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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0100600 |
Transcript ID | LotjaGi2g1v0100600.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G42630.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630; TrEMBL-Plants: tr|A0A0B2SHD9|A0A0B2SHD9_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0100600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:33447647..33451183) extracted from Lotus japonicus Gifu genome v1.2.
ACTCACACTTGACACTATTTTTCTTCCTCTGACCCTCCAGTCGTTCGATTTCTTTCATTCTCAAGTCAATGGAAATACAC TCTCTTACACTCCTCTCTTGCCATATTCCCATTCCGCGAAAGAACGATGGCACTGTAGCTCCACAACGCGACAAGGTTCC AATTTTTCATTCCAATTCTGAGATTAATCAAACCATTCATCACTTTCACTAAGTAATTTTTCATTCCAATTCATGTCAGG GTTTATGATTATCTTGTTCATAGATATTTATGGTTTCCACCTACTTGAACTATATATATATATATTATAAAGACAAAATT TTAACATGACAATATAGGTGAAACTTCAACTTGAGATTTGAGAGGATTTGATGTGGGTATGTAGAATTTTTGTCAAGGAT CACCATTTATGCCAACTACACTTTTTAATTTCTTGCTTTGAATAGGGAATCCGATGGCGGAATGAAAAGAGATTTCTTAG TGGTATGAACAAGTCTTCAGATTGCGCTTCATTCGTCGAAAAAAGGTTGTCTTATCAATCTGATGGGGTTTTTAATGATA TGAAGCTTGATGGTTATATGCCTGAGCAATCTACTTTGCCTGCATTGATGTTATATTATGCGGAGAATGGCCTCTTTCCT CAAGCGCAGACTACGTGGGAGCAACTCGTAAATAGTTCTTTTGTGCCGTCTATTCCATTCGTTTCAAGATTGTTTGATGC TTATGGGAAACACAGGAAATTCGATGAAGTGGTCAATATTCTACATTGTATGAATTTGAGGAATTTCAGTATATTACCTG ATGTGTACTCATTGGCTATCTCTTGTCTTGGGAGAGGAGGACAGCTTGAGTTGATGGAAGATGCAGCAAAGGAGATGGTT TCGAGGGGTTTCCCGATGGGTTCTGACACTGGAAATGCTTTCCTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGAAAT GGAGAATGCATATGGCCGCCTTAAGAGATCAAGGTTTCTGATAGAGGAGGAAGCGATTCGGGCCATGGCCTCTGCATATC TAAAGGAGATAAAATTCTATGAATTGGGTGAGTTTGTTAGAGATGTGGGTTTAGGTAGGAAAAATGTAGGAAACCTTTTA TGGAACCTTATGTTACTTTCTTATGCTGTCAATTTCAAAATGAAAAGCTTGCAGAGAGAATTTCTTAGAATGGTTGAAGC TGGGTTCCGCCTTGATGTTACTACCTTCAATATTCGAGCTCTGGCCTTTTCTAGGATGTCTCTGTTCTGGGACCTCCACC TTAGCATTGAACACATGAATCATGAAAAGGTCATTCCTGATCTAGTTACTTATGGGTGTGTAGTTGATGCATACCTGGAT AGAAAGCTAGGAAGAAACTTGGACTTTGCCCTAAACAAACTGAACTTGGATGATTCTCCAAGATTGTTAACAGATCCGCT TGTGTTTGAGGCCTTAGGTAAAGGGGACTTTCACATGAGTTCAGAGGCATTTTTTGAATACAAGACACAAAGGCGATGGA