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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0024700 |
| Transcript ID | LotjaGi2g1v0024700.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G02010.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510; TrEMBL-Plants: tr|I1MY75|I1MY75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0024700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8574900..8577787) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGTACATGGAAATATCTGAAAAGTTTTACAATGCTTTCAAGTTGTGTGGATCCTCCCACAAATCCCCACGCATTGC TCGCAAGCTTCATGCCCAGCTCATTCTCTCTGGTTTGGACGCTTCCATTTTCTTGCTCAACAATCTACTTCACATGTACT CCAACTGCGCCTTGATCGATGATGCTTTTCGCGTTTTCCGCGAGACCCATCATCGCAACGCCTTCACCTGGAACACAATG ATCCATGCCTTGGTTGATTCTGGAAAGATTATCGATGCAGAGAACCTGTTCGATGAAATGCCTGTTAGAATGAGAGACTC TGTTTCTTGGACCACCATGATGTCTGGCTATTGTCAAAACGGCCTCCCTGCAAAGAGCATCAAAGCTTTCACTTCAATGC TTCGTGACTCTGATTATCGAATTCAGAACTACGACCCCTTTTCGTTTACCTGTGCAATGAAGGCCTGTGGCTGCCTTGCC TCCACTCGTTTGGCTCTTCAGTTGCATGCCTATGTCATCAAGTTGAACTTTGGAACCCAAACATGCATTCAAAACTCCCT TGTTGATATGTACGTTAAGTGCGGAGCTGTAAATTTGGCAGAGACTGTTTTCTTCAACATTGAAAGCCCAAGTTTGTTTT GTTGGAACAGTATGATCTATGGTTGTTCGCAATTTTACGGACCCTATGAAGCTCTCCGTATATTCACCCAAATGCCTGAG CGGGACTCTGTTTCATGGAACACGCTGATCTCAGTTTTGTCTCAGCATGGCCTTGGGGTACGTTGTCTTAGCATGTTTGT AGAGATGTGCAATCAGGGTTGTAGACCAAATTTCATGACTTATGGCAGTGTCCTCAGTGCATGTGCCAGCATTTCTGATC TGGAATGGGGTGCCCATTTGCATGCTCGGATTCTTCGCGTGGAACATGGCCTGGATGCGTTTCTGGGTAGTGGTCTGATA GATATGTATGCCAAATGTGGATGCTTAAGACTGGCAAGGCGTGTGTTTGATAGTTTAGGGGAACGCAATCAAGTTACTTG GACTTGTTTGATCACTGCGATGGCACAATTTAGCCTTGATGAAGATGCTTTGGCACTGTTTAACCAAATGAGACAGGCTT CCGTGGTGTTGGATGATTTTACTCTTGCCACTGTTCTTGGGGTTTGTTCTGGTCAACATCATGCTGCAACCGGGGAACTG CTTCATGGATATACGATCAAAAGTGGGATGGATTCCTCTGTTCCTATAGGGAATGCGATCATTACAATGTATGCCAAGTG TGGAGATGCTGAGAAAGCTAATCTTGCATTTAGTGTTATGCCGCTTAGAGATACCATATCATGGACAGCTATGATCACCG CATTCTCTCAGAATGGAGACATTGATCGAGCCCGGGAATATTTCAATGCAATGCCCGAGCGTAATGTCATAACTTGGAAC TCCATGTTGAGCACATATGTTCAACATGGATTCTCAGAAGAAGGCCTCAAGTTGTATCTTTTGATGAGAAGCACAGGAGT CAATCCAGACTGGATCACTTTTGCAACATCAATCCGGGCCTGTGCTGACTTGGCTATTATAAAGCTTGGGATACAAGTTG TATCCCATACTATCAAGTTTGGGCTCAGTTCTGATGTTTCAGTTGCAAATAGTATTATTACCTTGTATTCGAGATGTGGA CTAATTGGAGAAGCACAGAAAGTTTTTGATTCAATACATGCCAGAAATCTGATTTCCTGGAATGCTATGATGGCAGCATT TGCTCAAAATGGTTTAGGTAGGAAAGTAATTGAAACATTTGAGGATATGCTGAAGACAGGGTGCAGACCTGATCATATAA