Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0088800 |
| Transcript ID | LotjaGi2g1v0088800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine protein phosphatase 2A regulatory subunit B; TAIR: AT3G21650.1 Protein phosphatase 2A regulatory B subunit family protein; Swiss-Prot: sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; TrEMBL-Plants: tr|A0A0L9UV59|A0A0L9UV59_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0088800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:25888808..25891744) extracted from Lotus japonicus Gifu genome v1.2.
AATTCCCCTTCTACCTCTACCCTTTACTCTCTGATTAAAAAAGATTAAAACTTTGGCTTCAACAACATCTTTTCTTCAAT AGGGTTTATTGGTTCAATCTCAATCTCAGTGTAAGTACTTTTCTCCTGTTTATGCTGTCAACTTCTTGGAATCATTGCTT CATACTCAGCTAATCCTTGTTTTTTGTGTGTGTGGAGAGAATCTAGGAATCATCGAGAGTGATTTTCAGAGTTTTGAGGT ATTGGTTTTTTGATTAGGGTTTATGGGTATGATTGCAAAGTTGCAAATGACCCTCCAATAGTGTGATAGTGTTATTAGTT CACAAGGTTCAAAGTTTGAAACTTTGGTAGAAAATTTGAGGTTTTGGGGGTTTTAAGGTTTTGGGGTGTTCTAGATATGA TCAAACAGATGCTTAGTAAAATACCACGCAGGCCTTCAAAATCATCTCACAGTGATTTCAACGGTGATGAAGGGGTGGTC AATGATGGGGTTGATTCCAATTTCACCTTTAAATTCAATTCAGCTTCTTCAAAAGTCAAAACCTTTGAATTTCAGTTTGG GTGGGTCGGATTCGGGGAATTGGAGTTTTGTACTGCCCTCTACGAGTTCAGTAAAACAAACCAAGCTAAGAAATCTGCTC CTGCAGTTGCATCCCAAGTTAGTTCTGTAATGGCTCAAAGTGTTTATGAGGCTTTGCCGGCTTTTCGAGACGTTCCTAGT TCGGAAAAGCCGAATCTTTTTATCAGGAAGTTGAGTATGTGTTGTGTTGTGTTTGATTTTAATGATCCTGCCAAGCATTT TAAAGTGAAGGACATCAAGAGGCAAACTTTGCTTGAGCTTGTTGATTATATTTCGTCTGTGAATTCGAAGTTCAATGAAG TGACAATGCAGGAGGTCACGAAGATGGTGGCCGCAAACTTGTTTCGAACTCTGCCGTCTTCTAATCATGATGGTAAGGTT GCAGATGCTTATGATGTTGAAGATGAGGAACCCACGTTTGAACCGGCATGGAGTCATCTGCAGGTTGTGTATGAAATTCT CTATAGGTTTGTGGCTTCATCAGAGACAGATTCGAAGCTTGCTAAAAGATACATTGATTATTCATTTGTGTTGAAACTTC TTGACCTCTTCGACTCTGAGGACCAAAGAGAGAGGGACTATTTGAAGACTATTCTCCACCGCATTTATGGGAAGTTCATG GTACATCGGCCGTTCATTAGGAAAGCTATCAACAATACCTTTTACCAGTTCATGTTTGAGACAGAGAAACACAATGGAAT TGCAGAGTTGCTGGAGATATTAGGCAGCATAATTAATGGATTCGCTCTGCCTTTGAAAGAAGAGCATAAGCTGTTCCTTG TCCGTGCTCTGATCCCTCTTCACAGGCCGAAGTGTGTCTCTATGTATCATCAACAGCTTTCCTATTGCATTACTCCATTT GTTGAAAAGGATGTCAAGTTAGCAGATACAATTAGAGGCATTTTGAAATATTGGCCCATTACTAATAGTTCAAAGGAGGT ATTGTTCCTTGGTGAACTGGAGGAAGTTTTAGAAGCCACTCAACCTGCAGAATTTCAGCGCTGTGTGGTGCCATTGTTTT