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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0055600 |
| Transcript ID | LotjaGi2g1v0055600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic; TrEMBL-Plants: tr|K7MWI8|K7MWI8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0055600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:11208298..11210936) extracted from Lotus japonicus Gifu genome v1.2.
GTGCCATCAAAACAGGTCACAAGTTACCTTGAATTTCAACAATTTCATTCCTCTATGGGAATTCGAAACCTCTGCAAAAT CCTCAGGTTCTTCTCAACTCCTCACCCTTGCACCACTTTCCTCTTCGCTCACTTCTTCTCCAACGCCACCCCACCTTCAA CAACCCTTTTCCACTCTCCAACTTCGTGCTTCCATATTGATGATGGCCACTCATGCTTGAAGCTTGGTTTGCAGTTTCTC ACTCGTAGGTATTTTTCCTCGTACCCATGTTCTTCTTTTAAGGGTAGACCGTATGCTAGTGCGAAACAAGTTTCTGAAAT TGTTGCGTTGATTCGTGAGGGTGTGAATGATTTGGAGTTCAGCTTGAACAGGGTGAATGTGTCTTTGTCTATGGCATTGA TTGTTGAGATTTTTCATATATTGGCTAGTGAGAGAGTGTCTGCATTGCAGTTCTTTCATTGGCTTAAAGGTTCACACCCT GAGCTTTGTTGTGACCCTCAGATTGGTGGCTTGGTTGTTAATAATTGTGGGTTGTTGGGGAATTATGAGGCAATGGTTCC CATTTTGAATGAATTTAATCATAGAAGGGTGCATTTGGGAAGGAATGCATTTGGGTTCTTGTTGGTTTTGAATTTGGACA AGGCCTCTACTGTGGAATGTGTGAGGAAGATTATGGATGTGCTCAATGAGGTTGGTGGGTTGTGTCAAAGTTCTGGAATT CGGTTATTGATAGAGATGTTTACCTTTACGGGATCTTTTGATATAGTTGAGTATGTGATAGGAAAAGACAGGAGGAAGGT GAATCATTATAATGTCTTAATGAGGGCAGTGTGCAAGAAAGGGGATTATGAAAGAGCAGGGTTTTTGGTAAAGGAGATGA AAAGAAGTGGTTTCGACCCAGACATGACTACTTATAATTTGTTAGTCAGTTGTCTATGCAAGAATGGCAAATTTGCTGAA GCTTGCCAAGTTCTTGAAACTGTGGAAAAGGACCACGGTTTACCCAAAGAGTTTAACTATAATATTCTTATTAGCTTGTT ATGTAAACATGGCCAGTTTGATTTAGCTCGGAAGTTTCTTGACAAAATCACATTGAAGGGTATTGAGCCGTGTATATTAA CTCATGCTGCTGTAATAAAGTCTTATTTTGAATTGGGAAAATATGAGGAAGCCCATGAATATGTGGTTGGTTCTGCTAGT AAGCAGAGCTATTCCAGCAATGCCAACTATAGCTTACTTGCTACTCTTCATTTGAAGAAAGGAAATATGCTACTTGCCCA AAAGATTCTTTATGAGATGATGGACAAGGGTCTCAAACCTAATTTTTCAGTGTTCAATAAGGTAAGGAAGTGTCTTGAGA AGAAAAATGAAATAGGTTTGTCTTTGGAATTATCAAGAAGATACTTGAGCTTGATTGAAAAATGAAGGAACATGCTGGAT CTTGTGTCACAAGATGCTGTAGTCTCTGTCAGTTTTTGCTTCATAGTCACTCGGCATTTGGAGAGTTTGGGCTCGAGATA TTTGCTTCTTCACTTTTTCCGGGTATTCAGTTATTTACTACTCCATTTTAGGTATTGATTACCAATACTGAGAAAATTGC