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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0106700 |
| Transcript ID | LotjaGi2g1v0106700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G13650.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650; TrEMBL-Plants: tr|K7K6W1|K7K6W1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0106700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:36305755..36309035) extracted from Lotus japonicus Gifu genome v1.2.
CCCCTCTCTCTTCGTGGCTTCTTCTTCCTATGTCCCAGGTTCAACTCTTTCCCACGAAATTGCAAATTCAAACACCAAAA ATTCCTGAAACCTATTTCTAAAAGTCACAAGGTAATGCTAAATCACAAGTTACTCGTTCCATCTTCATGGTTCTCGTGCT GAAAGTTTTGTTTTTCTCTATGCAGTTACTCAGTGGAAACTTGATATTTGCTGCTTTCAGCAACGCTGCTTTAAACTATG CTCACGGCTACGATGAAGTTCCGGAGAGGGAGAGCGGAGGGGATGGAAGTGAAATTGCTTTCTTGCATCTCATGGAAGAA CGTGGGGTTCGTGCCAATTCCCAGACCTATTTGTGGTTGTTAGAGGGGTGTCTGAAATCTGGATCGTTTTCTGATGGTTC GAAGCTTCATGGGAAGATTCTGAAGATGGGTTTTTGTACAGAAGTGGATTTGTGTGATCGTCTTATGGATTTGTACATTT CATTTGGTGATTTGGATGGTGCAGTCAAGGTTTTCGATGATATGGCTGTTAGACCTTTGTCTTGTTGGAATAAGATTCTG CTTAGGTTTGTTGCAGAGAAATTGACTGGTCACGTTGTGGGTTTGTTTTGGCGAATGATGAAAGAGAATGTGAAACCTGA TGAGAAAACTTTTGCAGGGGTTTTGAGGGGTTGTAGTGGTAATGCTATTCCTTTCCACTATGTGGAGCAAATCCATGCCA GGACTATAACTCATGGTTTTGAAAGTAGTCCGTGGATATGTAATCCTCTGATTGATCTCTATTTTAAAAATGGCTTTTCC AACTCTTCTAAGAAGGTATTTGACTATTTACAGGAGAGGGATAGTGTTTCTTGGGTAGCTATGATATCTGGTTTAGGGCA AAGTGGGTGTGAAGAAGAAGCAGTTCTTCTGTTTTGCCAGATGCACGCATCTGGAGTCTGTCCAACCCCTTATATTTTTT CAAGTGTTCTGAGTGCCTGTAAAAATGTAGAATTTTTTGAGCTTGGAGAGCAGCTCCATGGCCTTGTTCAGAAGCAGGGA TTCTCATCCGAAACATATGTTTGCAATGCCCTAGTGACATTTTATTGCCGTTCTGGGAACTTTATAGCTGCAGAGCAAGT TTTTAATGCAATGTCACAGAGGGATAGAGTTTCATATAACTCACTTATTTCTGGTCTCGCTCAACAAGGATACAGCGACA GAGCTTTCGAGCTGTATAAGAAAATGCATCTTGATTGCTTGAAGCCTGACTGTGTAACAGTTGCATGTCTTTTGAGCGGA TGTGCATCCGCTGGGGTTCCTCTAATAGGAAAACAATTACACTCATATGCATTAAAGGCAGGAATGTCATCAGACAAAAT CCTGGAAGGTTCACTGCTTGATCTCTATGTGAAATGCTCAGATATAAAAACTGCCCGTGATTTTTTCCTTGAATCAGAAA CTGAAAATGTGGTCCTCTGGAATATGATGCTCGTGGCTTATGGCCAGTTGGACAATCTTAATGAATCATTTAAAATATTT GCTCAGATGCAGATAGATGGAATTTTACCTAATCAATTTACCTATCCTAGTATTTTGAGAACTTGCACTTCTTTCGGAGC