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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0023100 |
| Transcript ID | LotjaGi2g1v0023100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT3G19940.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LT15|STP10_ARATH Sugar transport protein 10; TrEMBL-Plants: tr|A0A0R0EAF3|A0A0R0EAF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0023100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8103012..8105864) extracted from Lotus japonicus Gifu genome v1.2.
TTCCAACATTGATCATGATCTTATAAATTCAAACAAATAAGATAAGAAGCAGAAAGTTCAATACATCTAATCAAGATGGC AGGAGGGGCTTTTGTACCAACTGGAGGAGGAGGGGGAAGACAGTATGAAGGGAAGGTTACAGCTTTCGTGTTGGTCACAT GTTTCGTGGCGGCCATGGGAGGTCTTCTCTTTGGTTATGATCTCGGTATCACCGGGGGCGTGACTTCCATGGAACCATTT TTGATCAAGTTCTTCTCAAGTGTGCATAGACAAATGAAAGATGGATCACACCATGAGAACCAATATTGCAAATTTGACAA TGAGCTACTCACGTTGTTCACCTCTTCCTTGTACCTTGCTGCATTGGTTGCCTCTTTCTTTGCTTCCACCACCACCAGAA TGCTTGGACGCAAACCCTCGATGTTTCTAGGGGGTTTGTTTTTCCTTGTTGGTGCCTTGCTCAATGGTTTTGCTCAAAAT ATTAAAATGCTTATCGCTGGACGTTTATTGCTTGGTTTTGGTGTGGGCTATTCCAATCAGGTAAATAATTTAAACGTACA CACCCAAATTTTCTCTACATTTTATATTTCTCACCATATCTGAACTGAACAATTTAGATCAGACAACTCATGTTTCATTA AGATTGGTGAACAAGCTTGTCTTAAAACTTAAGTCGTCTCATCAAATTCTCAGGTCAGATTCAGTGACTGCATGAATGGA TTTTTAGTAAAATGTTACAACTTGATTAGTGAAACATGAAATGGAATGAGACACGAAATGAGGGTACAGGATTTTAATCC CCTGTATGATGTCTCCTTCGCTATACCACCAATCAAATTGGGCAATATAGATATGAGTATGACAATTATAAATTTACATG AGTGATTTTTAAATGAGATGGTACAATTTGTTTGGTGCCACAAGAAAGAGTATTTCAAATGGGAATAGAGGCTTTCAAAT TTTTTTCTCTCTTTTCTTCTCCTCTTTTCACACTGAGAGTGTCTCTGATGAGGTGAGGTTTTTGCATTCTGCGGATATCT ATAGCATATACCATTTCTAAAGTTTAAATTTTTAAACTAGAAAACAATGTCTTCAGACTAATTAATTTTGTTTTAATTGT TGTGCAACAGTCTGTTCCTGTGTACTTGTCTGAAATGGCTCCAGCACAGATCAGAGGAGCACTCAACATGGGGTTCCAAA TGATGATCACAATTGGTATCCTAATTGCAAACCTTATCAACTATAAAACTTCAAAGCTTGAACATGGATGGAGAATTTCT CTAGGGGTTGGAGCTGTGCCTGCAATTTTGTTGTGTTTGGGATCTCTTTTCTTGGGTGACACGCCTAACTCCTTGATTGA AAGAGGGCAGCATGAGAATGCCAAGAAAATGTTGCAAAAGATCCGTGGCACCGTGAATGTTGATGAGGAGTACCAAGATC TTGTTGATGCCAGTGAAGAAGCTAAGAAGGTGGAGCACCCATGGCGAAACATCATGCAGCCAAAATACAGACCACAACTC ACTTTTTGCAGTTTCATTCCATTCTTCCAACAACTCACAGGCATCAATGTCATCATGTTCTATGCACCTGTCCTCTTCAA GACTTTGGGCTTTGGCAGTGACGCTTCCCTCATGTCTGCAGTTATCACCGGAGGTGTCAATGTAGTTGCCACATTAGTTT CCATCTTCACTGTTGACAAGTTTGGAAGAAGGATCTTGTTCCTTGAAGGTGGTGCCCAAATGCTTGTTTGCCAGGTGAAA ACACAATTCAATTTTTGAAATGACCAGTTACATATATCATTTTAACATGAAATCTCAGTGTCTAATTCTAAGTTCCACTA ATAAATTTTACATGCCAATTAAAAATTACAAAGTTTGCAACTATTTAATTGAGGTGACAAACTTCTATTAGTCAGACAGG AAATTGGACACTTATTGAGTGCAGGAGATCTTGACCCTGAGCCTGAATCAATAGGACTGAAATCATCTGTCCTCATTTGT TATCTCATTTCATGTCCTAGTCCTACCAATTAAATTATGTCATGTGACACACAATCCAGCCAATTGCTTTTTGTAAATTT