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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0100600 |
Transcript ID | LotjaGi2g1v0100600.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G42630.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630; TrEMBL-Plants: tr|A0A0B2SHD9|A0A0B2SHD9_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0100600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:33446068..33451184) extracted from Lotus japonicus Gifu genome v1.2.
CACTCACACTTGACACTATTTTTCTTCCTCTGACCCTCCAGTCGTTCGATTTCTTTCATTCTCAAGTCAATGGAAATACA CTCTCTTACACTCCTCTCTTGCCATATTCCCATTCCGCGAAAGAACGATGGCACTGTAGCTCCACAACGCGACAAGGTTC CAATTTTTCATTCCAATTCTGAGATTAATCAAACCATTCATCACTTTCACTAAGTAATTTTTCATTCCAATTCATGTCAG GGTTTATGATTATCTTGTTCATAGATATTTATGGTTTCCACCTACTTGAACTATATATATATATATTATAAAGACAAAAT TTTAACATGACAATATAGGTGAAACTTCAACTTGAGATTTGAGAGGATTTGATGTGGGTATGTAGAATTTTTGTCAAGGA TCACCATTTATGCCAACTACACTTTTTAATTTCTTGCTTTGAATAGGGAATCCGATGGCGGAATGAAAAGAGATTTCTTA GTGGTATGAACAAGTCTTCAGATTGCGCTTCATTCGTCGAAAAAAGGTTGTCTTATCAATCTGATGGGGTTTTTAATGAT ATGAAGCTTGATGGTTATATGCCTGAGCAATCTACTTTGCCTGCATTGATGTTATATTATGCGGAGAATGGCCTCTTTCC TCAAGCGCAGACTACGTGGGAGCAACTCGTAAATAGTTCTTTTGTGCCGTCTATTCCATTCGTTTCAAGATTGTTTGATG CTTATGGGAAACACAGGAAATTCGATGAAGTGGTCAATATTCTACATTGTATGAATTTGAGGAATTTCAGTATATTACCT GATGTGTACTCATTGGCTATCTCTTGTCTTGGGAGAGGAGGACAGCTTGAGTTGATGGAAGATGCAGCAAAGGAGATGGT TTCGAGGGGTTTCCCGATGGGTTCTGACACTGGAAATGCTTTCCTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGAAA TGGAGAATGCATATGGCCGCCTTAAGAGATCAAGGTTTCTGATAGAGGAGGAAGCGATTCGGGCCATGGCCTCTGCATAT CTAAAGGAGATAAAATTCTATGAATTGGGTGAGTTTGTTAGAGATGTGGGTTTAGGTAGGAAAAATGTAGGAAACCTTTT ATGGAACCTTATGTTACTTTCTTATGCTGTCAATTTCAAAATGAAAAGCTTGCAGAGAGAATTTCTTAGAATGGTTGAAG CTGGGTTCCGCCTTGATGTTACTACCTTCAATATTCGAGCTCTGGCCTTTTCTAGGATGTCTCTGTTCTGGGACCTCCAC CTTAGCATTGAACACATGAATCATGAAAAGGTCATTCCTGATCTAGTTACTTATGGGTGTGTAGTTGATGCATACCTGGA TAGAAAGCTAGGAAGAAACTTGGACTTTGCCCTAAACAAACTGAACTTGGATGATTCTCCAAGATTGTTAACAGATCCGC