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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0106700 |
| Transcript ID | LotjaGi2g1v0106700.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G13650.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650; TrEMBL-Plants: tr|K7K6W1|K7K6W1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0106700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:36305690..36309852) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTACGGTCCGCTGTTGCTCATTTTAGATGCTAACTCAGGCACCCATGCCGCCATCGGCTTCGCCCCTCTCTCTTCGT GGCTTCTTCTTCCTATGTCCCAGGTTCAACTCTTTCCCACGAAATTGCAAATTCAAACACCAAAAATTCCTGAAACCTAT TTCTAAAAGTCACAAGGTAATGCTAAATCACAAGTTACTCGTTCCATCTTCATGGTTCTCGTGCTGAAAGTTTTGTTTTT CTCTATGCAGTTACTCAGTGGAAACTTGATATTTGCTGCTTTCAGCAACGCTGCTTTAAACTATGCTCACGGCTACGATG AAGTTCCGGAGAGGGAGAGCGGAGGGGATGGAAGTGAAATTGCTTTCTTGCATCTCATGGAAGAACGTGGGGTTCGTGCC AATTCCCAGACCTATTTGTGGTTGTTAGAGGGGTGTCTGAAATCTGGATCGTTTTCTGATGGTTCGAAGCTTCATGGGAA GATTCTGAAGATGGGTTTTTGTACAGAAGTGGATTTGTGTGATCGTCTTATGGATTTGTACATTTCATTTGGTGATTTGG ATGGTGCAGTCAAGGTTTTCGATGATATGGCTGTTAGACCTTTGTCTTGTTGGAATAAGATTCTGCTTAGGTTTGTTGCA GAGAAATTGACTGGTCACGTTGTGGGTTTGTTTTGGCGAATGATGAAAGAGAATGTGAAACCTGATGAGAAAACTTTTGC AGGGGTTTTGAGGGGTTGTAGTGGTAATGCTATTCCTTTCCACTATGTGGAGCAAATCCATGCCAGGACTATAACTCATG GTTTTGAAAGTAGTCCGTGGATATGTAATCCTCTGATTGATCTCTATTTTAAAAATGGCTTTTCCAACTCTTCTAAGAAG GTATTTGACTATTTACAGGAGAGGGATAGTGTTTCTTGGGTAGCTATGATATCTGGTTTAGGGCAAAGTGGGTGTGAAGA AGAAGCAGTTCTTCTGTTTTGCCAGATGCACGCATCTGGAGTCTGTCCAACCCCTTATATTTTTTCAAGTGTTCTGAGTG CCTGTAAAAATGTAGAATTTTTTGAGCTTGGAGAGCAGCTCCATGGCCTTGTTCAGAAGCAGGGATTCTCATCCGAAACA TATGTTTGCAATGCCCTAGTGACATTTTATTGCCGTTCTGGGAACTTTATAGCTGCAGAGCAAGTTTTTAATGCAATGTC ACAGAGGGATAGAGTTTCATATAACTCACTTATTTCTGGTCTCGCTCAACAAGGATACAGCGACAGAGCTTTCGAGCTGT ATAAGAAAATGCATCTTGATTGCTTGAAGCCTGACTGTGTAACAGTTGCATGTCTTTTGAGCGGATGTGCATCCGCTGGG GTTCCTCTAATAGGAAAACAATTACACTCATATGCATTAAAGGCAGGAATGTCATCAGACAAAATCCTGGAAGGTTCACT