Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0081100 |
| Transcript ID | LotjaGi2g1v0081100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G13880.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protein At3g13880; TrEMBL-Plants: tr|A0A1J7FQ36|A0A1J7FQ36_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:21977812..21980791) extracted from Lotus japonicus Gifu genome v1.2.
CAAATATGCTACTAAACACTAGAATGTAGATTTCGGCCCAAACATTTTCGGAAATCCTTTTCTAATCCGTGAAACAAACG CCCCCTAAACAAAGTATATTTTGCCCCAACAACTTAAAAATCTTCAACTGATAACTGGTATGAAGCAAGGTTTTGCGACA TAACGAACCCAAAACCCAGGATAGATTGTGACTGTCACTGAAAGTGCAAAACGCACCAAGTTTCATCTTTCCGGCAGCCG TCAATGGTGCTGAATTTGATCAGGTCACAACCCAACCCATTCATCCCTTCCAAGTTCCCTTTCCTCTTGACCTTACCTTT CTCGAACCCAGTTCACTCACCCATCCGTACCCGCACCCTCCACCTGTTCGACGAAACGCCCCAACGGAGCATCATTTCAT GCAATTCCCCCGCCTCCCTGCTCGCGTTTCGTGAGGCCAGAATCGCCGGCCTTCCTGTCAGCGACTTCACTTTCGCAGGG GTTTTAGCCTATTGCGGTTCCACCAGAAACCTGCGTTTAGGGGAAGCCATTCATGGTTCGGTTCTCGTGACCGGAATGGA TGGAATGATTTTTGTCATGAACTCCCTCATCAACATGTACTCGAAATGCAAACGAATCGAGGCGGCGAGGGTTTTGTTTG ATACTTGTGATGAACTGGATGACGTTTCGTGGAATTCAATAATTGCTGGTTATGTTAGGTTAGGTGATGGTTTTAGGGAG GTTTTTGAACTTCTGGCGAGAATGCATCGATCTGGTTTGGATTTTAGTGATTATACTTTGGGTAGTGCGCTCAAGGCGTG TTGTGTTGATAAGAGTTTGAACTGTATTGGGAAAATGCTTCATGTATGCGCTATTAAACTTGATTTGAATTCAAATATGG TGGTTGGAACTGCATTGCTTGATATGTATGCCAAGACAGGATGTTTAACTGATGCGGTTCTCGTTTTTGAAAGCTTCCGC TATCACAATGATTTTATGTATAATACCATGATTGCTGGATTCCTGCAAAGGCAGACAGTTTCTTGTGGATATGCCAGGGA GGCACTTGGTCTTTTTTGTGAGATGCAGATGCTGGGATTAAACTGCTCGAAGTTTACGTTCTCTAGCATAGTTAAGGCTT GTGTTGCTATTGGAGATTTTAGAGCTGGAAGACAGATTCATGCTCAAATTTGTAAGAAGAATCTTCAGTGTGACGAGTTT GTCGGATGTTCCTTGGTAGACTTCTACTCCTTTTTCGGTTCAATTGATGATGGGATCAGGTGCTTTAACTCAACTCCTAA ATTGGATGTTGTCTCCTGGACTTCCATGATTGCAGGTTGTGTTGAAAATGGAAAGTTTGAAACTGCCTTGTCTTTGTTGC GTCAATTCATGGCTTCTGGAAGGAAACCGGATGAGTTCATAATGTCAAGTGTGATGGGTGTCTGTGCTGATATGGCTGCA GCAAGGTCTGGAGAGCAGATCCAGGGCTGGGCATTGAAATTTGGTATTTCCAATTTTATCATTGTTCAAAACTCACAGAT TTGCATGTATGCAAAGTCTGGAGACATAGATTCAGCTCGGCTGACCTTTCAAGAGATTGAGAACCCTGATGTGGTATCCT