GTCAAATTGGTAGATGCCTCAACAGCCTACACTTCCAGGTACTTGCGAAATTTCCCCATTCCTTTTTCCTCTCTTGTGTC CTCAGTTTTCCAGCTACCAAACAATCAGAACAGAAGCATGCCCCATGAAAATCATATTTCTTTGATGTGAATTATGGGGG AGGGTCATATTTGGAACTGAGCCATAGAAGAAGCAAATTAGTACTAAAATTGGTTTATGAAAAACTTGGTGCAAGTTCCA ATGAAACAGGAATTCATTCAAGGCAAAGAAAATGTAAAAACTGAACACTTACAAAATTCTAATCCATACACAGTAGCATA CTTCCAAAAGCCCAAAATTCTCTCTTTATCCTCTGTACAGCATCTCTCTCTAGTCTCTACCAATCTAGTTAACCAAGCAC TATTTCTACTATCAAATACAAATGCAACTTCAATTCTGCTAGCATATAATAAAAGTATATTTCCCCGTTATGAAAAATAA TTATGGAAAGAAACCATATCTGCTTGTACTCTGAGCAAAATCTATCTCTTATTGTGTAAAGGGTTGGATCCTGTAGGAAC CCTTCGTTTCTAAGACTCGAACACTAAACCTCTGCTGCTGTTGATAGGAGACTTAGCCCCAAGATGAAAAGCTTGATTGG TTGAAGTGGAAGGGCCTGAAAACTTGGTCCTAATGGCATGAGAAGTAGGTGTAAGGAAGAGAAGGATACTCAAGAGAAGG AACAAGTGGAACTGCTTCATGTTCAATATTTAACTATATGACTCAGGCTAAGAGGGACAAAAGGTGCAAATGCAAATTTG GTGTGGGCTAAGCTTGTTTATATAGACAAATGGTTGGTCTTTGGCTCAGTTTTGTTTCTGTAATATGCTTAATGCCACCA CATTTAATTTGTGCTTAGTATTAGTACAGTTTAACGTGAACGGACTTTTATCTCTGTCCAAATGAAGAATTATGTTTACT TTTTAATTAAGTGTATACTAACGTCGATTTGCACGGATGTGATTGTATATATAAATATAGACTTGATATAAAGCACTAGT CCAGTTTGTGTGCAATTTGGGCACAAGGTGGCCTAGCTACCCTCTGATTGGGATCAAATGGTTAATGATTGGTTTGATAT CAAAATTTTTAGGTAGGGTCTCGCATAGTATCAGTGGCCTAGAATGAAGGTTGTGGGGGATGTTATATACAAGGGCCTTA ATCAAGAACATTGAATATACTGAATCACATGGGAAGTATAATCCGTATATGTGAAAAGCTTCAAAACAAGGAGCCGAAGA TATACAGTGAGTGGTTTTGCAATGACTTTTGACTTCATTCTAGAACGAAAATGCCCC
CDS sequence (LotjaGi2g1v0088800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAACAGATGCTTAGTAAAATACCACGCAGGCCTTCAAAATCATCTCACAGTGATTTCAACGGTGATGAAGGGGT GGTCAATGATGGGGTTGATTCCAATTTCACCTTTAAATTCAATTCAGCTTCTTCAAAAGTCAAAACCTTTGAATTTCAGT TTGGGTGGGTCGGATTCGGGGAATTGGAGTTTTGTACTGCCCTCTACGAGTTCAGTAAAACAAACCAAGCTAAGAAATCT GCTCCTGCAGTTGCATCCCAAGTTAGTTCTGTAATGGCTCAAAGTGTTTATGAGGCTTTGCCGGCTTTTCGAGACGTTCC TAGTTCGGAAAAGCCGAATCTTTTTATCAGGAAGTTGAGTATGTGTTGTGTTGTGTTTGATTTTAATGATCCTGCCAAGC ATTTTAAAGTGAAGGACATCAAGAGGCAAACTTTGCTTGAGCTTGTTGATTATATTTCGTCTGTGAATTCGAAGTTCAAT GAAGTGACAATGCAGGAGGTCACGAAGATGGTGGCCGCAAACTTGTTTCGAACTCTGCCGTCTTCTAATCATGATGGTAA GGTTGCAGATGCTTATGATGTTGAAGATGAGGAACCCACGTTTGAACCGGCATGGAGTCATCTGCAGGTTGTGTATGAAA TTCTCTATAGGTTTGTGGCTTCATCAGAGACAGATTCGAAGCTTGCTAAAAGATACATTGATTATTCATTTGTGTTGAAA