Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0060700 |
| Transcript ID | LotjaGi2g1v0060700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat F-box protein; TAIR: AT3G63220.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30; TrEMBL-Plants: tr|A0A151RU54|A0A151RU54_CAJCA F-box/kelch-repeat protein SKIP30; Found in the gene: LotjaGi2g1v0060700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12911948..12914510) extracted from Lotus japonicus Gifu genome v1.2.
AACCAAACACAACATTCTGATTTGTTGACATTCACATTCGCATATTATCCTTCCTCAGTTTTCCTGTCTCTGTTGAAGCT TACAAGCTCTTCTGATTCATCTCATCATTCATCAATTCCTTTTCGTATTCCTTTCTCTTCTTCGCTGCCAGGTAAACAAT CTAATTGTTCTGAGTGATGATTGATGCTTAATCTTGAATTTCAACTGAGCTTTACCCTATTTTTGTTCCTGCCCCTTCAT TATTTTGTCTGCTTTTTCATTCTAGTAGTGATAAATGTTAGGGCTGGAATCCCAATTTGAATTATAAAAGTTTGTTTTGT TCAATTGTTTGTGCTGTGTATGATGAAGTGGCTCATGAATCTAAGTCACAGGTTGGGTGGTTCTTTTTTAATGATAAAGC AATCAACTTGTTCATGAATCTAAGTCCCCAATTTGAATTCTATAAGCAATCAACATGTTCATTGCTTATCATTGTGCTCT TATGCAGTCTCAATTTTACGGTTGGATGAAGAAGGTAGATAAAATGCTAACTGATGATTGAAGCTTGAAAACTTAGAGAA GACATAGTTGTAAGAGGGTTAAGATGTGAGATACTTTAGGGGGATTTTTTTGGCTTGAGATTGCACAATCATTTTATCTT TGGTTGATTCTCAGGAAGACACTATTAAGTGCAAGTGTCTACGCGGACAACATGACTTCTACCATACGTGTCTGTATGTG TCCCTATGTTAAACTAGTTAGTTACTGAATACCAATCATAAATTGTATCCAATTGCACTGCTTTTGTTGTCATTGTTACT ACTGTTTATTTCATTGAACAAAAAGTTTATTCTAAAATTTGTTTCTGATACCTAAGTGACGGAAACCTATCATGTTTTGT AATTTGTATACAAGAAAGTTTATTTCAAACTTCCTATGTGCCACTCTAATGACACCATGCCTTTCAAAATTTAGTACTGC TTCTAATATATTGCATTTTTTTCTCATATATCATCACAATATCAGCAAAAGTTGCTGGATAAATATTGTGACTGCAGGTA CACCTCTCATAATAGCAGGAGATCTTGGTGGAGACTTATTAGACATTAATGAAATAGTGGTTATTATAAATTTATAATGT CTGGACTTATTGAAGGACTTCCTGATGATGTTGCAATTAGGTGCCTTGCACGTGTTCCCTTCTACCTCCACCCAAAATTA GAGCTCGTCTCTCGATCTTGGCAAGCTGCCATTCATAGCCCCGATCTATTTAAAGCTCGGCAGGAGGTAGGCTCATCGGA GGAGCTGCTGTGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGATTTATGATCCTCTAAGAGATCTCTGGATTACAC TTCCTGTTCTTCCCTCAAAGATCAGGCACCTCTCTAACTTTGGTGCTGTTTCTACTGCTGGAAAGTTGTTTGTGATTGGT GGTGGAAGGGATGCTTTTGTAGATCCTCTGACCGGTGACCAAGATGGATGTTTTGCATCCGATGAAGTCTGGTCATATGA CCCTGTAGTCCGGCAGTGGGGCCCTCGGGCATCAATGCTTGTTCGACGTTATAAGTTTGCATGCTGTGTTCTTAATGGGA AAATTGTTGTGGCTGGGGGCTTCACTAGCTCTGGAGAATCAACATATCAAGCAGAAATGTATGACCCTGAGAAGGATGTT TGGATCGCGATGCCTGATCTTCATCCTGTTTATAACTCAGCCTGTTCGGGAGTAATGATTGGTGGGAAGGTGCATGTACT GCACAAGGGTTTGTCAACAGTTCAAGTTTTAGACAATGCAGGTGCTCGGTGGATTCTTGAGGACTGTGAGTGGCTCCAAG GTCCAATGGCAGTTGTCCAGGATGCAGTTTATCTGATGAGCCATGGACATATCCACAAGCAGGAGAAAGACGGGATGAAG GTTGCAGTTTCAACATCTAAGTTTGGAAGGAGATTTTGGTTTGCAATGATTGGCCTAGGTGATGATTTATATGTGATTGG AGGCCTCTCCTGCTATGACGGCATGAAGCTATTATCCGATGTTGATGTTCTCACGCTTGGGACTGAGAGACCAACTTGGC ACCAGGCTGCTCCGATGACACGGTGTCGTGGTATAATTCGTGGTTGTACACAGCTGAGAATTTAGACCACCTCTTTAGGT