TCATAACTTCACTGATACAATTTCACACTAAATAGGGACAGAAGACTAATAAATATATTTTTTCCCTTATTGTTTTGTGA GCATGACTGGTATAAATGTTGAAACTTGAAACTATTACTTGTAGATTGCTGTGGGAGCAATGATTGCTGCAAAGATTGGA CTAAGTGGTGATGGCTCATTCACCAAAGGAGAAGCCAACTTCGTCTTGTTTTTGATATGTGCATATGTTGCTGCATTTGC TTGGTCCTGGGGCCCATTAGGATGGTTGGTGCCTACTGAAATATGCTCTCTTGAAGCTAGATCTGCAGGGCAAGCTATCA ATGTTGCCGTGAACATGTTGTTTACATTTGCAATTGCTCAAGTTTTTCTCTCCATGCTTTGCCATTTGAAGTTTGGCCTC TTCTTCTTCTTTGGTGGCTTTGTCATTGTCATGACTATCTTTATTGCATTGCTCTTGCCTGAGACCAAGAATGTTCCAAT TGAAGAAATGAACAGAGTGTGGAAGTCACACTGGTTCTGGGGCAAGTTCATTCCTGATGTCTGATGCGGCTGTCATTGGT GGATATGAACTCAAGACTTGTCCTTGAAGTTGACAAATATTATGTACTTTGCAAATTATCCAACGAGGAACAAATGAATC CAAGTTTAAGCATTTTATATACCATTTTACAAATGCGCATACACGCTATTATTGTACTAAAAAGAATATAAAAGTTGAAT GAGTGAGTTATTTATTTTTCACCCAGACCGAGTATACTGGTTTTGTTTATTAT
CDS sequence (LotjaGi2g1v0023100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGAGGGGCTTTTGTACCAACTGGAGGAGGAGGGGGAAGACAGTATGAAGGGAAGGTTACAGCTTTCGTGTTGGT CACATGTTTCGTGGCGGCCATGGGAGGTCTTCTCTTTGGTTATGATCTCGGTATCACCGGGGGCGTGACTTCCATGGAAC CATTTTTGATCAAGTTCTTCTCAAGTGTGCATAGACAAATGAAAGATGGATCACACCATGAGAACCAATATTGCAAATTT GACAATGAGCTACTCACGTTGTTCACCTCTTCCTTGTACCTTGCTGCATTGGTTGCCTCTTTCTTTGCTTCCACCACCAC CAGAATGCTTGGACGCAAACCCTCGATGTTTCTAGGGGGTTTGTTTTTCCTTGTTGGTGCCTTGCTCAATGGTTTTGCTC AAAATATTAAAATGCTTATCGCTGGACGTTTATTGCTTGGTTTTGGTGTGGGCTATTCCAATCAGTCTGTTCCTGTGTAC TTGTCTGAAATGGCTCCAGCACAGATCAGAGGAGCACTCAACATGGGGTTCCAAATGATGATCACAATTGGTATCCTAAT TGCAAACCTTATCAACTATAAAACTTCAAAGCTTGAACATGGATGGAGAATTTCTCTAGGGGTTGGAGCTGTGCCTGCAA TTTTGTTGTGTTTGGGATCTCTTTTCTTGGGTGACACGCCTAACTCCTTGATTGAAAGAGGGCAGCATGAGAATGCCAAG AAAATGTTGCAAAAGATCCGTGGCACCGTGAATGTTGATGAGGAGTACCAAGATCTTGTTGATGCCAGTGAAGAAGCTAA GAAGGTGGAGCACCCATGGCGAAACATCATGCAGCCAAAATACAGACCACAACTCACTTTTTGCAGTTTCATTCCATTCT TCCAACAACTCACAGGCATCAATGTCATCATGTTCTATGCACCTGTCCTCTTCAAGACTTTGGGCTTTGGCAGTGACGCT TCCCTCATGTCTGCAGTTATCACCGGAGGTGTCAATGTAGTTGCCACATTAGTTTCCATCTTCACTGTTGACAAGTTTGG AAGAAGGATCTTGTTCCTTGAAGGTGGTGCCCAAATGCTTGTTTGCCAGATTGCTGTGGGAGCAATGATTGCTGCAAAGA TTGGACTAAGTGGTGATGGCTCATTCACCAAAGGAGAAGCCAACTTCGTCTTGTTTTTGATATGTGCATATGTTGCTGCA TTTGCTTGGTCCTGGGGCCCATTAGGATGGTTGGTGCCTACTGAAATATGCTCTCTTGAAGCTAGATCTGCAGGGCAAGC TATCAATGTTGCCGTGAACATGTTGTTTACATTTGCAATTGCTCAAGTTTTTCTCTCCATGCTTTGCCATTTGAAGTTTG GCCTCTTCTTCTTCTTTGGTGGCTTTGTCATTGTCATGACTATCTTTATTGCATTGCTCTTGCCTGAGACCAAGAATGTT CCAATTGAAGAAATGAACAGAGTGTGGAAGTCACACTGGTTCTGGGGCAAGTTCATTCCTGATGTCTGA