CTTACAGGACTTTAATACAAAAATATTTTAAGAAACATTACCGGAGAAACCAGATCTTTTGGAACTACTAAGTAGTGGCC AGATGTTCTGGTCCATTCAATTTCTGGCCAGGTAGTTAACTTGAAACAATGTTTTACTGAATTTGTGGCTCAGCAGAACA AAAAGCTAACTATCTTTCTTTGTTTTTCTTTTGACAAGACCTTGATTCCATACAGAATCCAGTATTATTTTTTGAACAGA ATATAGACATCCAGTATGTAGTTGACTTGGAACATAATTCTACTGTTGGTGTATGCACTTGAGGGTGAAGTGTCAAGTTG GAGACATCTTAAACGCTTTGTTGATAAAGAACATTATCATGTATAGTTGAAGGTGAAAGGAACATCACATACATCCTATT TTGAAGAAACCAGCAGGAACTGATAATTGGTAAGGTTCAATGTTTAACAATTTTCAAGTTAGCGCCTCCTACCAATAGAA GCTTGCTTATTTCTTGGCCCTAAATTTGTTCAGGCATGCATATGTTCATTCTTTATGGATTCTGTAGTTCTCCTATCATT GTTTGATCATCTTATTTTTCCATTAGGGTCGCCAACTAATTTATAAGTTATTGTGACTCTAAATATTAAATTGTTCAAAC AAATTGTATGGGGAAAAGTTCAAAATAGAGTGTGCCCACCTGTGTTTAATCTATCGAATTTTCAACTTTTTTCAAGTGTT TAGTGAATTTTGTAGAAGGTCAATAGGGAAAGTGGAAATGGAAGTATGAAAACTGTCATGGGATATTTGCAGCTGATGAT ATCTTTGGTTAGAGTTAAAGCATTAACAATATCCAGATTACCACACACGTAAGGGCTGTGTTTCTCAGTAATCTGCTGAT AGAAACCTGGTACTTTATTAGATAATGCAAGGAAGAATTTCCTTGATCACAGAAAAGAACTCACACAGCAAATCTTCTCT GGTCTGTACCCTGCCCTTTCCTGAGGCCCCGATTTCCTCTCAAATGCCTAGATAACTTTCCCTCTCCCTCTACTCTTTAT TCATAGGCGAAATGCCTTATTTCTTATCCTTATCTCATCCCAAATAACCTAACTAACTATCTCTCTCACTTACAGTCACT AACAGACACATTACATCTGCCTTTTTTTCTTCAGGTTCATTAGATAACAAGTCTGTGTTATGTGAAAAGCTCATATGCAT GTCTGCATTTTGTCTTTCTTTCCGTATTCCCCTCACTTTTAAAGTACCGTATTTAAGATCCAATCAAGCATTGAAATTGT TGGCTTTTGAGGTCCATAGATGACTATTGGATTTCCTACCTGTTGTTTGTCTTTTCTGATTACATATTTCTATGATTGCT AAATTACATTTATACTTGATTTGACTAGTTGTAGTAGATGTGATATATAGTCAGCAACACATTGATTATCCTCCATTTGC AACGAACGAAGCTTGAAGAGTGCATTTATCTTTTGATATTAGACCTGCACAACAAAGAATAAATGTTATAGAAATTGTTC AATTCACAATACAAGATCAGACGTTCTGATTTGAGTCCTGCACTCTGCAATGCAAACCAGACAGTAAATCGGAGCGTGGA TAAAATGTGACTTCAGTAACCAGAATTGCCTGCAAGCAGTAAAGTCTGCAGCCATAGAAAGTTTAGAATGCGAGTTTGAT CACTACCCGTCCAACTTAGAACAATTTGAGTAGATGCAGCTTATAGATAAAGTTACTGACAAGAGGTGGAGTGCAGCCAT ATAAAGTTTAGAACGCGAGTTTGGTCACTACCTGTCCAACTTAGAACAATTTGAGTAGATGCAGCTTATAGATAAAGTTA CTGACAAGAGGTGGAGTGCAGCCACAGAAAGTTTATTACCCTGCAGGTTCCATCACCTTTTCATGTAATTTGAAATATTT TGTGATAGTAAACTTTGAACTGGCTCATCAATTGAAGCATTGAAAGTTTAATTGTGTGGTTTTGTCACTGCTACTACTCT TTTCTTAAAATACTGGG
