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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0084500 |
| Transcript ID | LotjaGi2g1v0084500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c1, heme protein, mitochondrial; TAIR: AT5G40810.1 Cytochrome C1 family; Swiss-Prot: sp|P25076|CY11_SOLTU Cytochrome c1-1, heme protein, mitochondrial; TrEMBL-Plants: tr|A0A1J7GJ50|A0A1J7GJ50_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:24019696..24022781) extracted from Lotus japonicus Gifu genome v1.2.
GGTAATTTCAGATGGATTTGTCCTTCTCTATACTGAGGAGTGAGGACTTAAATCCATATCCAATCAAGGGAACCATCTTT TATTATGGACTTATATTTATTGTTTGTCATATAGGAGAAGCCATTCTGCAGACTTTTATTGTGGAAATACGTAATTGTTT ATAACAACTTTCCTCCCATAGAACTACCTGATCTTGTCATTTTCTATTAACAGTTATAACATTTCTTTTTGCAGAATCCT TCTATGTCATCTGGTTCTGGCTCTGCTGGCAGCAGCTCCTTAAGAGCTCTTGCGCTAATTGGAGCTGGCATCTCAGGTTT TTTGGGTTTTGCAACAACTGCATCAGCTGATGAAGCAGAGCATGGCCTGTCATGTCCAAGCTATCCATGGCCTCACGAGG GCATCCTCAGTTCATATGATCATGCTTCGTATGTTGACTTAAATATTCTAGTAGTTGTTAAGTATAAGTACCTGTTCATT TTAATTTATTTTTGTCGTATTGTTGTTCTTATTTTTATTTTTTCCCAGCCTTGGATCAGCCATTCAAATCTTCTTCTCTT GCCTTTTCATTTTCCTAGGTGATATGTGATCTAACATGGTTTGAACCTTGTCTGTGTTATATGCTTATGAGTAATAATTA CCATCTGCTGTTACTCATCAAAAAACTATTACCATCTATTGTTTTATCGAATATCACACATTGTCTTATAAAATAGTAGT AAGTGAATTCCTGAAATAATAACTTGGATTTCTGGATTCTGCAATAGAAGTATTTCCCTGTATCCATAATATAATGAATC TTTATTCTTCTCTATGCCAACATCATATATTCAAACCAAATTTTACATTTATGTTATATGAACATTATTGCTAATTTAGA TCTTTATACATTTAACTAATTTTCTGTGAGCAGGATACGTCGTGGTCATCAAGTTTATCAACAAGTCTGTGCTTCCTGTC ATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCATATACAGAAGAAGAGGTCAAGGCTATGGCAGCTGAG ATTGAGGTGGTTGATGGGCCTAATGATGAGGGGGAGATGTTTTCACGCCCCGGTAAACTCAGTGATCGCTTTCCGGAGCC TTATGCAAATGAATCAGCTGCTAGGTTTGCCAATGGAGGAGCCTACCCTCCAGATCTAAGTCTTATTACCAAAGTAATGT CAGTTGTCTATTAGTAACTTTTTTGGGTCTTCAATTGCATCTACAGCTGAAATATCCTTACCATTTGTATTTTCAGGCTC GTCACAATGGTCAGAACTATGTATTCTCCCTTCTAACCGGCTATCGTGAACCCCCTGCTGGTATCGTGGTATATTATCCT TGGAACGCTTTTCTTAACTCTAAATTCTACTTATTAGAGTAACTTAGTGCATTATGTAGACATTGTCATATGGAAATCGC TAAACCACCCATCAGGTTTAGAACCTTAAACACTATATCCTACTTATTGAAGTAACTTAGTGCATTCTGAACAAGTTGTT GTATGGAAATTGCTAGATCATCTATCAGGCTCAAAATCAAAACAAAATGTATTGTGAAATCTGTTGGCTGCGATTGAAAT CTTTGCTAGCACAGTCAACAATGGTAAAATAATGTTTACTTTTTGAATATTATATCCGTTTTGATTACACACCAATGAGT GAAATATGCACATGGTGAGTAGGGGATAGAGAGCCTTTGACATCATACATTGTTTTTCTTCGAATATAAATTTCTTACAT AATTTGGGTTTGTCATTTCTAGGTGAAGTAGGTGAGCATAATACTAATCTTTCTATGAACTTGTGTGTTATTCTAGTTGG CAGTCATCTTTGTTTATGGATATTAATGACATGTGATGACCTTTCATTATTTTTTTTGAAATTGTTAGGATTTTAAATAT CTAGTTTAGGTTTATTTTAGGAGGTTATATATAATTTTAGGAATTGATCTTTGATTTTCATTTGGTTATCTTTTAGATTA ATAGTAGAGTATCTTTTATTTTAGAAGTATATCTTTTATTTTTTAGGGGCCAAGTCTATCTCTATTAGGATTAGTTAATT ATAAATAAGAGGTCTCTCATTAGATTAGGTTAGCATTTGATTATTGAGTTGTAAAAGGTATTTTACCGTTGTAAGGGATT TGCCCTTTTTGAACATTTGATTATTTTGCATATTTACCTTTACCCCCTTTAATTGGTGTTTGGCTGTTTGAGGAAAACCA ACCCTAACAGAGGGCGATAAATAGCCTTTTGGCACCATGTGTTATTTTCTTCACATATAAATTTCTTACATAATTTGGGT TCGTCATTTCTAGGTGAAGCAGGAGAGCACACTAGACTAATCTTTCTATGAACTTTGTATGTGATTCTAGTTGGCAGTCA TCTTTGTTTATGGATATTACAGACAAGTGATGAACTTACATGATTCTTTTGAAACATTCTAATTCTTGTTGAGTCTAAAT