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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0118000 |
| Transcript ID | LotjaGi2g1v0118000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:43238564..43245884) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAATTTGACCTTATACGTGAGAGATCGAGACGACCAGAAACATATTTAACCCTAATGTTATTTTAGTTTTAGTATGT AACACAAGTGGCATGCTCGTTAGTAGAAATTAAAATATATACAGTGTGTGCAAAAGAAAGCGATCGAAATTGGCGCCCCT TTTCCTTTTCCCTTTCTCTCTCAAAACTCAAAAGCTGGATCGACAAATCAATCACACCACACATAACTAGAAAAGGGAGA AAGAAAGCAAAAGCAAAAGCAAAAAAAGAAAAACTAACAGTAACCAATCATAAGAAGAAGCATGTCATTGCGAAGGCGAA CCTTGCTCAAGGTCATCGTTCTCGGCGACAGCGGGTACGTAACGCTACTCTCATCGTTCTAGGGTTTCTTTTCTCTCTTC ATCAACCCCTTTTTCTCAATCTTCATTCATTCATTGTTAGGGTTGGAAAGACCTCGTTGATGAATCAGTATCCTTCACCA TGATTTGCAACGCTCATTTCTGTAACTTCAGTATTTTTATTTTTATTTTTTTTACCTTTTTCGTGTTGCGTTATTTAATC CTTGATTTGGTATTAGTTTTTATTAGTTTTTCCTAATAGTATTTGTATCTTGTAATGTTGAATGAATCTTAGAGGATAAA TTGCATAATTATAAACCACATTGATAGTTTAATTTTTTGTTTTTGTCTTGATATCTAAATCGCTCGATGTAGGATCACTA TAAGCGGCAAAACTTTCTTCCAGTATTTATTGCAGTTGTTTACTTAGGCTAGAATCCGAGACATCTGATTAAGCCGAATT AACTTTCCCCCAAGTGGTGCACACAGTCAGCGGTGAACATTGAGATTTTTATAAAATCATAGTTTGTTAAATATGTATTT TATTATAATCTAGACTGTTAATTTTAGAAAGGAATGCATCTTTTTACTTGCCACCGAGCTTGGAGATCAGCTGGCCGGGT TGATCCAGTTGATCGGAGCACAATAAAGGTCTCAAGTTCGAGCCCTTGTGTTAAACTCTCAGAGGGAGTTGTCTTATTCA TACTCAGTTTGAGCAGCATTGCCTCTAATAGAATATAATTATGGTCTAGGGTCTCCAGAAAAAATGCACCTTTTAATTTA GATAAGTCAAGTCAGTAAACTATTTTAGTTCACATTAATATTTGGAAGATGCTACTCACTGCTCAGTGAATTGGCATATT CAACGACTATAGGATGTAGGTTGGGTTGTCCCAACCGTCTTCTCTTATTCCAACCGCTATCCTTGAATCCTTAGTTAATT CTGGCATTTTTTATGTTTTTTTATTGAATATTGTGATGCACATAACTAAGAGGTTATATGTTTAATGGAACAAATAGCCT TTAAAATTTAACCTTTTCTGTAAAGGTTATGATTATTTAAGATCAAGTTAAAGTTAGGCAAGCCTTAAAGTTATTTGTAT GCTTCTTTTCTTTCTTGAAATTTGCAAATGTGGACTGTTAACTACCTGTATAGATATGTGCATAAGAAGTTTAGTCAGCA ATATAAAGCCACAATTGGTGCTGATTTTGTCACTAAAGAACTCCAAATTGATGACAGACTTGTCACTCTACAAGTAAGTT TTCTAGTTCAATGGTATTTCAGTATTCCTTTTTGTTTTCCCTACAGATTTTTATTTAAATTCTTATATTCAATGTTTTGT