GCTTGATCTCTATGTGAAATGCTCAGATATAAAAACTGCCCGTGATTTTTTCCTTGAATCAGAAACTGAAAATGTGGTCC TCTGGAATATGATGCTCGTGGCTTATGGCCAGTTGGACAATCTTAATGAATCATTTAAAATATTTGCTCAGATGCAGATA GATGGAATTTTACCTAATCAATTTACCTATCCTAGTATTTTGAGAACTTGCACTTCTTTCGGAGCTCTTGATCTAGGAGA ACAGATTCATACTCAAGTTGTTAAAACTGGCTTTCAGTTCAATATGTATGTCTCTAGTGTGCTGATTGACATGTATGCAA AACATGGAAAGCTAGATACTGCACTAGAAATCCTTAGAAGACATAAAGAGAATGATGTTGTTTCGTGGACAGCCATGATT GCTGGGTATGCAAAACAGGATAAGTTCCTTGAAGCTCTTAAACTCTTTAAAGAAATGCAAGATCAAGGGATACAATCTGA TAATATAGGATTTGCAAGTGCTATAAGTGCATGTGCAGGTATCCAAGCACTTGATCAAGGACGGCAGATTCACGCTCAGT CATGTGTCGGTGGTTATTCAGATGATCTTTCAATTGGTAATGCACTTGTTAGTCTTTATGCTAGGTGTGGAAAACTACGA GAAGCATACTTTTCTTTTGATAAAATATTTGCTAAAGATAATGTATCATGGAACTCATTGATATCTGGTTTTGCACAAAG TGGACATTGTGAGGAAGCACTGAATCTATTTGCTCAAATGTGTAGAGCTGGACTGGTAATCAATTCATTCACATTTGGTT CCGCAGTTAGTGCTGCTGCTAATGTTACTAATGTTAAACTAGGCAAGCAAATTCATGCCATGATTAAAAAAACTGGTTAT GATTTAGAAACTGAGGTTTCTAATGCTTTGATAACGCTATATGCTAAATGTGGTTTAATTGATGATGCCGAGCGACACTT CTTTGAAATGCCAGATAAAAATGAGGTTTCGTGGAATGCCATGATTACTGGTTATTCCCAACATGGTTGTGGATTTGAAG CACTAAACCTTTTTGAAGATATGAAACGTCTTGGTGTATTGTCAAACCATGTTACCTTTGTGGGAGTTTTATCAGCATGT AGCCATGTGGGTTTGGTGGATGAGGGAATTAGCTACTTTCAATCAATGAGTGAAGTTCACTGTTTGGTACCGAAACCTGA ACATTATGCATGTGTTGTGGATCTTCTAGGACGGTCTGGTCTTTTAAGCCGTGCAAGGAAATTCGTTAAGGAGATGCCAA TTCAACCAGATGCAATGGTATGGAGGACCCTTTTAAGTGCTTGTACTGTTCATAAGAATATGGACATTGGAGAGTTTGCT GCTAGTCATCTTTTGGAACTGGAACCCAAAGATTCAGCAACCTATGTTCTGCTTTCAAATATGTATGCAGTTACTAGGAG ATGGGGTTGTAGGGATCGGACAAGGAAAATTATGAAAGATAGAGGTGTTAAGAAAGAGCCTGGTCGTAGCTGGATTGAGG TTGATAATTCTGTTCATGCATTTTTCGCTGGTGATCAGAATCACCCCCATGCAGATATGATATATGACTATCTCGGAGAG CTGAATGTTCGGGCAGCTGAAAATGGTTATGTTCCCCAGTGCAATAGCCTTTGGAATGATGTAGAGCGGCGTAAAAAGGA TCCAAAAGAAATTATTCACAGTGAGAAACTTGCAATTGCTTTTGGTTTGCTTAGTTTGCCTAGCTCCACTCCTGTCCATG TTTTTAAAAATCTTCGTGTTTGTGGGGATTGCCACAACTGGATTAAGCATGTCTCTAAGATATCAGATCGAGTGATCATA GTGAGAGATTCATACCGCTTTCATCATTTCACAGTTGGTGGTTGTTCTTGTAAAGATTATTGGTAAGATGGTGAAGGAAT GAATCCCTCTAGGCTTGTGTGGGGTGTGGATGGCGAGCGAGCATTGCAGCTTGCAGATTGGGTTTTATTGGTCACCCATG