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LotjaGi2g1v0100600.4

Overview

Field Value
Gene ID LotjaGi2g1v0100600
Transcript ID LotjaGi2g1v0100600.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT3G42630.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M2A1|PP263_ARATH Pentatricopeptide repeat-containing protein At3g42630; TrEMBL-Plants: tr|A0A0B2SHD9|A0A0B2SHD9_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0100600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:33447647..33451183) extracted from Lotus japonicus Gifu genome v1.2.

ACTCACACTTGACACTATTTTTCTTCCTCTGACCCTCCAGTCGTTCGATTTCTTTCATTCTCAAGTCAATGGAAATACAC TCTCTTACACTCCTCTCTTGCCATATTCCCATTCCGCGAAAGAACGATGGCACTGTAGCTCCACAACGCGACAAGGTTCC AATTTTTCATTCCAATTCTGAGATTAATCAAACCATTCATCACTTTCACTAAGTAATTTTTCATTCCAATTCATGTCAGG GTTTATGATTATCTTGTTCATAGATATTTATGGTTTCCACCTACTTGAACTATATATATATATATTATAAAGACAAAATT TTAACATGACAATATAGGTGAAACTTCAACTTGAGATTTGAGAGGATTTGATGTGGGTATGTAGAATTTTTGTCAAGGAT CACCATTTATGCCAACTACACTTTTTAATTTCTTGCTTTGAATAGGGAATCCGATGGCGGAATGAAAAGAGATTTCTTAG TGGTATGAACAAGTCTTCAGATTGCGCTTCATTCGTCGAAAAAAGGTTGTCTTATCAATCTGATGGGGTTTTTAATGATA TGAAGCTTGATGGTTATATGCCTGAGCAATCTACTTTGCCTGCATTGATGTTATATTATGCGGAGAATGGCCTCTTTCCT CAAGCGCAGACTACGTGGGAGCAACTCGTAAATAGTTCTTTTGTGCCGTCTATTCCATTCGTTTCAAGATTGTTTGATGC TTATGGGAAACACAGGAAATTCGATGAAGTGGTCAATATTCTACATTGTATGAATTTGAGGAATTTCAGTATATTACCTG ATGTGTACTCATTGGCTATCTCTTGTCTTGGGAGAGGAGGACAGCTTGAGTTGATGGAAGATGCAGCAAAGGAGATGGTT TCGAGGGGTTTCCCGATGGGTTCTGACACTGGAAATGCTTTCCTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGAAAT GGAGAATGCATATGGCCGCCTTAAGAGATCAAGGTTTCTGATAGAGGAGGAAGCGATTCGGGCCATGGCCTCTGCATATC TAAAGGAGATAAAATTCTATGAATTGGGTGAGTTTGTTAGAGATGTGGGTTTAGGTAGGAAAAATGTAGGAAACCTTTTA TGGAACCTTATGTTACTTTCTTATGCTGTCAATTTCAAAATGAAAAGCTTGCAGAGAGAATTTCTTAGAATGGTTGAAGC TGGGTTCCGCCTTGATGTTACTACCTTCAATATTCGAGCTCTGGCCTTTTCTAGGATGTCTCTGTTCTGGGACCTCCACC TTAGCATTGAACACATGAATCATGAAAAGGTCATTCCTGATCTAGTTACTTATGGGTGTGTAGTTGATGCATACCTGGAT AGAAAGCTAGGAAGAAACTTGGACTTTGCCCTAAACAAACTGAACTTGGATGATTCTCCAAGATTGTTAACAGATCCGCT TGTGTTTGAGGCCTTAGGTAAAGGGGACTTTCACATGAGTTCAGAGGCATTTTTTGAATACAAGACACAAAGGCGATGGA CTTACAGGACTTTAATACAAAAATATTTTAAGAAACATTACCGGAGAAACCAGATCTTTTGGAACTACTAAGTAGTGGCC