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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0059400 |
| Transcript ID | LotjaGi2g1v0059400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integral membrane HRF1 family protein; TAIR: AT1G30890.1 Integral membrane HRF1 family protein; Swiss-Prot: sp|Q6GN58|YF1BA_XENLA Protein YIF1B-A; TrEMBL-Plants: tr|I3SF42|I3SF42_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0059400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12360447..12363329) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATAATAACGTTGGATCCCAACCTGGGGTGCCACAGCCTCCAACAAGTTCACAAGCGAATCCTTTTGGGAATGCATT TCAAGTTGCTGGTTCAGGACTTATTCGAGGTGGACTGGGTGCCTATGGAGGAAAGATTTTGGGATCAAGCTCTGAGTATG TCCAAAGCAATGTAAGTAATAACTAGCATTCTATTTTCTCTTCCTAATGATTTAATTTTCCATGTGACTCGTTACATCTT TTGATGTTCCTTAAACATTGATATTGAGGAAATACTCAAATATTTCTACTTTTTATATCTCATTCTTATATCGCATATGC TCTCTCACCTGCAATCATGATTATATAATATATATATATATATATATATATATATATATATCATATATATATCATATATA TATATATATATATATCAATCAGTTTAGGCTCAACTAATGTTGGAGGGGAAAACCATTGTAGCAAAAAAAAATACATCAAA GTGCTTAATTGACCTTTATTTGCTATCTTTGCTGACCTCAATTATAAATGTTCTCTTAAGGTGTTAAGTCAAGGTTTTCA TTTTTAAATTAATATTCTCTATTGAATTACAGATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGAC CATTATGTTAAGAACAAATTGAAGGTGGTTTTGTTTCCATTTCTACACAGGGTAAACTGTAACATCAAACTCTTCTTCAT TTCTTTTCTTTTATTTTCATTTGATAATCTTATTTTATCTTCATGCTGTCTTATCTGTTTTTTTTTTATGGTTCAGGGCC ACTGGACTAGAATTACTGAGCCAGTCGGGGGTAGGTTGTCCTATAAACCACCTATTTATGACATAAATGCACCAGACCTA TACATTCCATTGATGGCATTCGGTACCTACGTTGTTCTTGCTGGCCTCTCATTGGGTCTTCATGGAAAGTAAGTGCTTCT CTGTGTCCTCTACCTTAATCCCATATTATTTAGGGGACATATTCTATTTGTTTTTCACAAATTTACAGATAGAAATCTTC ATGAAAAATAGAGTTTCCTCTTCCCCTTCCTCTCAAAATTTATAACTTGTGTTTCTTCATTCTTACATCATTGAGTGTTG TTCTTTGTTGGTAGAGTTGAGAAGTTCTGCATTGACTAGAGATATGGGCCAATAAGTGTTTATAAATTGTATAGCAACCT TCCCCTCTAAGCTAGCATTTGAGGTAGAGTTAGGCTTTACCCAAATTCTAATATGGTATCAAAAGTCTATTTTATTGCAT ACCACCCATATATGAGCCACCGGAAGATGTTCATTCCTGCAGATCCCATGCTCCAAATGTCTTCCTTGGGCGTGATGGGG TGTGTTGAGAAGTCTCATTGGCTAGAGATAAATGGGAAGTCAGTCCTCACCTCTAAATTAGCTTTTGGGGTAGAGTAAGG TCTTAGACTCTTAGCCAAATTCTAATAGGTAGGGTTAGAAATCACCATAAATTTTAGCTGAATAAATTTTCCTGCTCATG CTAAAACACCTGTTATTGATATTACTTTTCAAAATTGACTTTAGGACTCACAAGTAATGGAATGCTACTTACACTAGAAA TTAGGGCTCTTGAACTGTTAGGGATTACAATAATCATATACTGTTTTATCTTTATTCTCGTTAATATTGAGGCAGTTGAT GGATTTGTTTTCGTTCTTCTAATTTCACTATTCTGTTGTGTGAATGTGAATTTTTTAATTGTTCCATGATCACTATTTGT GTGGTATGGCTGCGGCCGTTGGAGGGGAATACATGTTGCCACCTACTGGTGCAATAACACACAGTACTCTGTTAGCAGTT TTGATTACATGAGCTTTTCTAATTGTTATTTTTCAGATCCAAATTAACTTTATGTTGTGTTTCCAACAAAAGAAATTGTA AGCACATTTTCGGAAGCCAATCCATATAAGTTTTTTTTAGCTTCATAGATGTTATAGAGATTGCTAATTATTATTTCATG CTTGTTATTTTCAAATTTTCAAGATTGTGTTGTGTCAACTGTCTAGTTACACTGAGATTTCTGTTTAGTTCATATAACTC ATTTCTATCTCTATTCTCTTCCATAGTGATAGGCAATAAGAAGAAAGAAAAATATATTATTCAATAATATCAAACTAGAG TGGTTGCTGATTAATTCGAGAGTTTCAGCAGCTCTCCCTAATTCTGAATTACAAATACAAATGATCCCAAAGATGATCTT TTTCACTAACTATCTCTTATAACATTTCCTCTCTCACCTTCTAACTAACACTGACTAACTAGAGCGGCCTCTGCTAACTA