TTGTGTTTGAGGCCTTAGGTAAAGGGGACTTTCACATGAGTTCAGAGGCATTTTTTGAATACAAGACACAAAGGCGATGG ACTTACAGGACTTTAATACAAAAATATTTTAAGAAACATTACCGGAGAAACCAGATCTTTTGGAACTACTAAGTAGTGGC CAGATGTTCTGGTCCATTCAATTTCTGGCCAGGTAGTTAACTTGAAACAATGTTTTACTGAATTTGTGGCTCAGCAGAAC AAAAAGCTAACTATCTTTCTTTGTTTTTCTTTTGACAAGACCTTGATTCCATACAGAATCCAGTATTATTTTTTGAACAG AATATAGACATCCAGTATGTAGTTGACTTGGAACATAATTCTACTGTTGGTGTATGCACTTGAGGGTGAAGTGTCAAGTT GGAGACATCTTAAACGCTTTGTTGATAAAGAACATTATCATGTATAGTTGAAGGTGAAAGGAACATCACATACATCCTAT TTTGAAGAAACCAGCAGGAACTGATAATTGGTAAGGTTCAATGTTTAACAATTTTCAAGTTAGCGCCTCCTACCAATAGA AGCTTGCTTATTTCTTGGCCCTAAATTTGTTCAGGCATGCATATGTTCATTCTTTATGGATTCTGTAGTTCTCCTATCAT TGTTTGATCATCTTATTTTTCCATTAGGGTCGCCAACTAATTTATAAGTTATTGTGACTCTAAATATTAAATTGTTCAAA CAAATTGTATGGGGAAAAGTTCAAAATAGAGTGTGCCCACCTGTGTTTAATCTATCGAATTTTCAACTTTTTTCAAGTGT TTAGTGAATTTTGTAGAAGGTCAATAGGGAAAGTGGAAATGGAAGTATGAAAACTGTCATGGGATATTTGCAGCTGATGA TATCTTTGGTTAGAGTTAAAGCATTAACAATATCCAGATTACCACACACGTAAGGGCTGTGTTTCTCAGTAATCTGCTGA TAGAAACCTGGTACTTTATTAGATAATGCAAGGAAGAATTTCCTTGATCACAGAAAAGAACTCACACAGCAAATCTTCTC TGGTCTGTACCCTGCCCTTTCCTGAGGCCCCGATTTCCTCTCAAATGCCTAGATAACTTTCCCTCTCCCTCTACTCTTTA TTCATAGGCGAAATGCCTTATTTCTTATCCTTATCTCATCCCAAATAACCTAACTAACTATCTCTCTCACTTACAGTCAC TAACAGACACATTACATCTGCCTTTTTTTCTTCAGGTTCATTAGATAACAAGTCTGTGTTATGTGAAAAGCTCATATGCA TGTCTGCATTTTGTCTTTCTTTCCGTATTCCCCTCACTTTTAAAGTACCGTATTTAAGATCCAATCAAGCATTGAAATTG TTGGCTTTTGAGGTCCATAGATGACTATTGGATTTCCTACCTGTTGTTTGTCTTTTCTGATTACATATTTCTATGATTGC TAAATTACATTTATACTTGATTTGACTAGTTGTAGTAGATGTGATATATAGTCAGCAACACATTGATTATCCTCCATTTG CAACGAACGAAGCTTGAAGAGTGCATTTATCTTTTGATATTAGACCTGCACAACAAAGAATAAATGTTATAGAAATTGTT CAATTCACAATACAAGATCAGACGTTCTGATTTGAGTCCTGCACTCTGCAATGCAAACCAGACAGTAAATCGGAGCGTGG ATAAAATGTGACTTCAGTAACCAGAATTGCCTGCAAGCAGTAAAGTCTGCAGCCATAGAAAGTTTAGAATGCGAGTTTGA TCACTACCCGTCCAACTTAGAACAATTTGAGTAGATGCAGCTTATAGATAAAGTTACTGACAAGAGGTGGAGTGCAGCCA TATAAAGTTTAGAACGCGAGTTTGGTCACTACCTGTCCAACTTAGAACAATTTGAGTAGATGCAGCTTATAGATAAAGTT ACTGACAAGAGGTGGAGTGCAGCCACAGAAAGTTTATTACCCTGCAGGTTCCATCACCTTTTCATGTAATTTGAAATATT