TCTGTGGTAAGAACTCTAACCTGAAGTAATTGGATAGATTTTTCGCTAGGGTTCACTTGATGTTGCTTATGCAATACTGG TTTTGTAGGTGGTTAGTATGGTCTACCTTTTCTTCTTCTGAATCAGGTTCTTGAGTGATTTAGTAGGTTCTCTAATATTG AAAATTTAACATTGTGCAGAAAGTATCATGAGTCCATGTTTCTGTATTATCCTTTTCAGGTGAACAATAATAGCTGAAGA ATTTCATGGATTCCTCTGCATGCATTATTTTTGACACATACATCATGCTCAAGTTATTGGCGATGTTTGGTTTTCCCCAG AATACTGATTTTCTGTCTCTTTCATGGATCATTATCTATACTCAAAATGGAGGACTTTGCTGGTTTGGAGGTATAGCTGT CCATTATTGTAGTAGTAGATTCTGCTTAAATCGTCTGCTTTTAAATTCCCTGGTCTGAAACTGTAAGACTTCCATATACT TCTCCTTTGATACTTCCAAGTCAAATCGGTGCTAATGGTAGACCAGGAAAAGTTGATTTCATGTGAATTGTTTTATGACA ACAAATAAATTAATTAACTTCTTTCACTGCACAGCACTGCCCTGGCATATTCTGCATTATTGTCATTTCCTGTTTTGACT GCAGGTTATTTTAATTTAAGCACAAAATGAGCTAATATATACACTGAGAAGTAGAGAGAGTGAGGTAGTTGAGAGAATGA GAG
CDS sequence (LotjaGi2g1v0106700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAACTCAGGCACCCATGCCGCCATCGGCTTCGCCCCTCTCTCTTCGTGGCTTCTTCTTCCTATGTCCCAGGTTCAA CTCTTTCCCACGAAATTGCAAATTCAAACACCAAAAATTCCTGAAACCTATTTCTAAAAGTCACAAGTTACTCAGTGGAA ACTTGATATTTGCTGCTTTCAGCAACGCTGCTTTAAACTATGCTCACGGCTACGATGAAGTTCCGGAGAGGGAGAGCGGA GGGGATGGAAGTGAAATTGCTTTCTTGCATCTCATGGAAGAACGTGGGGTTCGTGCCAATTCCCAGACCTATTTGTGGTT GTTAGAGGGGTGTCTGAAATCTGGATCGTTTTCTGATGGTTCGAAGCTTCATGGGAAGATTCTGAAGATGGGTTTTTGTA CAGAAGTGGATTTGTGTGATCGTCTTATGGATTTGTACATTTCATTTGGTGATTTGGATGGTGCAGTCAAGGTTTTCGAT GATATGGCTGTTAGACCTTTGTCTTGTTGGAATAAGATTCTGCTTAGGTTTGTTGCAGAGAAATTGACTGGTCACGTTGT GGGTTTGTTTTGGCGAATGATGAAAGAGAATGTGAAACCTGATGAGAAAACTTTTGCAGGGGTTTTGAGGGGTTGTAGTG GTAATGCTATTCCTTTCCACTATGTGGAGCAAATCCATGCCAGGACTATAACTCATGGTTTTGAAAGTAGTCCGTGGATA TGTAATCCTCTGATTGATCTCTATTTTAAAAATGGCTTTTCCAACTCTTCTAAGAAGGTATTTGACTATTTACAGGAGAG GGATAGTGTTTCTTGGGTAGCTATGATATCTGGTTTAGGGCAAAGTGGGTGTGAAGAAGAAGCAGTTCTTCTGTTTTGCC AGATGCACGCATCTGGAGTCTGTCCAACCCCTTATATTTTTTCAAGTGTTCTGAGTGCCTGTAAAAATGTAGAATTTTTT GAGCTTGGAGAGCAGCTCCATGGCCTTGTTCAGAAGCAGGGATTCTCATCCGAAACATATGTTTGCAATGCCCTAGTGAC ATTTTATTGCCGTTCTGGGAACTTTATAGCTGCAGAGCAAGTTTTTAATGCAATGTCACAGAGGGATAGAGTTTCATATA