GGTCAGAGATGATTTGTTGCAATGCACATCATGGTTTTGCTAACGAGGCTCTAAGAATTTTTGAGTTGATGACTGTTTCT GGGATTAAACCCAACCATATCACATTACTTGGGGTCCTAACTGCTTGTAGCCATGGAGGTCTTGTTGACGAAGGGTTAAG ATACTTTGAAATCATGAAGAAAGATTATGGCATAACAGCTAATGTAAAGCACAGTACTTGCATTGTTGATCTCTTAGGGC GTGCAGGAAGGCTAGAGGATGCCAAGAGATTTATTCTCGATTCAGGTTTTGCGGATGATCCTGTGATGTGGCGTGCCTTG CTAGGTGCTTGCAGAGTTCATAAGGACACCATGATGGGAAAACACATAGCTGACAGAGTAATAGAGCTTGAACCTCATGC AGCTGCATCTTATGTGCTTCTTTACAACATCTATAATGATGCGGGGAAAGAAAAGCGTGCTTTAGAGGTTCGGAAGCTCA TGCAAGATCAAGGAGTTAAAAAGGAACCTGGTATAAGTTGGATTGAGGTTGGAAGTAAGGTTCATATGTTTTTGGTGGAT GATCGTTCTCATCCAATGAGTCAATTAATTTATTCACGTTTGGAAGAAATGTTGGTGAAGATAAATAAAATTGAATTCGG CGATGAGAAGCTTCCTATGGACATCTCTGGAACCGAACTCAATGGTATCGTAGGCATGAGCCATCATAGTGAAAAGTTAG CTGTAACTTTTGGAATCATCTCTTTACCAAAATCAGCACCAGTGAGGGTGATAAAGAATTTGAGAGTTTGCTCTGATTGC CATGTGACAATGAAACTCATCTCCAAGTTGGAGAAGAGAAAAATCATTCTTCGAGATGCTATTCGTTTCCATCATTTTAA AGAAGGTTTATGTTCTTGTAAAGATTACTGGTAGCAATAGATCAGTTCCTTGGATAGCATATCTTGACACTTAATCCCCC TTGGCATCATATGAGGGGTTGGAGAGACTGTTTCTGGACGTATTACCAAGCTCCTACACCAACAGTCTTGTGTCCTTCAT GTCAACAAAAGGAGTAACTAAAAGTTACAGAGTGAGATTATGCAAGAAGTGGCTATTGCCATTGGTGTATGATTGCCACA GTGCAAGGACATGAAAAAGAATCTCTGGTAGACGGTTTATTCATTTGGTGGATTAAGCATATACATTGTATCCTGAGGGT AAAAGACAACACTGTTATATAGCAGAAATAGGTAGTTAGGATTCCATTATATATTTTAAATATGTTTACTTTTGTTTCAG TCATTTTGTAAAAAGTATATTTTGTAACTAAAAGTAGTTAAAATTCTTAATGATGAAAATTGCTAGAAGAAAATATTTCT CAACAATTTGCAGAAAATCC
CDS sequence (LotjaGi2g1v0081100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTGAATTTGATCAGGTCACAACCCAACCCATTCATCCCTTCCAAGTTCCCTTTCCTCTTGACCTTACCTTTCTC GAACCCAGTTCACTCACCCATCCGTACCCGCACCCTCCACCTGTTCGACGAAACGCCCCAACGGAGCATCATTTCATGCA ATTCCCCCGCCTCCCTGCTCGCGTTTCGTGAGGCCAGAATCGCCGGCCTTCCTGTCAGCGACTTCACTTTCGCAGGGGTT TTAGCCTATTGCGGTTCCACCAGAAACCTGCGTTTAGGGGAAGCCATTCATGGTTCGGTTCTCGTGACCGGAATGGATGG AATGATTTTTGTCATGAACTCCCTCATCAACATGTACTCGAAATGCAAACGAATCGAGGCGGCGAGGGTTTTGTTTGATA CTTGTGATGAACTGGATGACGTTTCGTGGAATTCAATAATTGCTGGTTATGTTAGGTTAGGTGATGGTTTTAGGGAGGTT