Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0081400 |
| Transcript ID | LotjaGi2g1v0081400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystinosin-like protein; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|A0A072U6W8|A0A072U6W8_MEDTR Cystinosin-like protein; Found in the gene: LotjaGi2g1v0081400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22174631..22176956) extracted from Lotus japonicus Gifu genome v1.2.
GTTGAACAGAACCAAAAAGAAATGAGACCGAAAAAATAATAAAATAAGGTATGGTCAAGTGCTGAATAAAGCAATGGCGC GGAATGTGAGGATGCAAAAAAAAAAAAAAAAAACGGCGGCTGCTGTTGAGGAATTTCTGTCGGCTGGAGTGATGTGAAAA CAAACCAGCGTGGATCCCGATGACTGACGGCTGGCGGCTGTCTTTGGGAAACAAGCCGCACAAAGCACGAGGCTGAGCAA CGTGCAGAGGGACAGAAAGACTGTCTGGCGGTGCGGAAGGAGAGGCGGGTCCCGCGTGGCTGGCGGCAAGGACACGTGGA GGCGGCTCACGCGAAGCAAGGTTGCTAACGGCGTGAAGAACGAGGCTGTCTGGCGGCGCCAACAAAGAACAGACAGCGGC AGCGCGTGGCAGGCTAAAGGACACGCGCGGACAACAAGGAGCACACGCGCAAAGGAAGAAGCTTGGCGGCGCGGGGCTCG AGGCAGCACAGGGACACGTGCAAGTGACGTCAGCGGCTGGAAAGAGAAAAGAAAAGCTGTTGCACGGAAAGCAAGGCAGC TAGAATAGGAAAAAGAGAGAAGGTGGCAACATAGGGTTGGAGGCTAGGGTTTCAACCTAAACCTGATAACATGTAAGATT GAATACTCTCACCACAAATTGTGTGTGAGGTAGACAATATTATTTATAAAAAAAAAAGGGACAGAATATGCTAAGAATAT TCTGAGGCATATTACAAAATAAATCAATGATTAAAGAAAGGAATATTTGGCTACATCCTTATTTGAAATGTTTCTTTGCC CTGCGTGACGGGTTGTGCTAGCTCTAAGTTCTAAGTGATGTATCATCAAATGAAATTGAAAAACAAGATTTGGTTGTATT CCATTTCTAACTTATGAAATTATATATTTTGTGTAGCACAATGCAGGTGATTATTGCAGCTCTCAAATATATTCCACAGG TCAGAATTTTACATGACTCGTAAACTTTATATTTTTGAATAGTGGATATGCTAGTAGTTATTGGTACTTTGTCATTATTG AGAAGAGTGTTTGACATCTGGTTTTACTACCACAGGTAATTATGAACTTCATGAGGAAGAGCACAGATGGATTTAGCATT GGAAATGTGTTGCTGGATTTCGGTGGAGGCATGGCAAACTATGCCCAGATGGCTACACAGTCAATCGATCAAAGTTTGTC ATCGTTTCCAAATTCACTATAGTTAGTATTTAGTAACATTCCAATTGGCTTCTTAGTAACAGTTTCTTCTGTGTTTCTTT CTAGATTCTTGGGTGAATTTCTCTGGGAACATTGGCAAAGTATTGCTATCCCTGGTATGCATCAATTAATCCCATTTTTT ATCCGGTTACCTCTTCACTTGAATACCGAAAAATTGATTATTTTGGTACAAGTTAAGATGCGTAGACATATATGTCTTAG AAATTCTAGCTAGTTAATTTCCTTAGTTCCCAAATTGTGTCATTCATATGCAGACATGGAGATGTCAATCCTTAATAAGA GTAGTGCTCATGGCTGCATTAGGTTCACCAATTGCCTTAGGAAGTCGAATTCCCTAGCAGACTAATCAGCTCATGTTGGG CATAGCTTTCCTTTTGGTGTCCATTTTTTTAGGTCGGCTATGAAAGATTGTCTTAGGCTGGTTAACCAGGATTTAATGAA GGTTGCGTCCTCTGTTCCTATTTCAGCTCCTGATTAGTTGTAATTTTGTCGGGGCCTAGCGCCTCCAGTTAACAAATTAA ACATTAAAAATTTATGGTTCATTTTCTTGTCCCACCAATATAATCTTAGCAGGTTAATTAGAGAAAATATGAGTGGGGGT ATTACATACTATTATGGTCATTTGACATGCCAACATTTTATTGGTGGGAGAAAAATGAGATGCAAGATTTTAATTCATTT TAAGCATGTCAATTGGTTTCATCTCCTATATGAATCATTTAGGAAACTTGAAAATATGGTAAAAATTTAATAAAATTATT AATGACATCCAAAAGACATTTGTTGACTTGAAATAGTTACTCATGTATGTACACATATTTCAGGTGTGTATGTTCTTTGA TCTTCTATTCATGTGTCAACATTATGTGCTGTATCCATCAAACAAGGCAGCATCAGCATCAGTCACAGAACCCCTAATCA AGTCTCCTAATCAACCAGTAGCTGCAAGTGTGCCAGTGGCTGAAAATGTTTGATGTATGATTTTAGTTTAGTTTGTACAG GAAAAAACCCAAAGAGCTAGCAAATGTTAAACAGACCCACTTTTTACCGGTCTTCAATTAGAAAAAGTGAGGGGATTGAT TACTTT
CDS sequence (LotjaGi2g1v0081400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTATATATTTTGTGTAGCACAATGCAGGTGATTATTGCAGCTCTCAAATATATTCCACAGGTAATTATGAACTT CATGAGGAAGAGCACAGATGGATTTAGCATTGGAAATGTGTTGCTGGATTTCGGTGGAGGCATGGCAAACTATGCCCAGA TGGCTACACAGTCAATCGATCAAAATTCTTGGGTGAATTTCTCTGGGAACATTGGCAAAGTATTGCTATCCCTGGTGTGT ATGTTCTTTGATCTTCTATTCATGTGTCAACATTATGTGCTGTATCCATCAAACAAGGCAGCATCAGCATCAGTCACAGA ACCCCTAATCAAGTCTCCTAATCAACCAGTAGCTGCAAGTGTGCCAGTGGCTGAAAATGTTTGA
Protein sequence (LotjaGi2g1v0081400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLYILCSTMQVIIAALKYIPQVIMNFMRKSTDGFSIGNVLLDFGGGMANYAQMATQSIDQNSWVNFSGNIGKVLLSLVC MFFDLLFMCQHYVLYPSNKAASASVTEPLIKSPNQPVAASVPVAENV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 6 | 106 | 101 | 4.9E-53 | – | |
| Pfam | 6 | 60 | 55 | 1.4E-15 | ||
| PANTHER | 6 | 106 | 101 | 4.9E-53 | ||
| Phobius | 15 | 18 | 4 | - | – | |
| SMART | 17 | 48 | 32 | 1.4E-8 | ||
| Phobius | 19 | 73 | 55 | - | – | |
| Phobius | 74 | 94 | 21 | - | – | |
| Phobius | 95 | 127 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0081400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…