ACTCACTTATTTCTGGTCTCGCTCAACAAGGATACAGCGACAGAGCTTTCGAGCTGTATAAGAAAATGCATCTTGATTGC TTGAAGCCTGACTGTGTAACAGTTGCATGTCTTTTGAGCGGATGTGCATCCGCTGGGGTTCCTCTAATAGGAAAACAATT ACACTCATATGCATTAAAGGCAGGAATGTCATCAGACAAAATCCTGGAAGGTTCACTGCTTGATCTCTATGTGAAATGCT CAGATATAAAAACTGCCCGTGATTTTTTCCTTGAATCAGAAACTGAAAATGTGGTCCTCTGGAATATGATGCTCGTGGCT TATGGCCAGTTGGACAATCTTAATGAATCATTTAAAATATTTGCTCAGATGCAGATAGATGGAATTTTACCTAATCAATT TACCTATCCTAGTATTTTGAGAACTTGCACTTCTTTCGGAGCTCTTGATCTAGGAGAACAGATTCATACTCAAGTTGTTA AAACTGGCTTTCAGTTCAATATGTATGTCTCTAGTGTGCTGATTGACATGTATGCAAAACATGGAAAGCTAGATACTGCA CTAGAAATCCTTAGAAGACATAAAGAGAATGATGTTGTTTCGTGGACAGCCATGATTGCTGGGTATGCAAAACAGGATAA GTTCCTTGAAGCTCTTAAACTCTTTAAAGAAATGCAAGATCAAGGGATACAATCTGATAATATAGGATTTGCAAGTGCTA TAAGTGCATGTGCAGGTATCCAAGCACTTGATCAAGGACGGCAGATTCACGCTCAGTCATGTGTCGGTGGTTATTCAGAT GATCTTTCAATTGGTAATGCACTTGTTAGTCTTTATGCTAGGTGTGGAAAACTACGAGAAGCATACTTTTCTTTTGATAA AATATTTGCTAAAGATAATGTATCATGGAACTCATTGATATCTGGTTTTGCACAAAGTGGACATTGTGAGGAAGCACTGA ATCTATTTGCTCAAATGTGTAGAGCTGGACTGGTAATCAATTCATTCACATTTGGTTCCGCAGTTAGTGCTGCTGCTAAT GTTACTAATGTTAAACTAGGCAAGCAAATTCATGCCATGATTAAAAAAACTGGTTATGATTTAGAAACTGAGGTTTCTAA TGCTTTGATAACGCTATATGCTAAATGTGGTTTAATTGATGATGCCGAGCGACACTTCTTTGAAATGCCAGATAAAAATG AGGTTTCGTGGAATGCCATGATTACTGGTTATTCCCAACATGGTTGTGGATTTGAAGCACTAAACCTTTTTGAAGATATG AAACGTCTTGGTGTATTGTCAAACCATGTTACCTTTGTGGGAGTTTTATCAGCATGTAGCCATGTGGGTTTGGTGGATGA GGGAATTAGCTACTTTCAATCAATGAGTGAAGTTCACTGTTTGGTACCGAAACCTGAACATTATGCATGTGTTGTGGATC TTCTAGGACGGTCTGGTCTTTTAAGCCGTGCAAGGAAATTCGTTAAGGAGATGCCAATTCAACCAGATGCAATGGTATGG AGGACCCTTTTAAGTGCTTGTACTGTTCATAAGAATATGGACATTGGAGAGTTTGCTGCTAGTCATCTTTTGGAACTGGA ACCCAAAGATTCAGCAACCTATGTTCTGCTTTCAAATATGTATGCAGTTACTAGGAGATGGGGTTGTAGGGATCGGACAA GGAAAATTATGAAAGATAGAGGTGTTAAGAAAGAGCCTGGTCGTAGCTGGATTGAGGTTGATAATTCTGTTCATGCATTT TTCGCTGGTGATCAGAATCACCCCCATGCAGATATGATATATGACTATCTCGGAGAGCTGAATGTTCGGGCAGCTGAAAA TGGTTATGTTCCCCAGTGCAATAGCCTTTGGAATGATGTAGAGCGGCGTAAAAAGGATCCAAAAGAAATTATTCACAGTG AGAAACTTGCAATTGCTTTTGGTTTGCTTAGTTTGCCTAGCTCCACTCCTGTCCATGTTTTTAAAAATCTTCGTGTTTGT GGGGATTGCCACAACTGGATTAAGCATGTCTCTAAGATATCAGATCGAGTGATCATAGTGAGAGATTCATACCGCTTTCA TCATTTCACAGTTGGTGGTTGTTCTTGTAAAGATTATTGGTAA