ATGTCTGGTTAGTAGATATGGGACACTGCAGGGCAAGAGAGGTTTCAAAGTCTTGGGGTTGCATTTTATAGAGGAGCAGA TTGCTGTGTTCTAGTGTATGATGTTAATGTCATGAAGTCATTTGATACCCTTGACAACTGGCATGAGGAGTTTCTCAAAC AGGTTTTCATTGTCTTTTCTGTTTTTATGCCTTTGTTACTATTGGTGATTTGCATTATAGCCTTGACCCTCTTTCAGTCC TCCAAGTGTAAGTTGTAAGAAAAGACCCTGATCTTTAAGAAATGGATACCTTTGTGCATATTTGATGCTTATGGTACAAG ATGATTCTGAATATAAGCTGCTTCATGCATCTTTGAGTTCATGGAGAATTGGCAATGGAAAACTTCATTTCTTCATGTGT AGGGTTATGTTCCTAATTTGATCTTAGTCTTTGAACTGAAACTTCATTCTATTGTCAGTTGCAGCAGTAATTGATTTTAA TTATTACATATAGCTTTCTTCTGTTAAGAATATTTAGTTATGCAATAACATGACTTTGACCTTGTTTTAGGATCTTCTTC AAGGCACTTGTTACATCTGAAATTAATTCTTCTTGTGAGGTTAATGAATAGCAAAAGCTTAGTTTGTTTTGTTATTGTAC ATGACATGGACCAGCATTACCATATTCTGTAGTTTTTCTGTTGGAGATGGATTGAGTCTCCATCTCCCCACATAACCTAT CTTTCTTCGCAAGAGTTTATGTCATAGTGCTACTCATGTGTTGCTTGCTTATCTTCTTTTTCGTGTTGAACATGTTTTAA GTCTGTAGATTGCTTATCTTCTTTTTCTTTTTTGGTTCTCTATTGGATCCTAGCCCCTAGGACTCTAGGAGTCATTTTCA TTGTAAAACTAATTCACTAGTTCACAGAGTTAGTTAGTTAGTTAGAAGGGTATATAGATTATAGAGAACAGTAGGGGCTG TTTAGAGGCATCCAGATTGTAAAGTTAGGATTAGTGAATTGTTTTATTTTGCAGTTCCAGCATAATCTGTATCCTGTTTC TTACTTTATTTGTAATTTTATATATCGTCCACATTGGAATGCTGCTTTGATGTACAGTATATAATATGATTAATGCTATT GATCTGGTACATACTAGCATACCTGATATATGGTACAATTCTAAAGCTCATGGCTTTTTCTTTTTCCCTAAGGCTCAGAG TTTGTTGTTGAACTGTTTGTTTGCTTTGAGAGGAAGTCTGTGTTTACTTGGCACAGTTGAAGGAGTTTTTGTTGGTTGTT TATAAAGGGTTTTCAGAAATAAGGAGAGAAAACTTCTGCAAGAGAAAGAGAGATTTCTACATGTTGAATACACATATCTG TGCATGAGATACTACATGTACGGCACTGGTACTTTGCCAATTTTGGAGAGCAAAACCATGTGAGTGGTGGTGTATCAGAA ATATTAAATACCAAATAAATATTGTAAACCATGTTCCCTGAATGGATTCAAAATGTCAGATGACCTGCAGGGTTAAAATG AGTATAGACTCTGCTTAAAGTGAATTTGTGTCTCATGGAGAATATAGAACGTGCATATCAAGCTGAAGTCTGTCCATAAG GATGGGCGTACTGCTTACTTCATTTTTTATATTTTGTCTATTTCCGTACTGCAAGAAGATCCTCTCATTCTAGAACTCTT AGAAAACTAAATAAATAAACTCTGGAAAGCATCCCTTGTTTTTTTCTGCATATAACAAGCTAATAGCAGTTAGCACCCTT TTCAAGGGATGCAATTGAAATACACTAAAGTAATGCGGTCCAAACCAAAATAAGATAAAAGTAATTTATAAGAAGAAGGA AGGAACTGTTAAAGGATTCCAGCGTGGGCTAACATTCATTCGGCAAAATTAATGTCTCAATTTTCAGAAACCTTTATTAT TAGGCACATCCAATTAATGTTGAATATAGTGGAAGAATTAGTTAAATTTTTATCATTGATGGGATTTGTCTGACTTTCTA