CTTCTTGACCTCTTCGACTCTGAGGACCAAAGAGAGAGGGACTATTTGAAGACTATTCTCCACCGCATTTATGGGAAGTT CATGGTACATCGGCCGTTCATTAGGAAAGCTATCAACAATACCTTTTACCAGTTCATGTTTGAGACAGAGAAACACAATG GAATTGCAGAGTTGCTGGAGATATTAGGCAGCATAATTAATGGATTCGCTCTGCCTTTGAAAGAAGAGCATAAGCTGTTC CTTGTCCGTGCTCTGATCCCTCTTCACAGGCCGAAGTGTGTCTCTATGTATCATCAACAGCTTTCCTATTGCATTACTCC ATTTGTTGAAAAGGATGTCAAGTTAGCAGATACAATTAGAGGCATTTTGAAATATTGGCCCATTACTAATAGTTCAAAGG AGGTATTGTTCCTTGGTGAACTGGAGGAAGTTTTAGAAGCCACTCAACCTGCAGAATTTCAGCGCTGTGTGGTGCCATTG TTTTGTCAAATTGGTAGATGCCTCAACAGCCTACACTTCCAGGAACCCTTCGTTTCTAAGACTCGAACACTAAACCTCTG CTGCTGTTGA
Protein sequence (LotjaGi2g1v0088800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKQMLSKIPRRPSKSSHSDFNGDEGVVNDGVDSNFTFKFNSASSKVKTFEFQFGWVGFGELEFCTALYEFSKTNQAKKS APAVASQVSSVMAQSVYEALPAFRDVPSSEKPNLFIRKLSMCCVVFDFNDPAKHFKVKDIKRQTLLELVDYISSVNSKFN EVTMQEVTKMVAANLFRTLPSSNHDGKVADAYDVEDEEPTFEPAWSHLQVVYEILYRFVASSETDSKLAKRYIDYSFVLK LLDLFDSEDQRERDYLKTILHRIYGKFMVHRPFIRKAINNTFYQFMFETEKHNGIAELLEILGSIINGFALPLKEEHKLF LVRALIPLHRPKCVSMYHQQLSYCITPFVEKDVKLADTIRGILKYWPITNSSKEVLFLGELEEVLEATQPAEFQRCVVPL FCQIGRCLNSLHFQEPFVSKTRTLNLCCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 414 | 414 | 3.7E-203 | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 414 | 414 | 3.7E-203 | ||
| Pfam | 100 | 414 | 315 | 3.2E-143 | ||
| Gene3D | 107 | 427 | 321 | 1.1E-141 | ||
| SUPERFAMILY | 112 | 414 | 303 | 5.18E-119 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Protein phosphatase type 2A complex | A protein complex that has protein serine/threonine phosphatase activity that is polycation-stimulated (PCS), being directly stimulated by protamine, polylysine, or histone H1; it constitutes a subclass of several enzymes activated by different histones and polylysine, and consists of catalytic, scaffolding, and regulatory subunits. The catalytic and scaffolding subunits form the core enzyme, and the holoenzyme also includes the regulatory subunit. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | Protein phosphatase regulator activity | Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule. |
Expression pattern of LotjaGi2g1v0088800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…