Protein sequence (LotjaGi2g1v0106700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTQAPMPPSASPLSLRGFFFLCPRFNSFPRNCKFKHQKFLKPISKSHKLLSGNLIFAAFSNAALNYAHGYDEVPERESG GDGSEIAFLHLMEERGVRANSQTYLWLLEGCLKSGSFSDGSKLHGKILKMGFCTEVDLCDRLMDLYISFGDLDGAVKVFD DMAVRPLSCWNKILLRFVAEKLTGHVVGLFWRMMKENVKPDEKTFAGVLRGCSGNAIPFHYVEQIHARTITHGFESSPWI CNPLIDLYFKNGFSNSSKKVFDYLQERDSVSWVAMISGLGQSGCEEEAVLLFCQMHASGVCPTPYIFSSVLSACKNVEFF ELGEQLHGLVQKQGFSSETYVCNALVTFYCRSGNFIAAEQVFNAMSQRDRVSYNSLISGLAQQGYSDRAFELYKKMHLDC LKPDCVTVACLLSGCASAGVPLIGKQLHSYALKAGMSSDKILEGSLLDLYVKCSDIKTARDFFLESETENVVLWNMMLVA YGQLDNLNESFKIFAQMQIDGILPNQFTYPSILRTCTSFGALDLGEQIHTQVVKTGFQFNMYVSSVLIDMYAKHGKLDTA LEILRRHKENDVVSWTAMIAGYAKQDKFLEALKLFKEMQDQGIQSDNIGFASAISACAGIQALDQGRQIHAQSCVGGYSD DLSIGNALVSLYARCGKLREAYFSFDKIFAKDNVSWNSLISGFAQSGHCEEALNLFAQMCRAGLVINSFTFGSAVSAAAN VTNVKLGKQIHAMIKKTGYDLETEVSNALITLYAKCGLIDDAERHFFEMPDKNEVSWNAMITGYSQHGCGFEALNLFEDM KRLGVLSNHVTFVGVLSACSHVGLVDEGISYFQSMSEVHCLVPKPEHYACVVDLLGRSGLLSRARKFVKEMPIQPDAMVW RTLLSACTVHKNMDIGEFAASHLLELEPKDSATYVLLSNMYAVTRRWGCRDRTRKIMKDRGVKKEPGRSWIEVDNSVHAF FAGDQNHPHADMIYDYLGELNVRAAENGYVPQCNSLWNDVERRKKDPKEIIHSEKLAIAFGLLSLPSSTPVHVFKNLRVC GDCHNWIKHVSKISDRVIIVRDSYRFHHFTVGGCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 85 | 217 | 133 | 1.3E-15 | ||
| PANTHER | 93 | 214 | 122 | 2.5E-169 | – | |
| ProSiteProfiles | 100 | 134 | 35 | 8.331 | ||
| ProSiteProfiles | 135 | 169 | 35 | 6.917 | ||
| Pfam | 142 | 162 | 21 | 0.43 | ||
| ProSiteProfiles | 201 | 236 | 36 | 5.459 | ||
| Gene3D | 219 | 318 | 100 | 9.0E-16 | ||
| PANTHER | 223 | 325 | 103 | 2.5E-169 | – | |
| ProSiteProfiles | 237 | 267 | 31 | 6.665 | ||
| ProSiteProfiles | 268 | 302 | 35 | 11.159 | ||
| TIGRFAM | 270 | 303 | 34 | 5.3E-7 | ||
| Pfam | 270 | 300 | 31 | 1.1E-5 | ||
| ProSiteProfiles | 303 | 337 | 35 | 6.588 | ||