TCTTGATCTAGGAGAACAGATTCATACTCAAGTTGTTAAAACTGGCTTTCAGTTCAATATGTATGTCTCTAGTGTGCTGA TTGACATGTATGCAAAACATGGAAAGCTAGATACTGCACTAGAAATCCTTAGAAGACATAAAGAGAATGATGTTGTTTCG TGGACAGCCATGATTGCTGGGTATGCAAAACAGGATAAGTTCCTTGAAGCTCTTAAACTCTTTAAAGAAATGCAAGATCA AGGGATACAATCTGATAATATAGGATTTGCAAGTGCTATAAGTGCATGTGCAGGTATCCAAGCACTTGATCAAGGACGGC AGATTCACGCTCAGTCATGTGTCGGTGGTTATTCAGATGATCTTTCAATTGGTAATGCACTTGTTAGTCTTTATGCTAGG TGTGGAAAACTACGAGAAGCATACTTTTCTTTTGATAAAATATTTGCTAAAGATAATGTATCATGGAACTCATTGATATC TGGTTTTGCACAAAGTGGACATTGTGAGGAAGCACTGAATCTATTTGCTCAAATGTGTAGAGCTGGACTGGTAATCAATT CATTCACATTTGGTTCCGCAGTTAGTGCTGCTGCTAATGTTACTAATGTTAAACTAGGCAAGCAAATTCATGCCATGATT AAAAAAACTGGTTATGATTTAGAAACTGAGGTTTCTAATGCTTTGATAACGCTATATGCTAAATGTGGTTTAATTGATGA TGCCGAGCGACACTTCTTTGAAATGCCAGATAAAAATGAGGTTTCGTGGAATGCCATGATTACTGGTTATTCCCAACATG GTTGTGGATTTGAAGCACTAAACCTTTTTGAAGATATGAAACGTCTTGGTGTATTGTCAAACCATGTTACCTTTGTGGGA GTTTTATCAGCATGTAGCCATGTGGGTTTGGTGGATGAGGGAATTAGCTACTTTCAATCAATGAGTGAAGTTCACTGTTT GGTACCGAAACCTGAACATTATGCATGTGTTGTGGATCTTCTAGGACGGTCTGGTCTTTTAAGCCGTGCAAGGAAATTCG TTAAGGAGATGCCAATTCAACCAGATGCAATGGTATGGAGGACCCTTTTAAGTGCTTGTACTGTTCATAAGAATATGGAC ATTGGAGAGTTTGCTGCTAGTCATCTTTTGGAACTGGAACCCAAAGATTCAGCAACCTATGTTCTGCTTTCAAATATGTA TGCAGTTACTAGGAGATGGGGTTGTAGGGATCGGACAAGGAAAATTATGAAAGATAGAGGTGTTAAGAAAGAGCCTGGTC GTAGCTGGATTGAGGTTGATAATTCTGTTCATGCATTTTTCGCTGGTGATCAGAATCACCCCCATGCAGATATGATATAT GACTATCTCGGAGAGCTGAATGTTCGGGCAGCTGAAAATGGTTATGTTCCCCAGTGCAATAGCCTTTGGAATGATGTAGA GCGGCGTAAAAAGGATCCAAAAGAAATTATTCACAGTGAGAAACTTGCAATTGCTTTTGGTTTGCTTAGTTTGCCTAGCT CCACTCCTGTCCATGTTTTTAAAAATCTTCGTGTTTGTGGGGATTGCCACAACTGGATTAAGCATGTCTCTAAGATATCA GATCGAGTGATCATAGTGAGAGATTCATACCGCTTTCATCATTTCACAGTTGGTGGTTGTTCTTGTAAAGATTATTGGTA A
CDS sequence (LotjaGi2g1v0106700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAACGTGGGGTTCGTGCCAATTCCCAGACCTATTTGTGGTTGTTAGAGGGGTGTCTGAAATCTGGATCGTTTTC TGATGGTTCGAAGCTTCATGGGAAGATTCTGAAGATGGGTTTTTGTACAGAAGTGGATTTGTGTGATCGTCTTATGGATT TGTACATTTCATTTGGTGATTTGGATGGTGCAGTCAAGGTTTTCGATGATATGGCTGTTAGACCTTTGTCTTGTTGGAAT AAGATTCTGCTTAGGTTTGTTGCAGAGAAATTGACTGGTCACGTTGTGGGTTTGTTTTGGCGAATGATGAAAGAGAATGT