TCTCTTTTTCATGATCTTTTTTATGCTATGATGACAGAAACTCGCCTAAAGTGGCTTGTCATGTGAGAAGAAGACTAATA AAGGCTCTTCAAATGGAGAAGGCGGGTCATATCAGATGAAAGGTATTCTGGTTAAAAGGGGTAAAGGAAGATTACTTTGC AAGACACCACTAAAAAGACATGACTCTAAATTATTTCACTGGAAATGAAGCTCAGTGAAGTCTGTAGAAGAAAGTTTGGT TGTTGTGGACAGGAGTGGAGGATAGTGTATGTCCATGAGGGCTGTGCATCCCCACTCCCTCCCCAAATTTTCCCAAACAA CCATTTTTGTAATATTTTTCCTGAAAATAGTGGAGATAGTTAAGCTTTGCGGGATAAACAAAGTGTTGTCTGTTCCCTTT GCTGCCTCGTTCAAAATTCTGTAGCTCCATCCTTTGCTGTTGATCTCTTCTTGATATTTTCATATTTTATTGTCTGTGTT ACATTTATTCCAAGTTTCTTACTCGCCAGAAAAAAAAGCATAGAAGGTAAAAAAAGAGAGAGTGAGAACTTGAAATGTAA CCTTTTATCTTTGGCAGAAGAAGTGGACTAGTCAGTAAAGATCATGCACCTCGTCCATTGCATGTCCATTTCATATTCTT CTCTTTTTATTGTCGTTTTCAGTCCCTTCCGTCCTCCAAATATTACTAGCCTTGTTTTGTTTGTATAGTTGTGTAGTATA TGTTAGTAATGTTACACTTTCCAGTTATAGCAATTGTCCTTTGGGTGCAACTAGTGGTATTTGTACAATTTAATCAGACC ATTTAATACTGTGATTTCGAGGATGGGATGAGGGGTGATAACAGATTATATAAACAACTGGATTTTTAGATGAGCATGAT ACTTTAACTTTCACTCTCCAACACCCTTATGATTTGGACATCATCCTCATGCTGCAACTCAAGCTTATGGTGTGTACCTC TTTCCCTTGAACCAACCTGTTTTGGTGTCCCCAGGTAAGTTCTTTCAGTGATCTTGTTAATATTAATTTTTTTTCCTGC
CDS sequence (LotjaGi2g1v0055600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATTCGAAACCTCTGCAAAATCCTCAGGTTCTTCTCAACTCCTCACCCTTGCACCACTTTCCTCTTCGCTCACTT CTTCTCCAACGCCACCCCACCTTCAACAACCCTTTTCCACTCTCCAACTTCGTGCTTCCATATTGATGATGGCCACTCAT GCTTGAAGCTTGGTTTGCAGTTTCTCACTCGTAGGTATTTTTCCTCGTACCCATGTTCTTCTTTTAAGGGTAGACCGTAT GCTAGTGCGAAACAAGTTTCTGAAATTGTTGCGTTGATTCGTGAGGGTGTGAATGATTTGGAGTTCAGCTTGAACAGGGT GAATGTGTCTTTGTCTATGGCATTGATTGTTGAGATTTTTCATATATTGGCTAGTGAGAGAGTGTCTGCATTGCAGTTCT TTCATTGGCTTAAAGGTTCACACCCTGAGCTTTGTTGTGACCCTCAGATTGGTGGCTTGGTTGTTAATAATTGTGGGTTG TTGGGGAATTATGAGGCAATGGTTCCCATTTTGAATGAATTTAATCATAGAAGGGTGCATTTGGGAAGGAATGCATTTGG GTTCTTGTTGGTTTTGAATTTGGACAAGGCCTCTACTGTGGAATGTGTGAGGAAGATTATGGATGTGCTCAATGAGGTTG GTGGGTTGTGTCAAAGTTCTGGAATTCGGTTATTGATAGAGATGTTTACCTTTACGGGATCTTTTGATATAGTTGAGTAT GTGATAGGAAAAGACAGGAGGAAGGTGAATCATTATAATGTCTTAATGAGGGCAGTGTGCAAGAAAGGGGATTATGAAAG AGCAGGGTTTTTGGTAAAGGAGATGAAAAGAAGTGGTTTCGACCCAGACATGACTACTTATAATTTGTTAGTCAGTTGTC