TTTGAACTTCTGGCGAGAATGCATCGATCTGGTTTGGATTTTAGTGATTATACTTTGGGTAGTGCGCTCAAGGCGTGTTG TGTTGATAAGAGTTTGAACTGTATTGGGAAAATGCTTCATGTATGCGCTATTAAACTTGATTTGAATTCAAATATGGTGG TTGGAACTGCATTGCTTGATATGTATGCCAAGACAGGATGTTTAACTGATGCGGTTCTCGTTTTTGAAAGCTTCCGCTAT CACAATGATTTTATGTATAATACCATGATTGCTGGATTCCTGCAAAGGCAGACAGTTTCTTGTGGATATGCCAGGGAGGC ACTTGGTCTTTTTTGTGAGATGCAGATGCTGGGATTAAACTGCTCGAAGTTTACGTTCTCTAGCATAGTTAAGGCTTGTG TTGCTATTGGAGATTTTAGAGCTGGAAGACAGATTCATGCTCAAATTTGTAAGAAGAATCTTCAGTGTGACGAGTTTGTC GGATGTTCCTTGGTAGACTTCTACTCCTTTTTCGGTTCAATTGATGATGGGATCAGGTGCTTTAACTCAACTCCTAAATT GGATGTTGTCTCCTGGACTTCCATGATTGCAGGTTGTGTTGAAAATGGAAAGTTTGAAACTGCCTTGTCTTTGTTGCGTC AATTCATGGCTTCTGGAAGGAAACCGGATGAGTTCATAATGTCAAGTGTGATGGGTGTCTGTGCTGATATGGCTGCAGCA AGGTCTGGAGAGCAGATCCAGGGCTGGGCATTGAAATTTGGTATTTCCAATTTTATCATTGTTCAAAACTCACAGATTTG CATGTATGCAAAGTCTGGAGACATAGATTCAGCTCGGCTGACCTTTCAAGAGATTGAGAACCCTGATGTGGTATCCTGGT CAGAGATGATTTGTTGCAATGCACATCATGGTTTTGCTAACGAGGCTCTAAGAATTTTTGAGTTGATGACTGTTTCTGGG ATTAAACCCAACCATATCACATTACTTGGGGTCCTAACTGCTTGTAGCCATGGAGGTCTTGTTGACGAAGGGTTAAGATA CTTTGAAATCATGAAGAAAGATTATGGCATAACAGCTAATGTAAAGCACAGTACTTGCATTGTTGATCTCTTAGGGCGTG CAGGAAGGCTAGAGGATGCCAAGAGATTTATTCTCGATTCAGGTTTTGCGGATGATCCTGTGATGTGGCGTGCCTTGCTA GGTGCTTGCAGAGTTCATAAGGACACCATGATGGGAAAACACATAGCTGACAGAGTAATAGAGCTTGAACCTCATGCAGC TGCATCTTATGTGCTTCTTTACAACATCTATAATGATGCGGGGAAAGAAAAGCGTGCTTTAGAGGTTCGGAAGCTCATGC AAGATCAAGGAGTTAAAAAGGAACCTGGTATAAGTTGGATTGAGGTTGGAAGTAAGGTTCATATGTTTTTGGTGGATGAT CGTTCTCATCCAATGAGTCAATTAATTTATTCACGTTTGGAAGAAATGTTGGTGAAGATAAATAAAATTGAATTCGGCGA TGAGAAGCTTCCTATGGACATCTCTGGAACCGAACTCAATGGTATCGTAGGCATGAGCCATCATAGTGAAAAGTTAGCTG TAACTTTTGGAATCATCTCTTTACCAAAATCAGCACCAGTGAGGGTGATAAAGAATTTGAGAGTTTGCTCTGATTGCCAT GTGACAATGAAACTCATCTCCAAGTTGGAGAAGAGAAAAATCATTCTTCGAGATGCTATTCGTTTCCATCATTTTAAAGA AGGTTTATGTTCTTGTAAAGATTACTGGTAG