AGATGTTCTGGTCCATTCAATTTCTGGCCAGGTAGTTAACTTGAAACAATGTTTTACTGAATTTGTGGCTCAGCAGAACA AAAAGCTAACTATCTTTCTTTGTTTTTCTTTTGACAAGACCTTGATTCCATACAGAATCCAGTATTATTTTTTGAACAGA ATATAGACATCCAGTATGTAGTTGACTTGGAACATAATTCTACTGTTGGTGTATGCACTTGAGGGTGAAGTGTCAAGTTG GAGACATCTTAAACGCTTTGTTGATAAAGAACATTATCATGTATAGTTGAAGGTGAAAGGAACATCACATACATCCTATT TTGAAGAAACCAGCAGGAACTGATAATTGGTAAGGTTCAATGTTTAACAATTTTCAAGTTAGCGCCTCCTACCAATAGAA GCTTGCTTATTTCTTGGCCCTAAATTTGTTCAGGCATGCATATGTTCATTCTTTATGGATTCTGTAGTTCTCCTATCATT GTTTGATCATCTTATTTTTCCATTAGGGTCGCCAACTAATTTATAAGTTATTGTGACTCTAAATATTAAATTGTTCAAAC AAATTGTATGGGGAAAAGTTCAAAATAGAGTGTGCCCACCTGTGTTTAATCTATCGAATTTTCAACTTTTTTCAAGTGTT TAGTGAATTTTGTAGAAGGTCAATAGGGAAAGTGGAAATGGAAGTATGAAAACTGTCATGGGATATTTGCAGCTGATGAT ATCTTTGGTTAGAGTTAAAGCATTAACAATATCCAGATTACCACACACGTAAGGGCTGTGTTTCTCAGTAATCTGCTGAT AGAAACCTGGTACTTTATTAGATAATGCAAGGAAGAATTTCCTTGATCACAGAAAAGAACTCACACAGCAAATCTTCTCT GGTCTGTACCCTGCCCTTTCCTGAGGCCCCGATTTCCTCTCAAATGCCTAGATAACTTTCCCTCTCCCTCTACTCTTTAT TCATAGGCGAAATGCCTTATTTCTTATCCTTATCTCATCCCAAATAACCTAACTAACTATCTCTCTCACTTACAGTCACT AACAGACACATTACATCTGCCTTTTTTTCTTCAGGTTCATTAGATAACAAGTCTGTGTTATGTGAAAAGCTCATATGCAT GTCTGCATTTTGTCTTTCTTTCCGTATTCCCCTCACTTTTAAAGTACCGTATTTAAGATCCAATCAAGCATTGAAATTGT TGGCTTTTGAGGTCCATAGATGACTATTGGATTTCCTACCTGTTGTTTGTCTTTTCTGATTACATATTTCTATGATTGCT AAATTACATTTATACTTGATTTGACTAGTTGTAGTAGATGTGATATATAGTCAGCAACACATTGATTATCCTCCATTTGC AACGAACGAAGCTTGAAGAGTGCATTTATCTTTTGATATTAGACCTGCACAACAAAGAATAAATGTTATAGAAATTGTTC AATTCACAATACAAGATCAGACGTTCTGATTTGAGTCCTGCACTCTGCAATGCAAACCAGACAGTAAATCGGAGCGTGGA TAAAATGTGACTTCAGTAACCAGAATTGCCTGCAAGCAGTAAAGTCTGCAGCCATAGAAAGTTTAGAATGCGAGTTTGAT CACTACCCGTCCAACTTAGAACAATTTGAGTAGATGCAGCTTATAGATAAAGTTACTGACAAGAGGTGGAGTGCAGCCAT ATAAAGTTTAGAACGCGAGTTTGGTCACTACCTGTCCAACTTAGAACAATTTGAGTAGATGCAGCTTATAGATAAAGTTA CTGACAAGAGGTGGAGTGCAGCCACAGAAAGTTTATTACCCTGCAGGTTCCATCACCTTTTCATGTAATTTGAAATATTT TGTGATAGTAAACTTTGAACTGGCTCATCAATTGAAGCATTGAAAGTTTAATTGTGTGGTTTTGTCACTGCTACTACTCT TTTCTTAAAATACTGGG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0100600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAATACACTCTCTTACACTCCTCTCTTGCCATATTCCCATTCCGCGAAAGAACGATGGCACTGTAGCTCCACAACG