTCACACTTCACTCGTGGAGGGATTTCAAGTC TAACGCTCTCCTTGAGCATCAGGGAAGACGAATACGATCAACGTAAGACCCGATTATATTATAAATATTTGGGTTAAATA TGTTTTTTGTACCTGACTTATACACCATAATCTAAACCCTATAAAATTTTATTCATGGTATTTAGTCCCT
CDS sequence (LotjaGi2g1v0007200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATTTCATGTTCTGCAGACTGGTCTCTAGCTTGCACAAGAACTCACGTGCATTCATTCATCCCCACGTGCCACTT CCCTTCCTCGTACAATGTCTCATCATACTCCTCCTCCAATCCACGGTTCTTCAGTGCAAACTCCTCTGCCTCTCCCACAC CCATCTTAGAAGAAGCATCAAATTCCAACACCCCCATGCTAGATGTAGATAATGTTAACAACATTGCTGGTTCTCATCAG CAATATTCCAACCCAGGAACAGAGAACTTGAATGAGTTTCTATGCGGGTTGTTTCAGGATCCAAAAACTGAGGAACTTGC ATTTGACTACTACCAAAGATTGAAAGACAGGCCAGTGTTTAGACCAGAGAAATCAACTTTGAAGCATGTGATCAGGTATT TGATGAGATTTAAGAAATGGGATTTCATTTTATCAGTTTCTGAAGACTTTAAGATTTATCATGTGTTGCCGGATGGAGCT ACTTGCTCTAAATTGATTGAGTTCTGCATCAGACAAAGAAAGTTCAAGATTGCTGAGACCCTTCTGAATGCTTTTAAATC TGATAGTGAGGTTGCTGTGTTTGCATTTGGTTCTGCCTTGAGAAATTATAACAAGCTACATATGTTTAGGAGAACTGTTT TAGTCTTTGAGAAATTGAAATCAAATAGTGTTGTTTTGGATTCAAGAGGCTATTCACACATTATGGAAGCTTACTCTAAA CTTGATGATTGTGAGAGTGTGGTGAAATTGTTTCATGAATTTGAAAGTAGGAATTTGAGAGACTCAAAAAGATACTTAGG TCAGATATATGGGGTTCTGTGTGAGTCATTAGGAAAGTGTGGAAGAGTTTCTGAAGCACTTGAGTACTTCAGAGAGATGA CAAAGAAAGGGATTTTTGAAAGTTCTGTTTACTCTACCTTGATATGCTCTTTTGCAAGTTTGCACAAAGTTGGTGAGGTT GAGGAGCTTCTCAGAGAAGCTAAAAGCAGAACAAAGATAAAGGATCCTGAGGTTTATCTAAAGCTTGTGATCATGTATGT TGAAGAGGATTTATTGGAGAAGACTTTGGAAGTTGTTGAGGCAATGAAGGATGCTGATGTCAAGGTTTCTGATTGTGTGC TGTGTGCTGTTGTTAATGGCTTCAGCAAAAGAAGAGGGTTTTCAGCTGCAGTTAGAGCCTATGAGAAGCTGATTTCTCAG GGCTATGAGCCAGGACAAGTCACCTATGCTTCGGTTATAAACGCGTATTGCCGGCTCAGTCAATACAACAAAGCAGAGAA GGTGTTTGAAGAAATGGAGCAAAAGGGGTTTGATAAATGTGTTGTGGCTTATTCAAGCATGATTGTGATGTATGGCAGAA GTGGGAGACTGAGAAATGCAATGAAGTTGGTGGCTAAGATGAAAGAAAGAGGGTGTAAACCAAATGTGTGGGTCTACAAT TCCTTGATAGACATGCATGGAAGGGAGAAGAATTTGAGGCAGCTTGAGAAGCTGTGGAATGAAATGAAGAGAAGAAAGGT AGCACCTGATAAGGTGAGTTACACTAGCATGATTGGAGCTTATAGTAAGGCAGGTGAATTTGAAACATGTACAGAACTTT TTAATGAGTATAGGATCAATGGGGGAGTGATTGATAGAGCCATGGCAGGTATAATGGTTGGCGTGTTCTCGAAGGTTGGT CAGATTGATCAACTGGTGAAGCTCTTACAAGACATGAAAATGGAAGGAACAAGGTTGGATCAGAGGCTGTATCAGTCTGC TTGGAATGCCTTTATAGAAGCTGGTTTGCAACTTCAAGCAAAATGGTTGCAAGAGAGTTTCCATGTAAGTTAA