GCTACGTTGCTGTTTTATCCGGGTGCAGCCACATGGGGCTTGTAGCCGAAGGGAAACATTACTTTGCTTCCATGACTGAC GTTTTTGACATTTCTCCGACAAGTGAACACTTTGCTTGTATGGTACATCTGCTTGGACGAGCAGGGCTCCTAGAGCAGGC AAAAAATTTGATAGATGGAATGCCATTTATGCCAAATGCCACTGTTTGGGGGGCTCTTCTAGGAGCATGCCGAATCCATC ATGATTCGAGACTAGCAGAAACTTCCGTGAAAAAGTTGATGGAATTAAATGTTGAAGATTCCGGAGGTTATGTCCTTCTA GCAAATATATATGCTGGCTCTGGAGAGTTGGAAAATGTTGCTGATATGAGAAAGCTGATGAAAGAAAAAGGAATTCGAAA GAGTCCAGGTTGTAGCTGGATAGAGGTTGATAACAGGGTACATGTGTTCACTGTGGAGGACACCAGTCATCCACAAATAA AGGAAATTTATGCAAAACTAGAGGAGATGATGAAGAAAATAGAAGATACAGGAAGATATATTAGTGAAGTCAGTTCTGCT CATCGGAGTCAGAGATACCACAGTGAAAAGCTGGCCTTTGCTTTTGGGTTGCTTAGTTTGCCATCTTGGATGCCCATACA TGTAATGAAGAATCTCCGAGTCTGCCCTGATTGTCACTTGGTAATAAAGCTTCTGTCATCTGTCACCTCAAGGGAACTTA TCATGAGAGATGGATATAGATTTCATCATTTCAAGGATGGGGTTTGCTCCTGTGGGGACTATTGGTAATCTCTGCTATGC CATCGGTATCTCCTCCATCTCCTATTGCTTTTTCTCTATCATTTTTCTTTCCTTCTCAAAAGCTGGCAATTGTTATTTAA AAGAATATATTAATTGTACTATAGTTATGAGGTCAGATTTTATTTAACTTAAATAGGAGTTCTGAATTGTAGTTCTTAAA AGATCAAAATTGCGAGAGGTCTGTAAAAGTTATTCCATCCATAAACTACTAACCAGTTCATACATTAACAAGCATCAATT GGCAGTAA
CDS sequence (LotjaGi2g1v0024700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTACATGGAAATATCTGAAAAGTTTTACAATGCTTTCAAGTTGTGTGGATCCTCCCACAAATCCCCACGCATTGC TCGCAAGCTTCATGCCCAGCTCATTCTCTCTGGTTTGGACGCTTCCATTTTCTTGCTCAACAATCTACTTCACATGTACT CCAACTGCGCCTTGATCGATGATGCTTTTCGCGTTTTCCGCGAGACCCATCATCGCAACGCCTTCACCTGGAACACAATG ATCCATGCCTTGGTTGATTCTGGAAAGATTATCGATGCAGAGAACCTGTTCGATGAAATGCCTGTTAGAATGAGAGACTC TGTTTCTTGGACCACCATGATGTCTGGCTATTGTCAAAACGGCCTCCCTGCAAAGAGCATCAAAGCTTTCACTTCAATGC TTCGTGACTCTGATTATCGAATTCAGAACTACGACCCCTTTTCGTTTACCTGTGCAATGAAGGCCTGTGGCTGCCTTGCC TCCACTCGTTTGGCTCTTCAGTTGCATGCCTATGTCATCAAGTTGAACTTTGGAACCCAAACATGCATTCAAAACTCCCT TGTTGATATGTACGTTAAGTGCGGAGCTGTAAATTTGGCAGAGACTGTTTTCTTCAACATTGAAAGCCCAAGTTTGTTTT GTTGGAACAGTATGATCTATGGTTGTTCGCAATTTTACGGACCCTATGAAGCTCTCCGTATATTCACCCAAATGCCTGAG CGGGACTCTGTTTCATGGAACACGCTGATCTCAGTTTTGTCTCAGCATGGCCTTGGGGTACGTTGTCTTAGCATGTTTGT AGAGATGTGCAATCAGGGTTGTAGACCAAATTTCATGACTTATGGCAGTGTCCTCAGTGCATGTGCCAGCATTTCTGATC TGGAATGGGGTGCCCATTTGCATGCTCGGATTCTTCGCGTGGAACATGGCCTGGATGCGTTTCTGGGTAGTGGTCTGATA GATATGTATGCCAAATGTGGATGCTTAAGACTGGCAAGGCGTGTGTTTGATAGTTTAGGGGAACGCAATCAAGTTACTTG GACTTGTTTGATCACTGCGATGGCACAATTTAGCCTTGATGAAGATGCTTTGGCACTGTTTAACCAAATGAGACAGGCTT CCGTGGTGTTGGATGATTTTACTCTTGCCACTGTTCTTGGGGTTTGTTCTGGTCAACATCATGCTGCAACCGGGGAACTG CTTCATGGATATACGATCAAAAGTGGGATGGATTCCTCTGTTCCTATAGGGAATGCGATCATTACAATGTATGCCAAGTG