GAAACCTGATGAGAAAACTTTTGCAGGGGTTTTGAGGGGTTGTAGTGGTAATGCTATTCCTTTCCACTATGTGGAGCAAA TCCATGCCAGGACTATAACTCATGGTTTTGAAAGTAGTCCGTGGATATGTAATCCTCTGATTGATCTCTATTTTAAAAAT GGCTTTTCCAACTCTTCTAAGAAGGTATTTGACTATTTACAGGAGAGGGATAGTGTTTCTTGGGTAGCTATGATATCTGG TTTAGGGCAAAGTGGGTGTGAAGAAGAAGCAGTTCTTCTGTTTTGCCAGATGCACGCATCTGGAGTCTGTCCAACCCCTT ATATTTTTTCAAGTGTTCTGAGTGCCTGTAAAAATGTAGAATTTTTTGAGCTTGGAGAGCAGCTCCATGGCCTTGTTCAG AAGCAGGGATTCTCATCCGAAACATATGTTTGCAATGCCCTAGTGACATTTTATTGCCGTTCTGGGAACTTTATAGCTGC AGAGCAAGTTTTTAATGCAATGTCACAGAGGGATAGAGTTTCATATAACTCACTTATTTCTGGTCTCGCTCAACAAGGAT ACAGCGACAGAGCTTTCGAGCTGTATAAGAAAATGCATCTTGATTGCTTGAAGCCTGACTGTGTAACAGTTGCATGTCTT TTGAGCGGATGTGCATCCGCTGGGGTTCCTCTAATAGGAAAACAATTACACTCATATGCATTAAAGGCAGGAATGTCATC AGACAAAATCCTGGAAGGTTCACTGCTTGATCTCTATGTGAAATGCTCAGATATAAAAACTGCCCGTGATTTTTTCCTTG AATCAGAAACTGAAAATGTGGTCCTCTGGAATATGATGCTCGTGGCTTATGGCCAGTTGGACAATCTTAATGAATCATTT AAAATATTTGCTCAGATGCAGATAGATGGAATTTTACCTAATCAATTTACCTATCCTAGTATTTTGAGAACTTGCACTTC TTTCGGAGCTCTTGATCTAGGAGAACAGATTCATACTCAAGTTGTTAAAACTGGCTTTCAGTTCAATATGTATGTCTCTA GTGTGCTGATTGACATGTATGCAAAACATGGAAAGCTAGATACTGCACTAGAAATCCTTAGAAGACATAAAGAGAATGAT GTTGTTTCGTGGACAGCCATGATTGCTGGGTATGCAAAACAGGATAAGTTCCTTGAAGCTCTTAAACTCTTTAAAGAAAT GCAAGATCAAGGGATACAATCTGATAATATAGGATTTGCAAGTGCTATAAGTGCATGTGCAGGTATCCAAGCACTTGATC AAGGACGGCAGATTCACGCTCAGTCATGTGTCGGTGGTTATTCAGATGATCTTTCAATTGGTAATGCACTTGTTAGTCTT TATGCTAGGTGTGGAAAACTACGAGAAGCATACTTTTCTTTTGATAAAATATTTGCTAAAGATAATGTATCATGGAACTC ATTGATATCTGGTTTTGCACAAAGTGGACATTGTGAGGAAGCACTGAATCTATTTGCTCAAATGTGTAGAGCTGGACTGG TAATCAATTCATTCACATTTGGTTCCGCAGTTAGTGCTGCTGCTAATGTTACTAATGTTAAACTAGGCAAGCAAATTCAT GCCATGATTAAAAAAACTGGTTATGATTTAGAAACTGAGGTTTCTAATGCTTTGATAACGCTATATGCTAAATGTGGTTT AATTGATGATGCCGAGCGACACTTCTTTGAAATGCCAGATAAAAATGAGGTTTCGTGGAATGCCATGATTACTGGTTATT CCCAACATGGTTGTGGATTTGAAGCACTAAACCTTTTTGAAGATATGAAACGTCTTGGTGTATTGTCAAACCATGTTACC TTTGTGGGAGTTTTATCAGCATGTAGCCATGTGGGTTTGGTGGATGAGGGAATTAGCTACTTTCAATCAATGAGTGAAGT TCACTGTTTGGTACCGAAACCTGAACATTATGCATGTGTTGTGGATCTTCTAGGACGGTCTGGTCTTTTAAGCCGTGCAA GGAAATTCGTTAAGGAGATGCCAATTCAACCAGATGCAATGGTATGGAGGACCCTTTTAAGTGCTTGTACTGTTCATAAG