AGCTATTGTGTATTTTGTGTTCATAGGGGATTTGTACCCTTCAACTAGACATGAACATTTTGTTGATTACATGCGGTGGT GAGGTTAGTAGTTTCTGTATCTGTTCTGTTCGAAGCAGAACAGGCTATAAATATAGAATAAGGATTGGTGTAGTATTAGA ATTATATATCATGTCTTTTACGATCAGTTATGTTTCTATTTCATTAAAATGTGTATTATACATGCAAATTGGTTCCAAAA ATAGTCTTATAAACAAGGCTAAGGTTTGTGAACAAAATTTAAATTTAGAGAGAAAGATAGAGAAAATACTGGAATATAGT AGAATGATGCTATATCGTTGGCTTGAATCAGCCCTTGATTTAGTTTACAAAATAATCAGGGATCTTAAGGTACTCATTGC TGG
CDS sequence (LotjaGi2g1v0060700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGACTTATTGAAGGACTTCCTGATGATGTTGCAATTAGGTGCCTTGCACGTGTTCCCTTCTACCTCCACCCAAA ATTAGAGCTCGTCTCTCGATCTTGGCAAGCTGCCATTCATAGCCCCGATCTATTTAAAGCTCGGCAGGAGGTAGGCTCAT CGGAGGAGCTGCTGTGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGATTTATGATCCTCTAAGAGATCTCTGGATT ACACTTCCTGTTCTTCCCTCAAAGATCAGGCACCTCTCTAACTTTGGTGCTGTTTCTACTGCTGGAAAGTTGTTTGTGAT TGGTGGTGGAAGGGATGCTTTTGTAGATCCTCTGACCGGTGACCAAGATGGATGTTTTGCATCCGATGAAGTCTGGTCAT ATGACCCTGTAGTCCGGCAGTGGGGCCCTCGGGCATCAATGCTTGTTCGACGTTATAAGTTTGCATGCTGTGTTCTTAAT GGGAAAATTGTTGTGGCTGGGGGCTTCACTAGCTCTGGAGAATCAACATATCAAGCAGAAATGTATGACCCTGAGAAGGA TGTTTGGATCGCGATGCCTGATCTTCATCCTGTTTATAACTCAGCCTGTTCGGGAGTAATGATTGGTGGGAAGGTGCATG TACTGCACAAGGGTTTGTCAACAGTTCAAGTTTTAGACAATGCAGGTGCTCGGTGGATTCTTGAGGACTGTGAGTGGCTC CAAGGTCCAATGGCAGTTGTCCAGGATGCAGTTTATCTGATGAGCCATGGACATATCCACAAGCAGGAGAAAGACGGGAT GAAGGTTGCAGTTTCAACATCTAAGTTTGGAAGGAGATTTTGGTTTGCAATGATTGGCCTAGGTGATGATTTATATGTGA TTGGAGGCCTCTCCTGCTATGACGGCATGAAGCTATTATCCGATGTTGATGTTCTCACGCTTGGGACTGAGAGACCAACT TGGCACCAGGCTGCTCCGATGACACGGTGTCGTGGTATAATTCGTGGTTGTACACAGCTGAGAATTTAG
Protein sequence (LotjaGi2g1v0060700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGLIEGLPDDVAIRCLARVPFYLHPKLELVSRSWQAAIHSPDLFKARQEVGSSEELLCVCAFDPENLWQIYDPLRDLWI TLPVLPSKIRHLSNFGAVSTAGKLFVIGGGRDAFVDPLTGDQDGCFASDEVWSYDPVVRQWGPRASMLVRRYKFACCVLN GKIVVAGGFTSSGESTYQAEMYDPEKDVWIAMPDLHPVYNSACSGVMIGGKVHVLHKGLSTVQVLDNAGARWILEDCEWL QGPMAVVQDAVYLMSHGHIHKQEKDGMKVAVSTSKFGRRFWFAMIGLGDDLYVIGGLSCYDGMKLLSDVDVLTLGTERPT WHQAAPMTRCRGIIRGCTQLRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 342 | 342 | 3.9E-152 | – | |
| PANTHER | 1 | 342 | 342 | 3.9E-152 | – | |
| SUPERFAMILY | 4 | 47 | 44 | 6.02E-5 | ||
| SMART | 8 | 48 | 41 | 4.9E-4 | ||
| Gene3D | 28 | 237 | 210 | 4.0E-34 | ||
| SUPERFAMILY | 61 | 331 | 271 | 7.19E-43 | ||
| Pfam | 92 | 147 | 56 | 1.2E-6 | ||
| SMART | 103 | 161 | 59 | 0.0026 | ||
| Pfam | 150 | 195 | 46 | 5.0E-11 | ||
| SMART | 162 | 209 | 48 | 0.0012 | ||
| Gene3D | 238 | 338 | 101 | 9.7E-6 | ||
| SMART | 290 | 341 | 52 | 2.1 | ||
| Coils | 342 | 342 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0060700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…