Protein sequence (LotjaGi2g1v0023100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGAFVPTGGGGGRQYEGKVTAFVLVTCFVAAMGGLLFGYDLGITGGVTSMEPFLIKFFSSVHRQMKDGSHHENQYCKF DNELLTLFTSSLYLAALVASFFASTTTRMLGRKPSMFLGGLFFLVGALLNGFAQNIKMLIAGRLLLGFGVGYSNQSVPVY LSEMAPAQIRGALNMGFQMMITIGILIANLINYKTSKLEHGWRISLGVGAVPAILLCLGSLFLGDTPNSLIERGQHENAK KMLQKIRGTVNVDEEYQDLVDASEEAKKVEHPWRNIMQPKYRPQLTFCSFIPFFQQLTGINVIMFYAPVLFKTLGFGSDA SLMSAVITGGVNVVATLVSIFTVDKFGRRILFLEGGAQMLVCQIAVGAMIAAKIGLSGDGSFTKGEANFVLFLICAYVAA FAWSWGPLGWLVPTEICSLEARSAGQAINVAVNMLFTFAIAQVFLSMLCHLKFGLFFFFGGFVIVMTIFIALLLPETKNV PIEEMNRVWKSHWFWGKFIPDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 5 | 498 | 494 | 2.5E-257 | – | |
| PANTHER | 5 | 498 | 494 | 2.5E-257 | – | |
| Gene3D | 17 | 492 | 476 | 4.3E-125 | – | |
| TIGRFAM | 19 | 485 | 467 | 8.4E-119 | ||
| Phobius | 21 | 41 | 21 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| SUPERFAMILY | 23 | 486 | 464 | 9.55E-58 | ||
| ProSiteProfiles | 28 | 478 | 451 | 44.13 | ||
| Pfam | 29 | 489 | 461 | 1.0E-127 | ||
| CDD | 31 | 476 | 446 | 0.0 | – | |
| PRINTS | 36 | 46 | 11 | 9.8E-27 | ||
| Phobius | 42 | 83 | 42 | - | – | |
| Phobius | 84 | 103 | 20 | - | – | |
| TMHMM | 85 | 104 | 20 | - | – | |
| Phobius | 104 | 114 | 11 | - | – | |
| Phobius | 115 | 133 | 19 | - | – | |
| TMHMM | 117 | 136 | 20 | - | – | |
| Phobius | 134 | 138 | 5 | - | – | |
| Phobius | 139 | 161 | 23 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| PRINTS | 140 | 159 | 20 | 9.8E-27 | ||
| ProSitePatterns | 145 | 170 | 26 | - | ||
| Phobius | 162 | 172 | 11 | - | – | |
| TMHMM | 169 | 191 | 23 | - | – | |
| Phobius | 173 | 192 | 20 | - | – | |
| Phobius | 193 | 203 | 11 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 204 | 223 | 20 | - | – | |
| Phobius | 224 | 284 | 61 | - | – | |
| TMHMM | 285 | 307 | 23 | - | – | |
| Phobius | 285 | 309 | 25 | - | – | |
| PRINTS | 295 | 305 | 11 | 9.8E-27 | ||
| Phobius | 310 | 320 | 11 | - | – | |
| Phobius | 321 | 343 | 23 | - | – | |
| TMHMM | 322 | 343 | 22 | - | – | |
| ProSitePatterns | 339 | 356 | 18 | - | ||
| Phobius | 344 | 349 | 6 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| Phobius | 350 | 375 | 26 | - | – | |
| Phobius | 376 | 386 | 11 | - | – | |
| TMHMM | 387 | 409 | 23 | - | – | |
| Phobius | 387 | 406 | 20 | - | – | |
| PRINTS | 391 | 412 | 22 | 9.8E-27 | ||
| Phobius | 407 | 426 | 20 | - | – | |
| PRINTS | 414 | 426 | 13 | 9.8E-27 | ||
| Phobius | 427 | 447 | 21 | - | – | |
| TMHMM | 429 | 448 | 20 | - | – | |
| Phobius | 448 | 452 | 5 | - | – | |
| Phobius | 453 | 474 | 22 | - | – | |
| TMHMM | 453 | 475 | 23 | - | – | |
| Phobius | 475 | 502 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0023100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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