| Gene3D | 319 | 422 | 104 | 8.5E-23 | ||
| PANTHER | 323 | 420 | 98 | 2.5E-169 | – | |
| ProSiteProfiles | 338 | 368 | 31 | 8.67 | ||
| TIGRFAM | 340 | 368 | 29 | 2.6E-4 | ||
| Pfam | 341 | 368 | 28 | 0.0082 | ||
| ProSiteProfiles | 369 | 403 | 35 | 11.4 | ||
| Pfam | 369 | 416 | 48 | 5.2E-10 | ||
| TIGRFAM | 371 | 405 | 35 | 1.4E-7 | ||
| ProSiteProfiles | 404 | 438 | 35 | 6.292 | ||
| Gene3D | 423 | 568 | 146 | 1.3E-23 | ||
| PANTHER | 424 | 532 | 109 | 2.5E-169 | – | |
| ProSiteProfiles | 439 | 469 | 31 | 5.031 | ||
| Pfam | 470 | 516 | 47 | 4.6E-8 | ||
| ProSiteProfiles | 470 | 504 | 35 | 10.534 | ||
| TIGRFAM | 472 | 505 | 34 | 7.0E-5 | ||
| ProSiteProfiles | 505 | 539 | 35 | 7.585 | ||
| PANTHER | 523 | 630 | 108 | 2.5E-169 | – | |
| ProSiteProfiles | 540 | 570 | 31 | 7.98 | ||
| Pfam | 545 | 566 | 22 | 0.02 | ||
| Gene3D | 569 | 633 | 65 | 2.0E-7 | ||
| ProSiteProfiles | 571 | 605 | 35 | 12.529 | ||
| Pfam | 571 | 618 | 48 | 8.3E-11 | ||
| TIGRFAM | 573 | 606 | 34 | 1.5E-8 | ||
| PANTHER | 610 | 736 | 127 | 2.5E-169 | – | |
| ProSiteProfiles | 641 | 671 | 31 | 6.906 | ||
| Pfam | 646 | 667 | 22 | 1.3 | ||
| Gene3D | 646 | 775 | 130 | 1.8E-24 | ||
| Pfam | 671 | 714 | 44 | 3.8E-10 | ||
| ProSiteProfiles | 672 | 706 | 35 | 12.068 | ||
| TIGRFAM | 674 | 707 | 34 | 1.3E-7 | ||
| ProSiteProfiles | 707 | 741 | 35 | 5.974 | ||
| PANTHER | 715 | 938 | 224 | 2.5E-169 | – | |
| ProSiteProfiles | 742 | 772 | 31 | 7.772 | ||
| Pfam | 772 | 820 | 49 | 9.2E-11 | ||
| ProSiteProfiles | 773 | 807 | 35 | 11.345 | ||
| TIGRFAM | 775 | 806 | 32 | 3.7E-6 | ||
| Gene3D | 792 | 975 | 184 | 1.7E-22 | ||
| ProSiteProfiles | 808 | 842 | 35 | 7.848 | ||
| ProSiteProfiles | 844 | 874 | 31 | 6.434 | ||
| ProSiteProfiles | 910 | 944 | 35 | 6.369 | ||
| Pfam | 946 | 1069 | 124 | 1.5E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0106700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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