ACTAAACTACTAGCTAACTATTCTTATCTATCTCATGCTTTGTCATGGTTTCTCCCTCTAACTAGCTCCCTCTAACTAAA ACTGCCTCTGCTAACTAACTAAACTACTAGCTAACTATGCTTATCTATAACATGCTTTGTCATGGTTTCCTTAAAGATGT TGTATTTATGTCCAGGTTTAGTCCAGAGGCTTTGAACTTGTTATTCATCAAGGGATTGCTTGGTTGGTTTATGCAAGCCT CACTGCTTAAGATGACTTTGCTTTCACTGGGCAGTGGGGAAGCTCCACTGCTGGACATCATAGCATATGCTGGATATACT TTCACTGGCATATGTTTGGCTGTTCTTGGAAGAATAATTTTGGGCTACTCCTACTACTTTTTGATGCCATGGACCTGTTT ATGCATGGCAGTATTTTTGGTGAAAACAATGAAGAGAGTTCTTTTTGCGGAGGTTAGGACTTATGACTCCAGCAAACACC ACTATCTCTTGCTCTTCATTGCTTTGGTCCAGTTCCCATTGTTCACATGGCTTGGCAACATTACTGTCAATTGGCTTTTA TAG
CDS sequence (LotjaGi2g1v0059400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAATAACGTTGGATCCCAACCTGGGGTGCCACAGCCTCCAACAAGTTCACAAGCGAATCCTTTTGGGAATGCATT TCAAGTTGCTGGTTCAGGACTTATTCGAGGTGGACTGGGTGCCTATGGAGGAAAGATTTTGGGATCAAGCTCTGAGTATG TCCAAAGCAATATAAGCCGGTATTTCTCTGATCCCCAATACTACTTTCAAGTGAATGACCATTATGTTAAGAACAAATTG AAGGTGGTTTTGTTTCCATTTCTACACAGGGGCCACTGGACTAGAATTACTGAGCCAGTCGGGGGTAGGTTGTCCTATAA ACCACCTATTTATGACATAAATGCACCAGACCTATACATTCCATTGATGGCATTCGGTACCTACGTTGTTCTTGCTGGCC TCTCATTGGGTCTTCATGGAAAGTTTAGTCCAGAGGCTTTGAACTTGTTATTCATCAAGGGATTGCTTGGTTGGTTTATG CAAGCCTCACTGCTTAAGATGACTTTGCTTTCACTGGGCAGTGGGGAAGCTCCACTGCTGGACATCATAGCATATGCTGG ATATACTTTCACTGGCATATGTTTGGCTGTTCTTGGAAGAATAATTTTGGGCTACTCCTACTACTTTTTGATGCCATGGA CCTGTTTATGCATGGCAGTATTTTTGGTGAAAACAATGAAGAGAGTTCTTTTTGCGGAGGTTAGGACTTATGACTCCAGC AAACACCACTATCTCTTGCTCTTCATTGCTTTGGTCCAGTTCCCATTGTTCACATGGCTTGGCAACATTACTGTCAATTG GCTTTTATAG
Protein sequence (LotjaGi2g1v0059400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNNVGSQPGVPQPPTSSQANPFGNAFQVAGSGLIRGGLGAYGGKILGSSSEYVQSNISRYFSDPQYYFQVNDHYVKNKL KVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPLMAFGTYVVLAGLSLGLHGKFSPEALNLLFIKGLLGWFM QASLLKMTLLSLGSGEAPLLDIIAYAGYTFTGICLAVLGRIILGYSYYFLMPWTCLCMAVFLVKTMKRVLFAEVRTYDSS KHHYLLLFIALVQFPLFTWLGNITVNWLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 269 | 269 | 5.3E-178 | ||
| Phobius | 1 | 117 | 117 | - | – | |
| PANTHER | 1 | 269 | 269 | 5.3E-178 | – | |
| Pfam | 42 | 260 | 219 | 1.3E-57 | ||
| Phobius | 118 | 140 | 23 | - | – | |
| TMHMM | 118 | 140 | 23 | - | – | |
| Phobius | 141 | 145 | 5 | - | – | |
| Phobius | 146 | 165 | 20 | - | – | |
| TMHMM | 147 | 164 | 18 | - | – | |
| Phobius | 166 | 176 | 11 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 177 | 199 | 23 | - | – | |
| Phobius | 200 | 204 | 5 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 205 | 223 | 19 | - | – | |
| Phobius | 224 | 243 | 20 | - | – | |
| TMHMM | 243 | 265 | 23 | - | – | |
| Phobius | 244 | 268 | 25 | - | – | |
| Phobius | 269 | 269 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | ER to Golgi vesicle-mediated transport | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. |
Expression pattern of LotjaGi2g1v0059400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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