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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0018400 |
| Transcript ID | LotjaGi2g1v0018400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ammonium transporter; TAIR: AT2G38290.1 ammonium transporter 2; Swiss-Prot: sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1; TrEMBL-Plants: tr|C4NY35|C4NY35_LOTJA Ammonium transporter; Found in the gene: LotjaGi2g1v0018400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:6616142..6618869) extracted from Lotus japonicus Gifu genome v1.2.
TCTACTGTTGTTCCACTTCCCTCAAACCTTGCATTCTCTGATGCAAGCCCTGAATGGATGAACAAAGCAGACAATGCATG GCAGCTCACAGCTGCAACACTGGTGGGCCTGATGAGTATTCCGGGGCTCATGATCATGTACGGCGGAGCAGTGAAGAAGA AATGGGCAGTGAACTCAGCATTCATGGCGCTCTACGCTTTCGCCTGCGTGATTTTCTGCTGGGTTTTCTGGGGTTACAGA ATGTCTTTTGGTGACAAACTTTTCCCTTTCTTGGGAAAACCTGCAGTTGCACTTGATGAGAAGTATCTTTTCAAGCCAGC TTTTTTTGGGATGTTTCCAAATGTAACAATGGTGTACTTTCAGGGTGTGTTTGCTGCAATCACTGAGATTTTGCTAGCAG GGGCTGTGTTGGGGCGCATGAACTTTTATGCTTGGATGCTGTTTGTGCCTTTGTGGCTCACTTTCTCATACACCTTCGTA GCATTCAGCATTTGGTGTCCTGCTGGCTTTTTATCTAAAATGGGGTTGATAGATTACTCAGGTGGATATGTCATCCATTT GTCTTCAGGGGTTGCTGGATTCACAGCTGCATATTGGGTAAGTAATTCAGAAGATTTTATTTTATATGCTTCTTCAATAT ATTTAGTTATATTATTTACTTGTATAACACATTTTTGGACACAAAAGCACCTACAACTGAGCTAAAGAACTCAACCCAAC TTCGAACAATATTCTGGACCCTCTCTACCGAATCCAACAACATTTGGAGCCATATGAATTTTAATTCATGAGCATGTGAA CAATCTCTCTCAATAGATATTCATGCCACACATAAACTAGACAAATTCATTATTTGATACATGAGCATGTGAAATTTAAT AATTAATTTTTCTTTCTAATCAAGAGTTTTGATGTCTTATATTTTTTCTCTAAATTAAAGTGCGAGCTCACACACACTAA TTTGCCAGGTTGGGCCACGCCTGAACAAGGACAGGGAAAGGTTCCCACCAAACAACATCCTTCTTATGCTAGCAGGAGCA GGGTTGCTTTGGATGGGATGGACAGGGTTCAATGGAGGAGACCCTTACACAGTGAGCATGGATGCTTCATTGGCTGTCTT AAACACACATGCTTGCACTGCTACCAGCTTGCTTACTTGGGTCATCCTTGATGTCATCTTTTTCAGAAAGCCTTCTGTAA TTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTTTGCATCACCCCTGCTGCAGGTTTGTAAAATTTGATTACTCACATT TCGAGAACATCTAGCTAAAGTTCAAAAAGTGTAGTATATTTTTTTTTAAAGTCCAATGAAGTTGCTCTCCTAAATTTAGA GAGAGAAAAAAACTTAATTTCACTTTTAGTCCCGATTGTTTTGAATATGTGCAAATTGTAGCTCTCTAGCATTTTCAAGT AAATTAAGTACTTTATTTTTAAAATTAAGTAAATTTGATCACTCTACCAAATTTTTTATGGTACATCAAAAAGATAAATT ACACTATTTAAGGATTGATCCCTAGACCTTCTCCTCCCCAACTCATATATATGTGTGAGAGAGAGAGTGTATCACTCAAC CAATTTGAATATACATAGACTCCATAAATATTTATTTTGTATACATCACCATGAATTGGAGATATAAAATGATTTTAAAA TTTTAAAAAGTGTGAGATTTAGTCGAATTTTGTAGGATGAGGTTTGGGTTTAACGATATAGAATTTGGAATTATTTTTTA TTTTGGTTAGTGAGGGTTGAGGGAGAAAAACTATATAATGATTAGCGTCATTTGATTTGTAAAGATTAAACAAAAAAAAT GAGATTTTGAGAGTTTTAAGTTAAATATATGAAAGAGAGACTTATGGGACTTTATAAGTGAAAGAGGGACTTGATTAGCA