AATATGGACATTGGAGAGTTTGCTGCTAGTCATCTTTTGGAACTGGAACCCAAAGATTCAGCAACCTATGTTCTGCTTTC AAATATGTATGCAGTTACTAGGAGATGGGGTTGTAGGGATCGGACAAGGAAAATTATGAAAGATAGAGGTGTTAAGAAAG AGCCTGGTCGTAGCTGGATTGAGGTTGATAATTCTGTTCATGCATTTTTCGCTGGTGATCAGAATCACCCCCATGCAGAT ATGATATATGACTATCTCGGAGAGCTGAATGTTCGGGCAGCTGAAAATGGTTATGTTCCCCAGTGCAATAGCCTTTGGAA TGATGTAGAGCGGCGTAAAAAGGATCCAAAAGAAATTATTCACAGTGAGAAACTTGCAATTGCTTTTGGTTTGCTTAGTT TGCCTAGCTCCACTCCTGTCCATGTTTTTAAAAATCTTCGTGTTTGTGGGGATTGCCACAACTGGATTAAGCATGTCTCT AAGATATCAGATCGAGTGATCATAGTGAGAGATTCATACCGCTTTCATCATTTCACAGTTGGTGGTTGTTCTTGTAAAGA TTATTGGTAA
Protein sequence (LotjaGi2g1v0106700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEERGVRANSQTYLWLLEGCLKSGSFSDGSKLHGKILKMGFCTEVDLCDRLMDLYISFGDLDGAVKVFDDMAVRPLSCWN KILLRFVAEKLTGHVVGLFWRMMKENVKPDEKTFAGVLRGCSGNAIPFHYVEQIHARTITHGFESSPWICNPLIDLYFKN GFSNSSKKVFDYLQERDSVSWVAMISGLGQSGCEEEAVLLFCQMHASGVCPTPYIFSSVLSACKNVEFFELGEQLHGLVQ KQGFSSETYVCNALVTFYCRSGNFIAAEQVFNAMSQRDRVSYNSLISGLAQQGYSDRAFELYKKMHLDCLKPDCVTVACL LSGCASAGVPLIGKQLHSYALKAGMSSDKILEGSLLDLYVKCSDIKTARDFFLESETENVVLWNMMLVAYGQLDNLNESF KIFAQMQIDGILPNQFTYPSILRTCTSFGALDLGEQIHTQVVKTGFQFNMYVSSVLIDMYAKHGKLDTALEILRRHKEND VVSWTAMIAGYAKQDKFLEALKLFKEMQDQGIQSDNIGFASAISACAGIQALDQGRQIHAQSCVGGYSDDLSIGNALVSL YARCGKLREAYFSFDKIFAKDNVSWNSLISGFAQSGHCEEALNLFAQMCRAGLVINSFTFGSAVSAAANVTNVKLGKQIH AMIKKTGYDLETEVSNALITLYAKCGLIDDAERHFFEMPDKNEVSWNAMITGYSQHGCGFEALNLFEDMKRLGVLSNHVT FVGVLSACSHVGLVDEGISYFQSMSEVHCLVPKPEHYACVVDLLGRSGLLSRARKFVKEMPIQPDAMVWRTLLSACTVHK NMDIGEFAASHLLELEPKDSATYVLLSNMYAVTRRWGCRDRTRKIMKDRGVKKEPGRSWIEVDNSVHAFFAGDQNHPHAD MIYDYLGELNVRAAENGYVPQCNSLWNDVERRKKDPKEIIHSEKLAIAFGLLSLPSSTPVHVFKNLRVCGDCHNWIKHVS KISDRVIIVRDSYRFHHFTVGGCSCKDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 126 | 126 | 7.8E-15 | ||
| ProSiteProfiles | 9 | 43 | 35 | 8.331 | ||
| PANTHER | 13 | 123 | 111 | 1.3E-168 | – | |
| ProSiteProfiles | 44 | 78 | 35 | 6.917 | ||
| Pfam | 51 | 71 | 21 | 0.39 | ||
| ProSiteProfiles | 110 | 145 | 36 | 5.459 | ||
| Gene3D | 128 | 228 | 101 | 8.0E-16 | ||
| PANTHER | 132 | 234 | 103 | 1.3E-168 | – | |
| ProSiteProfiles | 146 | 176 | 31 | 6.665 | ||
