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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0099000 |
| Transcript ID | LotjaGi2g1v0099000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|O81120|O81120_LOTJA Nodule-specific protein Nlj70; Found in the gene: LotjaGi2g1v0099000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:32507679..32510047) extracted from Lotus japonicus Gifu genome v1.2.
TCTTTCCAGCTCCGTAAGTCTAAGCCATCTCGTTTCTTCTTTGTTCCAATTGAGAAAATAGTCTCCAAATTCACGTAGAA GTATTAACTTGCTTGCTTTCTTTTGAAACATAGAAAATGATGTTCTGTACACTACATCCAGGAAATGGTTGCAAAAACAT CAAAGGATTTTCCCTCCAAGTCCTAAAAGGGAGGTGGTTCATGATGTTTGCATCATTTATGATGATGTTAGTATCAGGAG CTAGCTACATGTTTAGCCTCTACTCCAGAGAAATCAAGTTTGCTCTCGGGTATGACCAATCCACTCTCAACTTGTTAAGT TTCTTCATGGACTTAGGTTCCCACATAGGCATTCTCTCAGGTCTAATAAACGAGGTCACACCTCCTTGGGTTGCGTTATC AATGGGTGGGGTTTTCAATTTTTTTGGTTATTTCATGATTTGGCTTGCTGTGACTAAAAAAATTGCAAATCCCCAACTGT GGCACATGTGTTTGTACATTTTTATTGGAGGCAATGCTCATTGCTTTACCAACACTGTAGTTCTGGTGACCAGTGTAAAG AACTTCCCTGGGATCCGGGGCATTGTCATAGGCATTGCAGAGGGGTATTTGACTTTGAGTGCAATAATCTTCACTCAGCT CTACTATGCCTTCTTCGAAAATGATTCCAAATCTATGATTTTGCTCATGGCATGGCTACCAACTGCGACTGCTTTAATTT TCCTACCAGTTATCAAGAACCACAGGAGTATTCAACAGCCAAATGACTCCAAAGTTTTCCATAGGTTGATCTACCTGATA CTTGTTCTTGCAGGGTTCCTCATGATTATTATTGTTGTACAAAAAATTTTCAACTTCACTCAGACTGAGTATTATGTCAC TTCTACTGTGATGATTCATTTGCTTACCCTTCCACTTACTGTTGTTATTGTGGAAGAATACAAGGTTTGGAAGAGCAAAC AAGACCATATCAATTGTGAAAATCCTCCAAGCCCCACGGATGTAGCAGCAACAACAACAACGAAATCTAATCAAGTGAAG TATGAGCAGGCTCCTCATGCAGAACAGGCTCCCCGAAAAGGAGTTTCCTGTTTGCAAAACATTCTCAGGCCGCCGGAAAG GGGTGAAGATCATACAATACTTCAAGCCATTTTCAGCCTTGACATGGTAATTCTATTCCTTGCTACTATATGTGGATTTG GTAGCAACTTAACCGTGGTAAACAATTTGAGTCAGATTGCAAAGTCTTTAGGCTACCCTGCACACACCATAACCACATTC ATCTCCCTCATGGCAGTTTGGATTTTTCTAGGTAAAATTGCACAAGGGGTTGTATCAGAATTTATGATAACCAAATTGAA AACCCCTAGGCCTCTCATGCTCACAATACTCCTTGTTTTGTCGTGTATTGGTCACCTTTTAATTGCATTCAATGTTCCAA ATGCTCTATATATAGCCTCAATTGTTATTGGGTTTTGCTTTGGGGCAATCTGGCCAATTCTTTTTTCCATCATATCTGAA TTGTTTGGCCTCAAACATTACTCAACATTGTATAATGTTGGGACATTAGCGGTTCCAATTGGGTCATACTTGTTCAATGT GATGGTCGTAGGGTATCTGTATGACAAGGAAGCCAGAAAGCAAATGAAAGCATTGGGGCTAGAAAGAAAGCCAGGAGAGG AATTGAACTGCAATGGGGGCGAGTGCTACAAATTGTCTTTCATTATAATAACTGTAGTTTGTTTGCTTGGGGCACTTGTA TCATTCATTTTGGCGCTTAGGACTAAAAAATTCTACAAAACTGACATATACAAGAAATTCAACGAAGAATCTAGAACTGC AGAAATTGAAAGTGTTGTTCCTCAACAAGAATGAACCACATGCTGCTGCAGACGAAGGCTCTATCTTCTCCAAGGAAATG GTAAAAGAAAAACTTGGGGTGAGCACCACCTTTAATGGTAAAGGTTATTGTAACAATCTCAATTCTTAGCCACTACCGCA ACCTTTAATTTTCCCTATTTTTATTTTTATGTATTTTTATGTTTTTATCACATCATATTATATTTTATACTTAATTAAGT TTTTGGTTCCTAACCTTTACACCACTTTTGGTTTTAGACCCCTCGCAAATGTGGGAGGTCGTCCCTATCCTTTGAGGCAT TGTTTGGTTTTAGTCCCTTCGGTAGTCAACGCCGGAGCTCCCACAATTAGGGGTGAACATGGGCGGATAGATCCAATGAA CCCGTCCAACCCAATCCGATCCAATAGAAAAAATGCGGGTTGGATCGGGCAATCGGGTTAATCGGATGGATTTTACTACA ACCCAACCAAGTTCGGATCGGATTTCGGATTCAGTTCAAATCCATCCAA