CCATTCCTTTTACTGTAATCAACTTAATAATTAAGGAGCTAAACCTGCTCAAAAAACTATTGGGAGATTAAAATCATACA TCAATCATATTAAGAGGACCAAATGTGCAATCAAGGGACAATTCTAAAAGCAAAGTGCTGTTTTTTTGTGCATACTCAAT TGCCTGATCACCGAGCAGAAATTGATAATTAGTGTGTCTTATGTTATGATTAATTGTTGTTTCCTATCATGTTCAGGGGT TGTTCAAGGATGGGCAGCACTTATAATGGGGGTTTTCTCTGGTTCAATTCCATGGTTTACCATGATGGTAATCCACAAGA GATCAAAGCTTCTACAGAAGGTGGATGATACAATGGCAGTGTTGCACACTCATGCCATTGCAGGAAGTCTTGGAGGAATC CTCACTGGACTCTTTGCGGAGCCAAGACTTAACTACTTGTTCTTTGGTACTTATAATAAATACGTTGGTCTATTATATGG CATCCAAATGAACATGTTTGGTACAGGGTTAAGGCAATTAGGAGTCCAACTCTTTGGTATCTTGTTTGTTGTGGTTGTCA ATGTTATAAGCACGAGTTTGATATGTCTCTTGGTTCAACTTTTCGTTCCATTAAGAATGTCTGAAGAGGATATGGAGATT GGTGATGAGGCTGCTCATGGGGAAGAAGCTTATGCAATCTGGGGTCAGGGTGATAAGCTTGAAAATTCAAGTTCAAAGTA TGGAAGTTCATTGTATGAAGATCTTGAAGCTCCTGGGGCCACCAAGAACAAGCGTGGTGGTGGCCAGCTCGAGATGACCT CAAACTAA
CDS sequence (LotjaGi2g1v0018400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAGCAGACAATGCATGGCAGCTCACAGCTGCAACACTGGTGGGCCTGATGAGTATTCCGGGGCTCATGATCAT GTACGGCGGAGCAGTGAAGAAGAAATGGGCAGTGAACTCAGCATTCATGGCGCTCTACGCTTTCGCCTGCGTGATTTTCT GCTGGGTTTTCTGGGGTTACAGAATGTCTTTTGGTGACAAACTTTTCCCTTTCTTGGGAAAACCTGCAGTTGCACTTGAT GAGAAGTATCTTTTCAAGCCAGCTTTTTTTGGGATGTTTCCAAATGTAACAATGGTGTACTTTCAGGGTGTGTTTGCTGC AATCACTGAGATTTTGCTAGCAGGGGCTGTGTTGGGGCGCATGAACTTTTATGCTTGGATGCTGTTTGTGCCTTTGTGGC TCACTTTCTCATACACCTTCGTAGCATTCAGCATTTGGTGTCCTGCTGGCTTTTTATCTAAAATGGGGTTGATAGATTAC TCAGGTGGATATGTCATCCATTTGTCTTCAGGGGTTGCTGGATTCACAGCTGCATATTGGGTTGGGCCACGCCTGAACAA GGACAGGGAAAGGTTCCCACCAAACAACATCCTTCTTATGCTAGCAGGAGCAGGGTTGCTTTGGATGGGATGGACAGGGT TCAATGGAGGAGACCCTTACACAGTGAGCATGGATGCTTCATTGGCTGTCTTAAACACACATGCTTGCACTGCTACCAGC TTGCTTACTTGGGTCATCCTTGATGTCATCTTTTTCAGAAAGCCTTCTGTAATTGGAGCTGTTCAAGGCATGATCACTGG TTTGGTTTGCATCACCCCTGCTGCAGGGGTTGTTCAAGGATGGGCAGCACTTATAATGGGGGTTTTCTCTGGTTCAATTC CATGGTTTACCATGATGGTAATCCACAAGAGATCAAAGCTTCTACAGAAGGTGGATGATACAATGGCAGTGTTGCACACT CATGCCATTGCAGGAAGTCTTGGAGGAATCCTCACTGGACTCTTTGCGGAGCCAAGACTTAACTACTTGTTCTTTGGTAC TTATAATAAATACGTTGGTCTATTATATGGCATCCAAATGAACATGTTTGGTACAGGGTTAAGGCAATTAGGAGTCCAAC TCTTTGGTATCTTGTTTGTTGTGGTTGTCAATGTTATAAGCACGAGTTTGATATGTCTCTTGGTTCAACTTTTCGTTCCA TTAAGAATGTCTGAAGAGGATATGGAGATTGGTGATGAGGCTGCTCATGGGGAAGAAGCTTATGCAATCTGGGGTCAGGG TGATAAGCTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTGTATGAAGATCTTGAAGCTCCTGGGGCCACCAAGAACA AGCGTGGTGGTGGCCAGCTCGAGATGACCTCAAACTAA
