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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0066700 |
| Transcript ID | LotjaGi2g1v0066700.3 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase 3; TAIR: AT2G01630.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3; TrEMBL-Plants: tr|K7MHH3|K7MHH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0066700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:15629606..15631902) extracted from Lotus japonicus Gifu genome v1.2.
CTGCAGATGCTTTTATCGGTGTCAACATTGGTACAGATGTCACTAACATGCCATGTCCAACTGAGGTTGTGGCCCTTCTT AAGGTCCAAAGCATCCAACATGTCAGACTCTATGACGCTGACCGAAACATGCTTCTCGCACTTGCCAAGACAGGAATCAG TGTAATTGTTTCTGTTCCCAATGATGAAATCCTCGGCATTGGCCAGTCCAACACCACGGCCGCCAATTGGGTTGCTCGTA ACGTTGTAGCTCATGTCCCAGCCACTAACATCACTGCCATAGCGGTCGGATCTGAAGTCTTAACAACACTGCCAAATGCA GCCCCTGTCCTTGTCTCCGCTCTGAAATTCATCCAATCCGCTCTTGTTGCAGCTAATCTGGACGACCAAATCAAGGTCTC CACCCCACACTCTTCTTCTGTCATCCTCGACTCCTTCCCGCCTTCTCAGGCGTTTTTCAACCGCACTTGGAACCCCGTCA TGGTTCCCTTGCTTCAATTTCTGCAGTCAACAGGTTCATATCTTATGCTCAATGTGTACCCTTATTATGATTACAGGCTA TCAAATGATGTGATTCCTCTGGATTACGCTCTGTTCCGTCCCCTGCCTTCGAATAAGGAAGCTGTTGATACCAACACTCT CCTGCATTATACTAATGTCTTTGATGCAGTTGTTGATGCTGCTTATTTTGCAATGTCATATTTAAATTTCACCAATATCC CTATTCTAGTCACTGAGTCAGGATGGCCCTCCAAAGGTGACTCGTCCGAGCCAGACACAACTCCTGATAATGCGAACACT TACAATAGTAACTTGATCAGGCATGTCCTTAACAACACGGGGACTCCAAAGAAACCGGGAGTTTCTGTTAGCACGTATAT TTATGAGCTTTATAACGAAGACTTAAGATCTGGTCCGGTCTCTGAGAACAACTGGGGGTTATTTTATGCTAATGGAGCAC CAGTATATACCTTGCACTTGAGTGGTGCTGGTACTATATTTGCAAACGACACGACGAACCAAACCTTTTGCGTTGCCAAG AATAATGCCGATACTAAGATGCTTCAGGCTGCGCTTGATTGGGCTTGTGGACCTGGGAAGGTGGATTGCTCGCCTTTGCT GCAGGGTCAACCGTGTTATGAACCGGATAATGTTATTTCACATGCTACGTATGCTTTCAATGCGTATTATCAGCTGATGG ATAAATCTTCTGGTACTTGTGATTTCAAAGGGGTTGCCTCTGTCACCACCACAAACCCAAGTAAGAAATCTTTACATTTT ATAAATATCTACAAGTTAAGTTGACTACAAAAGAATAAAAATAGTGGTATTCAACTATCCTCGTTGATCAGATTGTTTCT CAAAACTATCTGTTGAAATTATACATTTATATGCCAATTTTATATGTTTATTATTATTACTATTACTTTTTAAAATGTTA TGTGTTTGTTTCTTTAGTCTCTTAGCTTTGCATCAAAGAAATTTATGATCATTATTTTAATTCCAGTTGCTCCTATGTTT CCTTAGTGATTGCAATCTTTTTACTTATCATTTAGTTTCATTAATTATGAATAAATCTATGGCCATTTTAGTGGTCATCT CTACTTCACCATTGCTTGTTAGTCCAAGTAATTTGGAGCTTGGTTTCACTTAAGTAACTTGTGTCTGAGTCTTGTAAAAA TAAGTGCTAGAAACAGCCGAGTCGAATTAGTCACGGTCCATAGTGGATATTGAGGGTCTACAAAAACTATTCTAGTTACT TTTGCAACCTTTTTTCTTTCTTGGTCATTTTCAGTTGACTTGTATTGTGTCAAAGAAACTCTTGCATTCGCAGATCTCAT TCAAGTTGCTTAGCATTTTAATATAACTGATAGTTTCTGTATTATCATTGCTACAGGTCATGGTTCCTGTACATTTTCAG GAAGGTATGATGATCTCAAACTTATCTTTATATGTGCTTGTTGTTGTTCTATTTTCCGATTCTATGAGTTGCTTTTCATG TTCTAGTGATGTCTTTTTTTTATTTCTCATCTCATCAACTATAAAAGCTGTCAAGTTGCTGCTGCATGTAAAGATAGCAT GTTCTTCTCATTTGAATTTTTTTCTTATATATTTCTCCTTTACGTATTTGTGGTGAATAGTGGTGGTAAAAATGTTACCA GCATTAATGGCACAGAAGCAGAACTGGCCCCCTCTACCAATTCTACAAATTCAGGCTCTTTATCACAATGCTACAATGGT GGATCTTTCACAAGCTCTCTCATTCTTGCTTTAATTTTGAGTGCATTTGTTATGTAA