CDS sequence (LotjaGi2g1v0099000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTCTGTACACTACATCCAGGAAATGGTTGCAAAAACATCAAAGGATTTTCCCTCCAAGTCCTAAAAGGGAGGTG GTTCATGATGTTTGCATCATTTATGATGATGTTAGTATCAGGAGCTAGCTACATGTTTAGCCTCTACTCCAGAGAAATCA AGTTTGCTCTCGGGTATGACCAATCCACTCTCAACTTGTTAAGTTTCTTCATGGACTTAGGTTCCCACATAGGCATTCTC TCAGGTCTAATAAACGAGGTCACACCTCCTTGGGTTGCGTTATCAATGGGTGGGGTTTTCAATTTTTTTGGTTATTTCAT GATTTGGCTTGCTGTGACTAAAAAAATTGCAAATCCCCAACTGTGGCACATGTGTTTGTACATTTTTATTGGAGGCAATG CTCATTGCTTTACCAACACTGTAGTTCTGGTGACCAGTGTAAAGAACTTCCCTGGGATCCGGGGCATTGTCATAGGCATT GCAGAGGGGTATTTGACTTTGAGTGCAATAATCTTCACTCAGCTCTACTATGCCTTCTTCGAAAATGATTCCAAATCTAT GATTTTGCTCATGGCATGGCTACCAACTGCGACTGCTTTAATTTTCCTACCAGTTATCAAGAACCACAGGAGTATTCAAC AGCCAAATGACTCCAAAGTTTTCCATAGGTTGATCTACCTGATACTTGTTCTTGCAGGGTTCCTCATGATTATTATTGTT GTACAAAAAATTTTCAACTTCACTCAGACTGAGTATTATGTCACTTCTACTGTGATGATTCATTTGCTTACCCTTCCACT TACTGTTGTTATTGTGGAAGAATACAAGGTTTGGAAGAGCAAACAAGACCATATCAATTGTGAAAATCCTCCAAGCCCCA CGGATGTAGCAGCAACAACAACAACGAAATCTAATCAAGTGAAGTATGAGCAGGCTCCTCATGCAGAACAGGCTCCCCGA AAAGGAGTTTCCTGTTTGCAAAACATTCTCAGGCCGCCGGAAAGGGGTGAAGATCATACAATACTTCAAGCCATTTTCAG CCTTGACATGGTAATTCTATTCCTTGCTACTATATGTGGATTTGGTAGCAACTTAACCGTGGTAAACAATTTGAGTCAGA TTGCAAAGTCTTTAGGCTACCCTGCACACACCATAACCACATTCATCTCCCTCATGGCAGTTTGGATTTTTCTAGGTAAA ATTGCACAAGGGGTTGTATCAGAATTTATGATAACCAAATTGAAAACCCCTAGGCCTCTCATGCTCACAATACTCCTTGT TTTGTCGTGTATTGGTCACCTTTTAATTGCATTCAATGTTCCAAATGCTCTATATATAGCCTCAATTGTTATTGGGTTTT GCTTTGGGGCAATCTGGCCAATTCTTTTTTCCATCATATCTGAATTGTTTGGCCTCAAACATTACTCAACATTGTATAAT GTTGGGACATTAGCGGTTCCAATTGGGTCATACTTGTTCAATGTGATGGTCGTAGGGTATCTGTATGACAAGGAAGCCAG AAAGCAAATGAAAGCATTGGGGCTAGAAAGAAAGCCAGGAGAGGAATTGAACTGCAATGGGGGCGAGTGCTACAAATTGT CTTTCATTATAATAACTGTAGTTTGTTTGCTTGGGGCACTTGTATCATTCATTTTGGCGCTTAGGACTAAAAAATTCTAC AAAACTGACATATACAAGAAATTCAACGAAGAATCTAGAACTGCAGAAATTGAAAGTGTTGTTCCTCAACAAGAATGA