TGGAGATGCTGAGAAAGCTAATCTTGCATTTAGTGTTATGCCGCTTAGAGATACCATATCATGGACAGCTATGATCACCG CATTCTCTCAGAATGGAGACATTGATCGAGCCCGGGAATATTTCAATGCAATGCCCGAGCGTAATGTCATAACTTGGAAC TCCATGTTGAGCACATATGTTCAACATGGATTCTCAGAAGAAGGCCTCAAGTTGTATCTTTTGATGAGAAGCACAGGAGT CAATCCAGACTGGATCACTTTTGCAACATCAATCCGGGCCTGTGCTGACTTGGCTATTATAAAGCTTGGGATACAAGTTG TATCCCATACTATCAAGTTTGGGCTCAGTTCTGATGTTTCAGTTGCAAATAGTATTATTACCTTGTATTCGAGATGTGGA CTAATTGGAGAAGCACAGAAAGTTTTTGATTCAATACATGCCAGAAATCTGATTTCCTGGAATGCTATGATGGCAGCATT TGCTCAAAATGGTTTAGGTAGGAAAGTAATTGAAACATTTGAGGATATGCTGAAGACAGGGTGCAGACCTGATCATATAA GCTACGTTGCTGTTTTATCCGGGTGCAGCCACATGGGGCTTGTAGCCGAAGGGAAACATTACTTTGCTTCCATGACTGAC GTTTTTGACATTTCTCCGACAAGTGAACACTTTGCTTGTATGGTACATCTGCTTGGACGAGCAGGGCTCCTAGAGCAGGC AAAAAATTTGATAGATGGAATGCCATTTATGCCAAATGCCACTGTTTGGGGGGCTCTTCTAGGAGCATGCCGAATCCATC ATGATTCGAGACTAGCAGAAACTTCCGTGAAAAAGTTGATGGAATTAAATGTTGAAGATTCCGGAGGTTATGTCCTTCTA GCAAATATATATGCTGGCTCTGGAGAGTTGGAAAATGTTGCTGATATGAGAAAGCTGATGAAAGAAAAAGGAATTCGAAA GAGTCCAGGTTGTAGCTGGATAGAGGTTGATAACAGGGTACATGTGTTCACTGTGGAGGACACCAGTCATCCACAAATAA AGGAAATTTATGCAAAACTAGAGGAGATGATGAAGAAAATAGAAGATACAGGAAGATATATTAGTGAAGTCAGTTCTGCT CATCGGAGTCAGAGATACCACAGTGAAAAGCTGGCCTTTGCTTTTGGGTTGCTTAGTTTGCCATCTTGGATGCCCATACA TGTAATGAAGAATCTCCGAGTCTGCCCTGATTGTCACTTGGTAATAAAGCTTCTGTCATCTGTCACCTCAAGGGAACTTA TCATGAGAGATGGATATAGATTTCATCATTTCAAGGATGGGGTTTGCTCCTGTGGGGACTATTGGTCTGTAAAAGTTATT CCATCCATAAACTACTAA
Protein sequence (LotjaGi2g1v0024700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYMEISEKFYNAFKLCGSSHKSPRIARKLHAQLILSGLDASIFLLNNLLHMYSNCALIDDAFRVFRETHHRNAFTWNTM IHALVDSGKIIDAENLFDEMPVRMRDSVSWTTMMSGYCQNGLPAKSIKAFTSMLRDSDYRIQNYDPFSFTCAMKACGCLA STRLALQLHAYVIKLNFGTQTCIQNSLVDMYVKCGAVNLAETVFFNIESPSLFCWNSMIYGCSQFYGPYEALRIFTQMPE RDSVSWNTLISVLSQHGLGVRCLSMFVEMCNQGCRPNFMTYGSVLSACASISDLEWGAHLHARILRVEHGLDAFLGSGLI DMYAKCGCLRLARRVFDSLGERNQVTWTCLITAMAQFSLDEDALALFNQMRQASVVLDDFTLATVLGVCSGQHHAATGEL LHGYTIKSGMDSSVPIGNAIITMYAKCGDAEKANLAFSVMPLRDTISWTAMITAFSQNGDIDRAREYFNAMPERNVITWN SMLSTYVQHGFSEEGLKLYLLMRSTGVNPDWITFATSIRACADLAIIKLGIQVVSHTIKFGLSSDVSVANSIITLYSRCG LIGEAQKVFDSIHARNLISWNAMMAAFAQNGLGRKVIETFEDMLKTGCRPDHISYVAVLSGCSHMGLVAEGKHYFASMTD VFDISPTSEHFACMVHLLGRAGLLEQAKNLIDGMPFMPNATVWGALLGACRIHHDSRLAETSVKKLMELNVEDSGGYVLL ANIYAGSGELENVADMRKLMKEKGIRKSPGCSWIEVDNRVHVFTVEDTSHPQIKEIYAKLEEMMKKIEDTGRYISEVSSA HRSQRYHSEKLAFAFGLLSLPSWMPIHVMKNLRVCPDCHLVIKLLSSVTSRELIMRDGYRFHHFKDGVCSCGDYWSVKVI PSINY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 161 | 156 | 2.0E-22 | ||