CGACAAGGGAATCCGATGGCGGAATGAAAAGAGATTTCTTAGTGGTATGAACAAGTCTTCAGATTGCGCTTCATTCGTCG AAAAAAGGTTGTCTTATCAATCTGATGGGGTTTTTAATGATATGAAGCTTGATGGTTATATGCCTGAGCAATCTACTTTG CCTGCATTGATGTTATATTATGCGGAGAATGGCCTCTTTCCTCAAGCGCAGACTACGTGGGAGCAACTCGTAAATAGTTC TTTTGTGCCGTCTATTCCATTCGTTTCAAGATTGTTTGATGCTTATGGGAAACACAGGAAATTCGATGAAGTGGTCAATA TTCTACATTGTATGAATTTGAGGAATTTCAGTATATTACCTGATGTGTACTCATTGGCTATCTCTTGTCTTGGGAGAGGA GGACAGCTTGAGTTGATGGAAGATGCAGCAAAGGAGATGGTTTCGAGGGGTTTCCCGATGGGTTCTGACACTGGAAATGC TTTCCTTTTGTATTATAGTATTTTTGGTTCTTTGAAAGAAATGGAGAATGCATATGGCCGCCTTAAGAGATCAAGGTTTC TGATAGAGGAGGAAGCGATTCGGGCCATGGCCTCTGCATATCTAAAGGAGATAAAATTCTATGAATTGGGTGAGTTTGTT AGAGATGTGGGTTTAGGTAGGAAAAATGTAGGAAACCTTTTATGGAACCTTATGTTACTTTCTTATGCTGTCAATTTCAA AATGAAAAGCTTGCAGAGAGAATTTCTTAGAATGGTTGAAGCTGGGTTCCGCCTTGATGTTACTACCTTCAATATTCGAG CTCTGGCCTTTTCTAGGATGTCTCTGTTCTGGGACCTCCACCTTAGCATTGAACACATGAATCATGAAAAGGTCATTCCT GATCTAGTTACTTATGGGTGTGTAGTTGATGCATACCTGGATAGAAAGCTAGGAAGAAACTTGGACTTTGCCCTAAACAA ACTGAACTTGGATGATTCTCCAAGATTGTTAACAGATCCGCTTGTGTTTGAGGCCTTAGGTAAAGGGGACTTTCACATGA GTTCAGAGGCATTTTTTGAATACAAGACACAAAGGCGATGGACTTACAGGACTTTAATACAAAAATATTTTAAGAAACAT TACCGGAGAAACCAGATCTTTTGGAACTACTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0100600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEIHSLTLLSCHIPIPRKNDGTVAPQRDKGIRWRNEKRFLSGMNKSSDCASFVEKRLSYQSDGVFNDMKLDGYMPEQSTL PALMLYYAENGLFPQAQTTWEQLVNSSFVPSIPFVSRLFDAYGKHRKFDEVVNILHCMNLRNFSILPDVYSLAISCLGRG GQLELMEDAAKEMVSRGFPMGSDTGNAFLLYYSIFGSLKEMENAYGRLKRSRFLIEEEAIRAMASAYLKEIKFYELGEFV RDVGLGRKNVGNLLWNLMLLSYAVNFKMKSLQREFLRMVEAGFRLDVTTFNIRALAFSRMSLFWDLHLSIEHMNHEKVIP DLVTYGCVVDAYLDRKLGRNLDFALNKLNLDDSPRLLTDPLVFEALGKGDFHMSSEAFFEYKTQRRWTYRTLIQKYFKKH YRRNQIFWNY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47493
22 410 389 1.3E-188 –
PANTHER
PTHR47493:SF1
22 410 389 1.3E-188 –
Gene3D
G3DSA:1.25.40.10
61 243 183 1.1E-18
IPR011990
Pfam
PF01535
118 141 24 0.14
IPR002885
Pfam
PF01535
149 178 30 0.2
IPR002885
TIGRFAM
TIGR00756
149 179 31 8.5E-4
IPR002885
Gene3D
G3DSA:1.25.40.10
247 348 102 5.3E-8
IPR011990

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0100600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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