Protein sequence (LotjaGi2g1v0099000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFCTLHPGNGCKNIKGFSLQVLKGRWFMMFASFMMMLVSGASYMFSLYSREIKFALGYDQSTLNLLSFFMDLGSHIGIL SGLINEVTPPWVALSMGGVFNFFGYFMIWLAVTKKIANPQLWHMCLYIFIGGNAHCFTNTVVLVTSVKNFPGIRGIVIGI AEGYLTLSAIIFTQLYYAFFENDSKSMILLMAWLPTATALIFLPVIKNHRSIQQPNDSKVFHRLIYLILVLAGFLMIIIV VQKIFNFTQTEYYVTSTVMIHLLTLPLTVVIVEEYKVWKSKQDHINCENPPSPTDVAATTTTKSNQVKYEQAPHAEQAPR KGVSCLQNILRPPERGEDHTILQAIFSLDMVILFLATICGFGSNLTVVNNLSQIAKSLGYPAHTITTFISLMAVWIFLGK IAQGVVSEFMITKLKTPRPLMLTILLVLSCIGHLLIAFNVPNALYIASIVIGFCFGAIWPILFSIISELFGLKHYSTLYN VGTLAVPIGSYLFNVMVVGYLYDKEARKQMKALGLERKPGEELNCNGGECYKLSFIIITVVCLLGALVSFILALRTKKFY KTDIYKKFNEESRTAEIESVVPQQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 10 | 583 | 574 | 0.0 | – | |
| PANTHER | 10 | 583 | 574 | 0.0 | – | |
| CDD | 25 | 546 | 522 | 3.79696E-98 | – | |
| SUPERFAMILY | 25 | 559 | 535 | 7.15E-31 | ||
| Pfam | 26 | 271 | 246 | 1.4E-77 | ||
| Phobius | 27 | 46 | 20 | - | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 47 | 65 | 19 | - | – | |
| TMHMM | 62 | 84 | 23 | - | – | |
| Phobius | 66 | 84 | 19 | - | – | |
| Phobius | 85 | 90 | 6 | - | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 91 | 112 | 22 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| Phobius | 124 | 144 | 21 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 145 | 155 | 11 | - | – | |
| Phobius | 156 | 180 | 25 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 181 | 185 | 5 | - | – | |
| Phobius | 186 | 203 | 18 | - | – | |
| TMHMM | 186 | 205 | 20 | - | – | |
| Phobius | 204 | 223 | 20 | - | – | |
| TMHMM | 220 | 241 | 22 | - | – | |
| Phobius | 224 | 246 | 23 | - | – | |
| Phobius | 247 | 251 | 5 | - | – | |
| Phobius | 252 | 272 | 21 | - | – | |
| TMHMM | 253 | 272 | 20 | - | – | |
| Phobius | 273 | 340 | 68 | - | – | |
| Gene3D | 341 | 562 | 222 | 3.6E-16 | – | |
| Phobius | 341 | 366 | 26 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| Pfam | 353 | 555 | 203 | 9.0E-13 | ||
| Phobius | 367 | 377 | 11 | - | – | |
| TMHMM | 377 | 399 | 23 | - | – | |
| Phobius | 378 | 398 | 21 | - | – | |
| Phobius | 399 | 418 | 20 | - | – | |
| TMHMM | 419 | 438 | 20 | - | – | |
| Phobius | 419 | 438 | 20 | - | – | |
| Phobius | 439 | 443 | 5 | - | – | |
| TMHMM | 443 | 465 | 23 | - | – | |
| Phobius | 444 | 466 | 23 | - | – | |
| Phobius | 467 | 477 | 11 | - | – | |
| Phobius | 478 | 502 | 25 | - | – | |
| TMHMM | 480 | 502 | 23 | - | – | |
| Phobius | 503 | 532 | 30 | - | – | |
| TMHMM | 533 | 555 | 23 | - | – | |
| Phobius | 533 | 554 | 22 | - | – | |
| Phobius | 555 | 585 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0099000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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