TATGCAAGAATGGCAAATTTGCTGAAGCTTGCCAAGTTCTTGAAACTGTGGAAAAGGACCACGGTTTACCCAAAGAGTTT AACTATAATATTCTTATTAGCTTGTTATGTAAACATGGCCAGTTTGATTTAGCTCGGAAGTTTCTTGACAAAATCACATT GAAGGGTATTGAGCCGTGTATATTAACTCATGCTGCTGTAATAAAGTCTTATTTTGAATTGGGAAAATATGAGGAAGCCC ATGAATATGTGGTTGGTTCTGCTAGTAAGCAGAGCTATTCCAGCAATGCCAACTATAGCTTACTTGCTACTCTTCATTTG AAGAAAGGAAATATGCTACTTGCCCAAAAGATTCTTTATGAGATGATGGACAAGGGTCTCAAACCTAATTTTTCAGTGTT CAATAAGGTAAGGAAGTGTCTTGAGAAGAAAAATGAAATAGGTTTGTCTTTGGAATTATCAAGAAGATACTTGAGCTTGA TTGAAAAATGA
Protein sequence (LotjaGi2g1v0055600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIRNLCKILRFFSTPHPCTTFLFAHFFSNATPPSTTLFHSPTSCFHIDDGHSCLKLGLQFLTRRYFSSYPCSSFKGRPY ASAKQVSEIVALIREGVNDLEFSLNRVNVSLSMALIVEIFHILASERVSALQFFHWLKGSHPELCCDPQIGGLVVNNCGL LGNYEAMVPILNEFNHRRVHLGRNAFGFLLVLNLDKASTVECVRKIMDVLNEVGGLCQSSGIRLLIEMFTFTGSFDIVEY VIGKDRRKVNHYNVLMRAVCKKGDYERAGFLVKEMKRSGFDPDMTTYNLLVSCLCKNGKFAEACQVLETVEKDHGLPKEF NYNILISLLCKHGQFDLARKFLDKITLKGIEPCILTHAAVIKSYFELGKYEEAHEYVVGSASKQSYSSNANYSLLATLHL KKGNMLLAQKILYEMMDKGLKPNFSVFNKVRKCLEKKNEIGLSLELSRRYLSLIEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Gene3D | 197 | 314 | 118 | 5.1E-16 | ||
| SUPERFAMILY | 246 | 419 | 174 | 4.45E-5 | – | |
| PANTHER | 248 | 343 | 96 | 5.6E-38 | – | |
| ProSiteProfiles | 248 | 282 | 35 | 11.422 | ||
| PANTHER | 248 | 343 | 96 | 5.6E-38 | – | |
| Pfam | 249 | 296 | 48 | 6.6E-12 | ||
| PANTHER | 249 | 440 | 192 | 5.6E-38 | – | |
| PANTHER | 249 | 440 | 192 | 5.6E-38 | – | |
| TIGRFAM | 252 | 283 | 32 | 3.0E-6 | ||
| ProSiteProfiles | 283 | 317 | 35 | 10.896 | ||
| TIGRFAM | 286 | 309 | 24 | 1.2E-5 | ||
| ProSiteProfiles | 318 | 352 | 35 | 11.137 | ||
| Gene3D | 318 | 448 | 131 | 4.4E-16 | ||
| Pfam | 322 | 350 | 29 | 6.9E-5 | ||
| TIGRFAM | 322 | 352 | 31 | 3.8E-6 | ||
| ProSiteProfiles | 353 | 383 | 31 | 5.097 | ||
| ProSiteProfiles | 388 | 422 | 35 | 8.517 | ||
| Pfam | 392 | 420 | 29 | 0.95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0055600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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