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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0082500 |
| Transcript ID | LotjaGi2g1v0082500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb factor; TAIR: AT5G14340.1 myb domain protein 40; Swiss-Prot: sp|P81394|MYB15_ANTMA Myb-related protein 315; TrEMBL-Plants: tr|I1N6Y9|I1N6Y9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0082500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22814689..22816661) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATCCCGCCTCAAAGGACATCTTGCTTATATTAAAATGTCTGAATGAACTGGAAGAGCATCTTTGTTTGAACCTTAA GCTCTCTTTTTATAAGTTCCCTCTTTATATTATGTTATGTCCTAGTTAGTTAACTCTCAAGACAAACCTCCCTAAATGGG AAGACAGCCTTGTTGTGATAAGGTTGGTTTGAGGAGAGGTCCATGGACAATTGAAGAAGATCACAAGCTTATGAATTTCA TCCTCAACAATGGCATCCAATGCTGGAGAACAGTTCCCAAGCTTGCAGGTACTTTCTGAAAATTTTGCTCCGTTAGTTTT GATGCATAAACAACCAATAGTACCATCACTTTATTTTTCTATCTATGTCTCACTTCTCATTACATCAAATCATATATCAC ATCCGTTCCTTCTCTCTACGGTGTCTAAACTCTAAACACCTTAGTGGTCTGCCAAACATTTTTCAATTTTGTTGACTTAT CATTCTTCTGTTGATGACTATGCCTTAAGGGGTGTCTGACTAGGTGCCTTATATTTTTTCATGTTGGTGAAGGTTTGCTA AGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTAAGGCCAGACCTCAAGAGAGGCGACTTTACAAAAATGGA AGAGGATCAAATTATACAACTGCATTCATGTCTTGGTAATAGGTACAATAAACGTTCTTTAATTATCATGGCATAAAAAT AGACATGATTTTGGAAATGCATGTGAAGAATGTTGCGATAAAGTGAGTACTTATCCAAGTTCCACGTCGAGTGGTGGGAA GAAGAAAGAAGTAGAGAGCTATGATAAATATGGAGGGTTAGTTTTAGTTTTCTTCACCACAACAACTCTAGTCCTTTAGG TGTATTGGAGTTTGGGTAGTTGTGTCTTTCAGAGGATTTGCAATTTTCTCTTTGTAAAAATTGTAATAAAATATTTTGTT GGGATGTGGATGTAGGCAATGCGTGCCGAACCATGTTAAATTTGTGAATTGTTTTTTGCTTTTTTGTTTTTATTGGTGTG CTTCCGCAAATGTCACGATTTCCTCATCTGGATCACAACAAACTAATAAGACTGAAAGATCCCAGATGTATTGTAGTTCT AAAGGATATCAGTGGATACCAATTTTCTTTAACATAGTAAAATGATGCAATTACAGGTGGTCTAAGATTGCTGCACATTT TCCAGGGAGGACAGACAATGAAATCAAAAACCATTGGAACACAAGAATAAGGAAGAGGTTGAAGCTCCTTGGTGTGGACT CTATGACCCTGAATCCAGTTCAGCAAAAGGGCAAGTCTGATGATAATGATGATAAAAATAAGACAAGCCAACAGTCAATT ACTTCACAAAGGTATGAAGAAGGTGTGGAGAGTAAGTCCATGGATATTCATGGCACTGAAAAAATGCCAAAATCAGAAGG GAGACTAGAAAAAAAAAATATGGATTGGAATGATGGAACCAGTGGATTCTTAAACAATTATGAGATGCAATGTTCATCAC AGTGGGACTTGGGATCATGGACGAATCAAGAAAACAAAACAAGTAGTAGTTCTTATCGTAGTTCTTCTTTCTCTCTGGAT GATGCTAGCAACCTTTCTGTGGGTATTAAGGATTTGTTTCAACAGCAATGGGTTGATGGTTTGGATTCGATTCTCTCGTG GGATAGCTTCAGCACTCTAGAAAGAGAGTCTATTTTGGAAAATTATAGGCAATAAGCATAAGCACCTCTTAAAACTACTT GACAATCTCTCATGCAATAAGATGTTATAAAAGATCATGTAAAGGAGATTGCCACTTTCATCTCTGCAACTACTTGACAT TAAATATTATGTTGATAATTAATGAATGTGCGGTAGTAATGATATTTTATTATTGATTGATATTAATTTGAATAAGTTTG TAAAATTTAAGTGACTTGAGATCAGAAGTTGTGTCAATAAAGCTGCGTTAAAT