CDS sequence (LotjaGi2g1v0066700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTATCGGTGTCAACATTGGTACAGATGTCACTAACATGCCATGTCCAACTGAGGTTGTGGCCCTTCTTAAGGTC CAAAATCCTCGGCATTGGCCAGTCCAACACCACGGCCGCCAATTGGGTTGCTCGTAACGTTGTAGCTCATGTCCCAGCCA CTAACATCACTGCCATAGCGGTCGGATCTGAAGTCTTAACAACACTGCCAAATGCAGCCCCTGTCCTTGTCTCCGCTCTG AAATTCATCCAATCCGCTCTTGTTGCAGCTAATCTGGACGACCAAATCAAGGTCTCCACCCCACACTCTTCTTCTGTCAT CCTCGACTCCTTCCCGCCTTCTCAGGCGTTTTTCAACCGCACTTGGAACCCCGTCATGGTTCCCTTGCTTCAATTTCTGC AGTCAACAGGTTCATATCTTATGCTCAATGTGTACCCTTATTATGATTACAGGCTATCAAATGATGTGATTCCTCTGGAT TACGCTCTGTTCCGTCCCCTGCCTTCGAATAAGGAAGCTGTTGATACCAACACTCTCCTGCATTATACTAATGTCTTTGA TGCAGTTGTTGATGCTGCTTATTTTGCAATGTCATATTTAAATTTCACCAATATCCCTATTCTAGTCACTGAGTCAGGAT GGCCCTCCAAAGGTGACTCGTCCGAGCCAGACACAACTCCTGATAATGCGAACACTTACAATAGTAACTTGATCAGGCAT GTCCTTAACAACACGGGGACTCCAAAGAAACCGGGAGTTTCTGTTAGCACGTATATTTATGAGCTTTATAACGAAGACTT AAGATCTGGTCCGGTCTCTGAGAACAACTGGGGGTTATTTTATGCTAATGGAGCACCAGTATATACCTTGCACTTGAGTG GTGCTGGTACTATATTTGCAAACGACACGACGAACCAAACCTTTTGCGTTGCCAAGAATAATGCCGATACTAAGATGCTT CAGGCTGCGCTTGATTGGGCTTGTGGACCTGGGAAGGTGGATTGCTCGCCTTTGCTGCAGGGTCAACCGTGTTATGAACC GGATAATGTTATTTCACATGCTACGTATGCTTTCAATGCGTATTATCAGCTGATGGATAAATCTTCTGGTACTTGTGATT TCAAAGGGGTTGCCTCTGTCACCACCACAAACCCAAGTCATGGTTCCTGTACATTTTCAGGAAGTGGTGGTAAAAATGTT ACCAGCATTAATGGCACAGAAGCAGAACTGGCCCCCTCTACCAATTCTACAAATTCAGGCTCTTTATCACAATGCTACAA TGGTGGATCTTTCACAAGCTCTCTCATTCTTGCTTTAATTTTGAGTGCATTTGTTATGTAA
Protein sequence (LotjaGi2g1v0066700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLSVSTLVQMSLTCHVQLRLWPFLRSKILGIGQSNTTAANWVARNVVAHVPATNITAIAVGSEVLTTLPNAAPVLVSAL KFIQSALVAANLDDQIKVSTPHSSSVILDSFPPSQAFFNRTWNPVMVPLLQFLQSTGSYLMLNVYPYYDYRLSNDVIPLD YALFRPLPSNKEAVDTNTLLHYTNVFDAVVDAAYFAMSYLNFTNIPILVTESGWPSKGDSSEPDTTPDNANTYNSNLIRH VLNNTGTPKKPGVSVSTYIYELYNEDLRSGPVSENNWGLFYANGAPVYTLHLSGAGTIFANDTTNQTFCVAKNNADTKML QAALDWACGPGKVDCSPLLQGQPCYEPDNVISHATYAFNAYYQLMDKSSGTCDFKGVASVTTTNPSHGSCTFSGSGGKNV TSINGTEAELAPSTNSTNSGSLSQCYNGGSFTSSLILALILSAFVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 9 | 8 | - | – | |
| Phobius | 10 | 14 | 5 | - | – | |
| Phobius | 15 | 425 | 411 | - | – | |
| Gene3D | 24 | 292 | 269 | 1.5E-95 | – | |
| PANTHER | 27 | 403 | 377 | 9.3E-230 | – | |
| PANTHER | 27 | 403 | 377 | 9.3E-230 | – | |
| SUPERFAMILY | 31 | 291 | 261 | 4.76E-68 | ||
| Pfam | 34 | 291 | 258 | 1.8E-61 | ||
| ProSitePatterns | 205 | 218 | 14 | - | ||
| SMART | 307 | 392 | 86 | 6.5E-49 | ||
| Pfam | 308 | 378 | 71 | 2.2E-19 | ||
| Phobius | 426 | 445 | 20 | - | – | |
| Phobius | 446 | 446 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0066700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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