| PANTHER | 14 | 107 | 94 | 1.4E-141 | – | |
| ProSiteProfiles | 42 | 72 | 31 | 6.873 | ||
| ProSiteProfiles | 73 | 103 | 31 | 10.238 | ||
| Pfam | 75 | 101 | 27 | 2.8E-6 | ||
| TIGRFAM | 75 | 100 | 26 | 2.2E-5 | ||
| ProSiteProfiles | 106 | 136 | 31 | 9.745 | ||
| TIGRFAM | 108 | 136 | 29 | 5.9E-5 | ||
| Pfam | 108 | 136 | 29 | 9.0E-6 | ||
| ProSiteProfiles | 145 | 179 | 35 | 5.503 | ||
| PANTHER | 149 | 244 | 96 | 1.4E-141 | – | |
| Gene3D | 178 | 295 | 118 | 6.7E-25 | ||
| ProSiteProfiles | 180 | 210 | 31 | 5.042 | ||
| ProSiteProfiles | 211 | 241 | 31 | 7.673 | ||
| Pfam | 214 | 241 | 28 | 0.014 | ||
| Pfam | 242 | 289 | 48 | 1.9E-9 | ||
| ProSiteProfiles | 242 | 276 | 35 | 10.72 | ||
| TIGRFAM | 244 | 277 | 34 | 6.1E-7 | ||
| PANTHER | 244 | 300 | 57 | 1.4E-141 | – | |
| ProSiteProfiles | 277 | 311 | 35 | 5.766 | ||
| Gene3D | 296 | 411 | 116 | 6.4E-16 | ||
| PANTHER | 300 | 392 | 93 | 1.4E-141 | – | |
| ProSiteProfiles | 312 | 342 | 31 | 6.785 | ||
| Pfam | 319 | 342 | 24 | 0.48 | ||
| ProSiteProfiles | 343 | 377 | 35 | 9.087 | ||
| Pfam | 345 | 373 | 29 | 0.0017 | ||
| TIGRFAM | 345 | 378 | 34 | 0.001 | ||
| PANTHER | 381 | 475 | 95 | 1.4E-141 | – | |
| Gene3D | 413 | 525 | 113 | 7.4E-27 | ||
| ProSiteProfiles | 413 | 443 | 31 | 5.821 | ||
| ProSiteProfiles | 444 | 474 | 31 | 10.041 | ||
| TIGRFAM | 446 | 475 | 30 | 2.3E-5 | ||
| PANTHER | 461 | 536 | 76 | 1.4E-141 | – | |
| ProSiteProfiles | 475 | 509 | 35 | 11.849 | ||
| Pfam | 475 | 522 | 48 | 1.1E-9 | ||
| TIGRFAM | 477 | 511 | 35 | 4.0E-7 | ||
| ProSiteProfiles | 510 | 544 | 35 | 5.426 | ||
| Gene3D | 526 | 641 | 116 | 6.9E-24 | ||
| PANTHER | 538 | 741 | 204 | 1.4E-141 | – | |
| ProSiteProfiles | 545 | 575 | 31 | 7.761 | ||
| Pfam | 550 | 575 | 26 | 0.035 | ||
| ProSiteProfiles | 576 | 610 | 35 | 11.751 | ||
| Pfam | 576 | 623 | 48 | 1.8E-10 | ||
| TIGRFAM | 578 | 611 | 34 | 2.3E-7 | ||
| ProSiteProfiles | 611 | 641 | 31 | 6.785 | ||
| Gene3D | 642 | 815 | 174 | 1.1E-10 | ||
| ProSiteProfiles | 647 | 677 | 31 | 6.204 | ||
| ProSiteProfiles | 713 | 747 | 35 | 7.64 | ||
| Pfam | 749 | 865 | 117 | 1.6E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0024700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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