Protein sequence (LotjaGi2g1v0007200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISCSADWSLACTRTHVHSFIPTCHFPSSYNVSSYSSSNPRFFSANSSASPTPILEEASNSNTPMLDVDNVNNIAGSHQ QYSNPGTENLNEFLCGLFQDPKTEELAFDYYQRLKDRPVFRPEKSTLKHVIRYLMRFKKWDFILSVSEDFKIYHVLPDGA TCSKLIEFCIRQRKFKIAETLLNAFKSDSEVAVFAFGSALRNYNKLHMFRRTVLVFEKLKSNSVVLDSRGYSHIMEAYSK LDDCESVVKLFHEFESRNLRDSKRYLGQIYGVLCESLGKCGRVSEALEYFREMTKKGIFESSVYSTLICSFASLHKVGEV EELLREAKSRTKIKDPEVYLKLVIMYVEEDLLEKTLEVVEAMKDADVKVSDCVLCAVVNGFSKRRGFSAAVRAYEKLISQ GYEPGQVTYASVINAYCRLSQYNKAEKVFEEMEQKGFDKCVVAYSSMIVMYGRSGRLRNAMKLVAKMKERGCKPNVWVYN SLIDMHGREKNLRQLEKLWNEMKRRKVAPDKVSYTSMIGAYSKAGEFETCTELFNEYRINGGVIDRAMAGIMVGVFSKVG QIDQLVKLLQDMKMEGTRLDQRLYQSAWNAFIEAGLQLQAKWLQESFHVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 89 | 330 | 242 | 1.7E-86 | – | |
| Gene3D | 102 | 268 | 167 | 1.4E-14 | ||
| ProSiteProfiles | 158 | 192 | 35 | 5.963 | ||
| ProSiteProfiles | 227 | 261 | 35 | 7.87 | ||
| Pfam | 231 | 258 | 28 | 0.11 | ||
| SUPERFAMILY | 237 | 479 | 243 | 6.54E-10 | – | |
| ProSiteProfiles | 266 | 300 | 35 | 8.988 | ||
| Gene3D | 269 | 335 | 67 | 1.1E-8 | ||
| PANTHER | 270 | 409 | 140 | 1.7E-86 | – | |
| TIGRFAM | 275 | 298 | 24 | 4.0E-4 | ||
| Pfam | 275 | 298 | 24 | 3.0E-4 | ||
| PANTHER | 303 | 603 | 301 | 1.7E-86 | – | |
| Pfam | 303 | 329 | 27 | 0.28 | ||
| ProSiteProfiles | 335 | 369 | 35 | 7.443 | ||
| Gene3D | 340 | 504 | 165 | 4.5E-39 | ||
| ProSiteProfiles | 370 | 404 | 35 | 7.717 | ||
| ProSiteProfiles | 405 | 439 | 35 | 11.959 | ||
| TIGRFAM | 407 | 437 | 31 | 1.2E-8 | ||
| Pfam | 407 | 437 | 31 | 3.4E-8 | ||
| ProSiteProfiles | 440 | 474 | 35 | 12.09 | ||
| Pfam | 442 | 472 | 31 | 2.1E-6 | ||
| TIGRFAM | 442 | 476 | 35 | 8.5E-8 | ||
| Pfam | 474 | 523 | 50 | 3.8E-13 | ||
| ProSiteProfiles | 475 | 509 | 35 | 10.874 | ||
| TIGRFAM | 478 | 510 | 33 | 5.6E-7 | ||
| Gene3D | 505 | 607 | 103 | 1.7E-14 | ||
| ProSiteProfiles | 510 | 544 | 35 | 9.416 | ||
| TIGRFAM | 512 | 544 | 33 | 2.6E-5 | ||
| ProSiteProfiles | 545 | 579 | 35 | 7.662 | ||
| Pfam | 551 | 576 | 26 | 1.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0007200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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