CDS sequence (LotjaGi2g1v0082500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAGGAGAGGTCCATGGACAATTGAAGAAGATCACAAGCTTATGAA TTTCATCCTCAACAATGGCATCCAATGCTGGAGAACAGTTCCCAAGCTTGCAGGTTTGCTAAGATGTGGAAAGAGCTGCA GATTGAGATGGATTAATTATCTAAGGCCAGACCTCAAGAGAGGCGACTTTACAAAAATGGAAGAGGATCAAATTATACAA CTGCATTCATGTCTTGGTAATAGGTGGTCTAAGATTGCTGCACATTTTCCAGGGAGGACAGACAATGAAATCAAAAACCA TTGGAACACAAGAATAAGGAAGAGGTTGAAGCTCCTTGGTGTGGACTCTATGACCCTGAATCCAGTTCAGCAAAAGGGCA AGTCTGATGATAATGATGATAAAAATAAGACAAGCCAACAGTCAATTACTTCACAAAGGTATGAAGAAGGTGTGGAGAGT AAGTCCATGGATATTCATGGCACTGAAAAAATGCCAAAATCAGAAGGGAGACTAGAAAAAAAAAATATGGATTGGAATGA TGGAACCAGTGGATTCTTAAACAATTATGAGATGCAATGTTCATCACAGTGGGACTTGGGATCATGGACGAATCAAGAAA ACAAAACAAGTAGTAGTTCTTATCGTAGTTCTTCTTTCTCTCTGGATGATGCTAGCAACCTTTCTGTGGGTATTAAGGAT TTGTTTCAACAGCAATGGGTTGATGGTTTGGATTCGATTCTCTCGTGGGATAGCTTCAGCACTCTAGAAAGAGAGTCTAT TTTGGAAAATTATAGGCAATAA
Protein sequence (LotjaGi2g1v0082500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRQPCCDKVGLRRGPWTIEEDHKLMNFILNNGIQCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGDFTKMEEDQIIQ LHSCLGNRWSKIAAHFPGRTDNEIKNHWNTRIRKRLKLLGVDSMTLNPVQQKGKSDDNDDKNKTSQQSITSQRYEEGVES KSMDIHGTEKMPKSEGRLEKKNMDWNDGTSGFLNNYEMQCSSQWDLGSWTNQENKTSSSSYRSSSFSLDDASNLSVGIKD LFQQQWVDGLDSILSWDSFSTLERESILENYRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 265 | 263 | 1.8E-90 | – | |
| PANTHER | 3 | 265 | 263 | 1.8E-90 | ||
| ProSiteProfiles | 9 | 61 | 53 | 14.333 | ||
| SUPERFAMILY | 11 | 108 | 98 | 5.24E-28 | ||
| Gene3D | 12 | 67 | 56 | 6.2E-16 | – | |
| SMART | 13 | 63 | 51 | 1.1E-5 | ||
| Pfam | 14 | 61 | 48 | 1.1E-11 | ||
| CDD | 16 | 61 | 46 | 2.80656E-4 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.922 | ||
| SMART | 66 | 114 | 49 | 5.1E-15 | ||
| Pfam | 67 | 110 | 44 | 4.9E-14 | ||
| Gene3D | 68 | 153 | 86 | 4.8E-19 | – | |
| CDD | 70 | 110 | 41 | 3.85185E-10 | ||
| MobiDBLite | 128 | 183 | 56 | - | – | |
| MobiDBLite | 157 | 183 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0082500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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