CDS sequence (LotjaGi2g1v0100600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAGTCTTCAGATTGCGCTTCATTCGTCGAAAAAAGGTTGTCTTATCAATCTGATGGGGTTTTTAATGATATGAA GCTTGATGGTTATATGCCTGAGCAATCTACTTTGCCTGCATTGATGTTATATTATGCGGAGAATGGCCTCTTTCCTCAAG CGCAGACTACGTGGGAGCAACTCGTAAATAGTTCTTTTGTGCCGTCTATTCCATTCGTTTCAAGATTGTTTGATGCTTAT GGGAAACACAGGAAATTCGATGAAGTGGTCAATATTCTACATTGTATGAATTTGAGGAATTTCAGTATATTACCTGATGT GTACTCATTGGCTATCTCTTGTCTTGGGAGAGGAGGACAGCTTGAGTTGATGGAAGATGCAGCAAAGGAGATGGTTTCGA GGGGTTTCCCGATGGGTTCTGACACTGGAAATGCTTTCCTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGAAATGGAG AATGCATATGGCCGCCTTAAGAGATCAAGGTTTCTGATAGAGGAGGAAGCGATTCGGGCCATGGCCTCTGCATATCTAAA GGAGATAAAATTCTATGAATTGGGTGAGTTTGTTAGAGATGTGGGTTTAGGTAGGAAAAATGTAGGAAACCTTTTATGGA ACCTTATGTTACTTTCTTATGCTGTCAATTTCAAAATGAAAAGCTTGCAGAGAGAATTTCTTAGAATGGTTGAAGCTGGG TTCCGCCTTGATGTTACTACCTTCAATATTCGAGCTCTGGCCTTTTCTAGGATGTCTCTGTTCTGGGACCTCCACCTTAG CATTGAACACATGAATCATGAAAAGGTCATTCCTGATCTAGTTACTTATGGGTGTGTAGTTGATGCATACCTGGATAGAA AGCTAGGAAGAAACTTGGACTTTGCCCTAAACAAACTGAACTTGGATGATTCTCCAAGATTGTTAACAGATCCGCTTGTG TTTGAGGCCTTAGGTAAAGGGGACTTTCACATGAGTTCAGAGGCATTTTTTGAATACAAGACACAAAGGCGATGGACTTA CAGGACTTTAATACAAAAATATTTTAAGAAACATTACCGGAGAAACCAGATCTTTTGGAACTACTAA
Protein sequence (LotjaGi2g1v0100600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKSSDCASFVEKRLSYQSDGVFNDMKLDGYMPEQSTLPALMLYYAENGLFPQAQTTWEQLVNSSFVPSIPFVSRLFDAY GKHRKFDEVVNILHCMNLRNFSILPDVYSLAISCLGRGGQLELMEDAAKEMVSRGFPMGSDTGNAFLLYYSIFGSLKEME NAYGRLKRSRFLIEEEAIRAMASAYLKEIKFYELGEFVRDVGLGRKNVGNLLWNLMLLSYAVNFKMKSLQREFLRMVEAG FRLDVTTFNIRALAFSRMSLFWDLHLSIEHMNHEKVIPDLVTYGCVVDAYLDRKLGRNLDFALNKLNLDDSPRLLTDPLV FEALGKGDFHMSSEAFFEYKTQRRWTYRTLIQKYFKKHYRRNQIFWNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 368 | 362 | 5.2E-187 | – | |
PANTHER | 7 | 368 | 362 | 5.2E-187 | – | |
Gene3D | 10 | 202 | 193 | 7.0E-19 | ||
Pfam | 76 | 99 | 24 | 0.13 | ||
Pfam | 107 | 136 | 30 | 0.18 | ||
TIGRFAM | 107 | 137 | 31 | 7.4E-4 | ||
Gene3D | 205 | 306 | 102 | 4.4E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0100600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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