Protein sequence (LotjaGi2g1v0018400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKADNAWQLTAATLVGLMSIPGLMIMYGGAVKKKWAVNSAFMALYAFACVIFCWVFWGYRMSFGDKLFPFLGKPAVALD EKYLFKPAFFGMFPNVTMVYFQGVFAAITEILLAGAVLGRMNFYAWMLFVPLWLTFSYTFVAFSIWCPAGFLSKMGLIDY SGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSMDASLAVLNTHACTATS LLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHT HAIAGSLGGILTGLFAEPRLNYLFFGTYNKYVGLLYGIQMNMFGTGLRQLGVQLFGILFVVVVNVISTSLICLLVQLFVP LRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYEDLEAPGATKNKRGGGQLEMTSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 455 | 455 | 8.6E-275 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 455 | 455 | 8.6E-275 | – | |
| Gene3D | 1 | 439 | 439 | 1.5E-126 | ||
| SUPERFAMILY | 2 | 403 | 402 | 4.05E-98 | – | |
| TIGRFAM | 5 | 421 | 417 | 6.4E-112 | ||
| Phobius | 6 | 28 | 23 | - | – | |
| Pfam | 7 | 421 | 415 | 1.4E-81 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| Phobius | 61 | 98 | 38 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 99 | 119 | 21 | - | – | |
| PRINTS | 102 | 118 | 17 | 5.9E-6 | ||
| Phobius | 120 | 125 | 6 | - | – | |
| TMHMM | 123 | 145 | 23 | - | – | |
| Phobius | 126 | 152 | 27 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| ProSitePatterns | 159 | 184 | 26 | - | ||
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| Phobius | 183 | 193 | 11 | - | – | |
| Phobius | 194 | 214 | 21 | - | – | |
| TMHMM | 195 | 214 | 20 | - | – | |
| PRINTS | 198 | 216 | 19 | 5.9E-6 | ||
| Phobius | 215 | 225 | 11 | - | – | |
| Phobius | 226 | 250 | 25 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| PRINTS | 229 | 251 | 23 | 5.9E-6 | ||
| Phobius | 251 | 256 | 6 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 257 | 275 | 19 | - | – | |
| Phobius | 276 | 280 | 5 | - | – | |
| Phobius | 281 | 302 | 22 | - | – | |
| TMHMM | 282 | 301 | 20 | - | – | |
| Phobius | 303 | 313 | 11 | - | – | |
| TMHMM | 314 | 336 | 23 | - | – | |
| Phobius | 314 | 336 | 23 | - | – | |
| Phobius | 337 | 369 | 33 | - | – | |
| Phobius | 370 | 399 | 30 | - | – | |
| TMHMM | 372 | 394 | 23 | - | – | |
| Phobius | 400 | 465 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ammonium transmembrane transporter activity | Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. | ||
| Biological process | Ammonium transport | The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Ammonium transmembrane transport | The process in which ammonium is transported across a membrane. Ammonium is the cation NH4+. |
Expression pattern of LotjaGi2g1v0018400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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