TTGTGATAGTAAACTTTGAACTGGCTCATCAATTGAAGCATTGAAAGTTTAATTGTGTGGTTTTGTCACTGCTACTACTC TTTTCTTAAAATACTGGGTTAGGAATTTGCATTTTCTCCTTGTCTAAATGATAATGGGAGGAATATTTATCATCGTTGAT AATTGCATATGTTGCTTGCTGTCTTATGCAAGACATACCTGAACCTCTGTAAACCTTCCTTTTAGGCTCTGTTGCATGGG TACGGCTGTTTTGGCCGCGTACCCGTACCGGGTACGTACCCGGTACGCATACGCTGTGGGTACGTACCCGGTACCTACCC GTTCCAAAAAAAAAAAATGGTTCCTGGGCTCAAAACGACGACGACGTTTTGCCTTTTTTTTTTTTTTTTCCGGGCTCAAA ACGACGTCGTTTTGGCCTTTATATTTTTTTTCCTAGCTCAAAACGACGACGTTTTGCCTTTTTTTTGCATAATTTATTTA TATTTAAATATTATGTATATTTTATTATATATTATATTTAAAAAAATATACATATATCTAACGTACCCGTACCCCTGTTT TTTCAAAAATCGCGTACCGCGTACCTAATACCGTACCCGTACCCGTGCAACACAGCTTTTAGGGTTCGTTTGTTCTAGAT CTGTAATTCAATTATCAATTTGGGTATTATGTTGGTGTTATTTCTACACTTTTATTTGTGATGGGTTTCTTGTTGTCTAC ATTCCATAAAATGTGCCAGACTGCCAAGTTCACCACTTTTATGGATGAAGTTAGAATGCACTTTGATGCTTATTGTGTAA TGTTTTTGTCCTCCTTTTTTTGTATTCTTTCATGTGCTGTACATCATTTCTTATGAACTATTGTGTATGGACACATGATG TTCTCTGCTGTTGCTTTTCATGCCGTTATAATCTGTGGTTTACATCTTATGTATCAGCTCCCTTGTGTTATTAGGAAATT CAAATTTGTGTAGAGTTTCTTAAGTTTTTATCAGGTTATTATTGTTGCTTTAAAGTAATGTTCTGCTATCATTTCAAATA AGCAGTTGTCACTTGTCATGAGGAAGTTGCTTGGAGGAAGTTTTATTAAGATTACTAACAATGCCTGTAAAAATTATGAG TTTAAGATTGCATCTAAAGCAAGGTGAACCAATCACTTGGTTTGCCTCAAGACCCAAGAAAATTCTGAAATTCTTCAGAG TTGTAGGAATATTTGCAAGGAAACTATGCACACTACAAATTCTTCAGCACTCACTTGGTTTGCCTCAAGCCAGATGTATA ACAACTTAACAGAAAGACTTCCCTGGATTCTGAATCTTCTATTATCTAAGGTTTATTGCTGCTTCAAGTTCTTCCATATC TCAATACATTAAGAAACTCGCTCTACAACAATATCCTACACAATTAAACAAATGTTTTAAAAAATATAGGATGCCATAAA AATTATAAAAGTTACTTTTATATAAAAACATGAATACTTTGGCGACTCATCCCGAGAGATACGGTGGGGGGTAGGGACTT ATCTCTGCTGGTCGGGTTTTGGTTTCGCAGTGAGGGCTTGTTTTTATAATAATTTGGTTGTTTTGGTTGTTGTTGGCTTG TCATAGTTGCTTTCGTTTTTCGTTGTCGTTTTGTTCGTTTGCTTTCGTCTTGTCTTCGTGCTTTTGTTGTATTGCCC
CDS sequence (LotjaGi2g1v0100600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATACACTCTCTTACACTCCTCTCTTGCCATATTCCCATTCCGCGAAAGAACGATGGCACTGTAGCTCCACAACG CGACAAGGGAATCCGATGGCGGAATGAAAAGAGATTTCTTAGTGGTATGAACAAGTCTTCAGATTGCGCTTCATTCGTCG AAAAAAGGTTGTCTTATCAATCTGATGGGGTTTTTAATGATATGAAGCTTGATGGTTATATGCCTGAGCAATCTACTTTG