Protein sequence (LotjaGi2g1v0081100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLNLIRSQPNPFIPSKFPFLLTLPFSNPVHSPIRTRTLHLFDETPQRSIISCNSPASLLAFREARIAGLPVSDFTFAGV LAYCGSTRNLRLGEAIHGSVLVTGMDGMIFVMNSLINMYSKCKRIEAARVLFDTCDELDDVSWNSIIAGYVRLGDGFREV FELLARMHRSGLDFSDYTLGSALKACCVDKSLNCIGKMLHVCAIKLDLNSNMVVGTALLDMYAKTGCLTDAVLVFESFRY HNDFMYNTMIAGFLQRQTVSCGYAREALGLFCEMQMLGLNCSKFTFSSIVKACVAIGDFRAGRQIHAQICKKNLQCDEFV GCSLVDFYSFFGSIDDGIRCFNSTPKLDVVSWTSMIAGCVENGKFETALSLLRQFMASGRKPDEFIMSSVMGVCADMAAA RSGEQIQGWALKFGISNFIIVQNSQICMYAKSGDIDSARLTFQEIENPDVVSWSEMICCNAHHGFANEALRIFELMTVSG IKPNHITLLGVLTACSHGGLVDEGLRYFEIMKKDYGITANVKHSTCIVDLLGRAGRLEDAKRFILDSGFADDPVMWRALL GACRVHKDTMMGKHIADRVIELEPHAAASYVLLYNIYNDAGKEKRALEVRKLMQDQGVKKEPGISWIEVGSKVHMFLVDD RSHPMSQLIYSRLEEMLVKINKIEFGDEKLPMDISGTELNGIVGMSHHSEKLAVTFGIISLPKSAPVRVIKNLRVCSDCH VTMKLISKLEKRKIILRDAIRFHHFKEGLCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 198 | 158 | 1.6E-101 | – | |
| Gene3D | 52 | 200 | 149 | 8.5E-21 | ||
| ProSiteProfiles | 108 | 138 | 31 | 6.303 | ||
| Pfam | 111 | 133 | 23 | 0.087 | ||
| Pfam | 139 | 187 | 49 | 2.0E-7 | ||
| ProSiteProfiles | 139 | 174 | 36 | 10.83 | ||
| TIGRFAM | 141 | 172 | 32 | 2.8E-4 | ||
| PANTHER | 176 | 309 | 134 | 1.6E-101 | – | |
| Gene3D | 201 | 298 | 98 | 4.7E-13 | ||
| ProSiteProfiles | 211 | 241 | 31 | 5.93 | ||
| ProSiteProfiles | 242 | 281 | 40 | 6.928 | ||
| Pfam | 242 | 293 | 52 | 6.7E-8 | ||
| ProSiteProfiles | 282 | 316 | 35 | 7.563 | ||
| Gene3D | 299 | 412 | 114 | 3.2E-16 | ||
| PANTHER | 301 | 403 | 103 | 1.6E-101 | – | |
| ProSiteProfiles | 348 | 382 | 35 | 11.63 | ||
| Pfam | 350 | 378 | 29 | 3.7E-5 | ||
| TIGRFAM | 350 | 384 | 35 | 2.7E-7 | ||
| PANTHER | 387 | 613 | 227 | 1.6E-101 | – | |
| ProSiteProfiles | 418 | 448 | 31 | 5.229 | ||
| Gene3D | 420 | 636 | 217 | 2.2E-31 | ||
| ProSiteProfiles | 449 | 483 | 35 | 10.457 | ||
| Pfam | 451 | 481 | 31 | 0.0039 | ||
| TIGRFAM | 451 | 484 | 34 | 0.0016 | ||
| ProSiteProfiles | 484 | 514 | 31 | 6.862 | ||
| Pfam | 491 | 514 | 24 | 0.56 | ||
| ProSiteProfiles | 586 | 620 | 35 | 7.322 | ||
| Pfam | 622 | 746 | 125 | 1.1E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0081100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…