ATTTAATAGTTAATACTAGTTCATAGTTATTCTGTCCCTGTACCAGTTTGGCAATGCTGTACTCTAAGTCAAATTTTGTT TATGGTTGTGTTTGAAATAATAATGTAGATCAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGTGGGGCCATTGCCA TGCCTAAGATGCTTAATGATGGCGCTGTTGAATATGAAGATGGAACCCCTGCTACAGAATCTCAGGTACCTTATGTTTGT TGTGAATTGTTTACAGTAAACCTTACCGCAGTTCGATTAACTATGAACATAGGATGAATGAAGCAATTTTTTTTTCTTCT TGTTATGTTTTGTTGCAGATGGGGAAAGATGTTGTGTCATTTTTGTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAA ACTGGTTTGTTTCCTTTAATATCCTTTTTCCACCACAGATAAAATGAAGAAAGTATCTTATTTTCTGAGCACATTGCTTC TACATGCAGATGGGATTTAAGTGGATATTTGTACTATCACTGGCATTACTTCAAGCTGCCTATTATCGTCGCCTTCGGTG GTCTGTTCTCAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAATTAG
CDS sequence (LotjaGi2g1v0084500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCTGGTTCTGGCTCTGCTGGCAGCAGCTCCTTAAGAGCTCTTGCGCTAATTGGAGCTGGCATCTCAGGTTTTTT GGGTTTTGCAACAACTGCATCAGCTGATGAAGCAGAGCATGGCCTGTCATGTCCAAGCTATCCATGGCCTCACGAGGGCA TCCTCAGTTCATATGATCATGCTTCGATACGTCGTGGTCATCAAGTTTATCAACAAGTCTGTGCTTCCTGTCATTCTATG TCTTTGATATCATACCGTGATTTGGTTGGTGTTGCATATACAGAAGAAGAGGTCAAGGCTATGGCAGCTGAGATTGAGGT GGTTGATGGGCCTAATGATGAGGGGGAGATGTTTTCACGCCCCGGTAAACTCAGTGATCGCTTTCCGGAGCCTTATGCAA ATGAATCAGCTGCTAGGTTTGCCAATGGAGGAGCCTACCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGT CAGAACTATGTATTCTCCCTTCTAACCGGCTATCGTGAACCCCCTGCTGGTATCGTGATCAGAGAAGGACTGCACTATAA TCCTTATTTTCCTGGTGGGGCCATTGCCATGCCTAAGATGCTTAATGATGGCGCTGTTGAATATGAAGATGGAACCCCTG CTACAGAATCTCAGATGGGGAAAGATGTTGTGTCATTTTTGTCATGGGCAGCTGAGCCTGAGATGGAAGAGAGAAAACTG ATGGGATTTAAGTGGATATTTGTACTATCACTGGCATTACTTCAAGCTGCCTATTATCGTCGCCTTCGGTGGTCTGTTCT CAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAATTAG
Protein sequence (LotjaGi2g1v0084500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSGSGSAGSSSLRALALIGAGISGFLGFATTASADEAEHGLSCPSYPWPHEGILSSYDHASIRRGHQVYQQVCASCHSM SLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFSRPGKLSDRFPEPYANESAARFANGGAYPPDLSLITKARHNG QNYVFSLLTGYREPPAGIVIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVSFLSWAAEPEMEERKL MGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 6 | 278 | 273 | 3.6E-188 | ||
| PANTHER | 6 | 278 | 273 | 3.6E-188 | – | |
| Phobius | 15 | 27 | 13 | - | – | |
| Phobius | 28 | 35 | 8 | - | – | |
| Phobius | 36 | 241 | 206 | - | – | |
| Gene3D | 38 | 233 | 196 | 1.8E-91 | ||
| SUPERFAMILY | 42 | 232 | 191 | 3.05E-73 | ||
| PRINTS | 47 | 66 | 20 | 1.1E-78 | ||
| Pfam | 49 | 265 | 217 | 7.0E-98 | ||
| ProSiteProfiles | 61 | 168 | 108 | 7.432 | ||
| PRINTS | 67 | 86 | 20 | 1.1E-78 | ||
| PRINTS | 112 | 132 | 21 | 1.1E-78 | ||
| PRINTS | 145 | 169 | 25 | 1.1E-78 | ||
| PRINTS | 183 | 194 | 12 | 1.1E-78 | ||
| PRINTS | 194 | 213 | 20 | 1.1E-78 | ||
| PRINTS | 214 | 233 | 20 | 1.1E-78 | ||
| PRINTS | 233 | 248 | 16 | 1.1E-78 | ||
| SUPERFAMILY | 233 | 277 | 45 | 1.83E-13 | ||
| Gene3D | 234 | 275 | 42 | 3.7E-11 | – | |
| Phobius | 242 | 259 | 18 | - | – | |
| Phobius | 260 | 278 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. |
Expression pattern of LotjaGi2g1v0084500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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