CCTGCATTGATGTTATATTATGCGGAGAATGGCCTCTTTCCTCAAGCGCAGACTACGTGGGAGCAACTCGTAAATAGTTC TTTTGTGCCGTCTATTCCATTCGTTTCAAGATTGTTTGATGCTTATGGGAAACACAGGAAATTCGATGAAGTGGTCAATA TTCTACATTGTATGAATTTGAGGAATTTCAGTATATTACCTGATGTGTACTCATTGGCTATCTCTTGTCTTGGGAGAGGA GGACAGCTTGAGTTGATGGAAGATGCAGCAAAGGAGATGGTTTCGAGGGGTTTCCCGATGGGTTCTGACACTGGAAATGC TTTCCTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGAAATGGAGAATGCATATGGCCGCCTTAAGAGATCAAGGTTTC TGATAGAGGAGGAAGCGATTCGGGCCATGGCCTCTGCATATCTAAAGGAGATAAAATTCTATGAATTGGGTGAGTTTGTT AGAGATGTGGGTTTAGGTAGGAAAAATGTAGGAAACCTTTTATGGAACCTTATGTTACTTTCTTATGCTGTCAATTTCAA AATGAAAAGCTTGCAGAGAGAATTTCTTAGAATGGTTGAAGCTGGGTTCCGCCTTGATGTTACTACCTTCAATATTCGAG CTCTGGCCTTTTCTAGGATGTCTCTGTTCTGGGACCTCCACCTTAGCATTGAACACATGAATCATGAAAAGGTCATTCCT GATCTAGTTACTTATGGGTGTGTAGTTGATGCATACCTGGATAGAAAGCTAGGAAGAAACTTGGACTTTGCCCTAAACAA ACTGAACTTGGATGATTCTCCAAGATTGTTAACAGATCCGCTTGTGTTTGAGGCCTTAGGTAAAGGGGACTTTCACATGA GTTCAGAGGCATTTTTTGAATACAAGACACAAAGGCGATGGACTTACAGGACTTTAATACAAAAATATTTTAAGAAACAT TACCGGAGAAACCAGATCTTTTGGAACTACTAA
Protein sequence (LotjaGi2g1v0100600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIHSLTLLSCHIPIPRKNDGTVAPQRDKGIRWRNEKRFLSGMNKSSDCASFVEKRLSYQSDGVFNDMKLDGYMPEQSTL PALMLYYAENGLFPQAQTTWEQLVNSSFVPSIPFVSRLFDAYGKHRKFDEVVNILHCMNLRNFSILPDVYSLAISCLGRG GQLELMEDAAKEMVSRGFPMGSDTGNAFLLYYSIFGSLKEMENAYGRLKRSRFLIEEEAIRAMASAYLKEIKFYELGEFV RDVGLGRKNVGNLLWNLMLLSYAVNFKMKSLQREFLRMVEAGFRLDVTTFNIRALAFSRMSLFWDLHLSIEHMNHEKVIP DLVTYGCVVDAYLDRKLGRNLDFALNKLNLDDSPRLLTDPLVFEALGKGDFHMSSEAFFEYKTQRRWTYRTLIQKYFKKH YRRNQIFWNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 22 | 410 | 389 | 1.3E-188 | – | |
PANTHER | 22 | 410 | 389 | 1.3E-188 | – | |
Gene3D | 61 | 243 | 183 | 1.1E-18 | ||
Pfam | 118 | 141 | 24 | 0.14 | ||
Pfam | 149 | 178 | 30 | 0.2 | ||
TIGRFAM | 149 | 179 | 31 | 8.5E-4 | ||
Gene3D | 247 | 348 | 102 | 5.3E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0100600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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