| ProSiteProfiles | 177 | 211 | 35 | 11.159 | ||
| TIGRFAM | 179 | 212 | 34 | 4.8E-7 | ||
| Pfam | 179 | 209 | 31 | 1.0E-5 | ||
| ProSiteProfiles | 212 | 246 | 35 | 6.588 | ||
| Gene3D | 229 | 333 | 105 | 7.7E-23 | ||
| PANTHER | 231 | 328 | 98 | 1.3E-168 | – | |
| ProSiteProfiles | 247 | 277 | 31 | 8.67 | ||
| TIGRFAM | 249 | 277 | 29 | 2.4E-4 | ||
| Pfam | 250 | 277 | 28 | 0.0074 | ||
| Pfam | 278 | 325 | 48 | 4.7E-10 | ||
| ProSiteProfiles | 278 | 312 | 35 | 11.4 | ||
| TIGRFAM | 280 | 314 | 35 | 1.2E-7 | ||
| ProSiteProfiles | 313 | 347 | 35 | 6.292 | ||
| PANTHER | 332 | 441 | 110 | 1.3E-168 | – | |
| Gene3D | 334 | 480 | 147 | 1.2E-23 | ||
| ProSiteProfiles | 348 | 378 | 31 | 5.031 | ||
| ProSiteProfiles | 379 | 413 | 35 | 10.534 | ||
| Pfam | 379 | 425 | 47 | 4.2E-8 | ||
| TIGRFAM | 381 | 414 | 34 | 6.3E-5 | ||
| ProSiteProfiles | 414 | 448 | 35 | 7.585 | ||
| PANTHER | 432 | 539 | 108 | 1.3E-168 | – | |
| ProSiteProfiles | 449 | 479 | 31 | 7.98 | ||
| Pfam | 454 | 475 | 22 | 0.018 | ||
| Pfam | 480 | 527 | 48 | 7.5E-11 | ||
| ProSiteProfiles | 480 | 514 | 35 | 12.529 | ||
| TIGRFAM | 482 | 515 | 34 | 1.3E-8 | ||
| PANTHER | 519 | 642 | 124 | 1.3E-168 | – | |
| Gene3D | 529 | 644 | 116 | 1.7E-19 | ||
| ProSiteProfiles | 550 | 580 | 31 | 6.906 | ||
| Pfam | 555 | 576 | 22 | 1.1 | ||
| Pfam | 580 | 623 | 44 | 3.4E-10 | ||
| ProSiteProfiles | 581 | 615 | 35 | 12.068 | ||
| TIGRFAM | 583 | 616 | 34 | 1.1E-7 | ||
| ProSiteProfiles | 616 | 650 | 35 | 5.974 | ||
| PANTHER | 624 | 847 | 224 | 1.3E-168 | – | |
| ProSiteProfiles | 651 | 681 | 31 | 7.772 | ||
| Gene3D | 656 | 873 | 218 | 1.8E-36 | ||
| Pfam | 681 | 729 | 49 | 8.3E-11 | ||
| ProSiteProfiles | 682 | 716 | 35 | 11.345 | ||
| TIGRFAM | 684 | 715 | 32 | 3.3E-6 | ||
| ProSiteProfiles | 717 | 751 | 35 | 7.848 | ||
| ProSiteProfiles | 753 | 783 | 31 | 6.434 | ||
| ProSiteProfiles | 819 | 853 | 35 | 6.369 | ||
| Pfam | 855 | 978 | 124 | 1.3E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0106700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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