AAGACTGATGAACAAATATTTTGTCTATAGACAGAAACTAAGGGCCCCATTACTTGCCCTTACCAATTTGGAAGACGTAG GTAATCATAACTTAAACAGAATATCCTTCGCTATAGTTCATTTTGTTAAACAACTTCTTGATGCCAGCTGGGAGCTTGAT GCCAGCTTCTTGCTTTTGCTTGCCTTAACCAATCTGGGCGCTTGATGCCAGCTTCTGGCTTTTGCTTAGTTGTCCTTAAT AATCTTTATCTCTTTGTTATTCTTTAATAAGTCTGGCTGCCCTTTTCTTTGTATGTCTGCATTGCATTCTATTTAGTACA TCATATAAACTGAGGTATCAATTTTTTTTTGGGTGAATGAAACATCAATGTCTTGATTGAATTAATATACCACAGCATAA GTTATTTATGTAATTGGACTTCTCTGGATAGTAGTTTTCTATTCCATTTGAAGAGATTAGAGCTGACCAGATGTTTAAAT TGGCTTATCTGGTTATTTTATTATAGTTTGTTCCGTCATGATGTATAATTTTTTTCTGGGTCATCAAATGCTGCTGTATA TTTTCTTGTTCAGGTGGCTTTTTCATTCTCTCACATCTTTATGGACAGCCTTGTTCCTTCTCAATATTTAGCAGCTTTCA CTTTTGATTTCACTTTTTCTTTTCCTAGTGAAGATAGTTTTTGACTAGGATTTATGTTTTGTGACACAGGCAAACCCTTC TGATCCAAGGACTTTTCCCTTCATATTGCTTGGAAACAAAATTGATATTGATGGCGGGAATAGTAGAGTGGTAGGCAAAT GCTATGTGCACTTCTAAATTTTCTTATCTCTTGCATAAAGATCTAAATCTAATTATTTTCTGTCTAGGTTTCTGAGAAGA AAGCAAAAGACTGGTGTGCTTCAAAAGGGAATATTCCCTACTTTGAGACATCTGCAAAAGAGGACTACAATGTTGATGCT GCATTCCTTTGTATTGCCAAGACTGCTCTAGCCAATGAGCATGACCAGGACATGTAAGATTTGCATCCTTATGTACTAAA TATCATGTGGATATATCATGTATGTTTTGTACAACTCCGAAAGAATATGGTTTAATTGTTACTATTTAGACATTATACCT TGAGTTTAATTACTGTCTTTGTACCATATTATAAGTGAGGGATCCTTCAGTTATCAACATGGCAAAGCCTGCCAATCCTC CCGCATATTAGACAAAAAATCCTCTCACCAATTTCCATAACTGAGCTTTGGTAACATATATTTATCCTAAAACTAGTGAT ATCTCTACACCTTATGACAATTTTTTTGAGTAATAAATGCTTATATGCATTTACCCTTCCTTGCCTGCCTTGAGATGCCT GAGAAATGGCCTTTGTGAGGTACATAAACCAGGAAACTGTGCTCTTAGCTAGTAGCTGTACGATGAGAATTGTTGCATTT ACATTAAGTAAATGATAATATGTTGAAATGTTAATAATGAGCCTGGTTAAAACTATTTAACACGAAGATTGAGATAGTGG ATTTATCCATGTTTCATTTGTAATTTACTGTTTATGATTATGGTTCTATATAGTGTAAGAGTGGATATGACACTACTACT ACTACAACATTCTTTTAATTGTTTGAACTCAATCTTTGAATTTATGCGTGTGTTCCAATATTTAATAGGGATATGGTTTA CAACTTCCATTGACTCTTTGGGTTGGTACTAGTACTAATATGAGTTTTAAGGTTAATACTACTAGCAATAGCATGGTGTT GGGTCCCAACAAACACTTTGTAACAAAAGCTCATGTCACTGATCAAATATTAAGTTGTAGTGCTATAAATAGAAATACAT TTTCTTTGTCTTGCATGGCACATGTTTTGACAGAACCAAGCCAAGAAGAGGATAGAAAGAAGAGTTTATTGAAGCAAATG TGATAAACCCCTGAATATTTGAGAGATCCAGGTCTCTCCTTAACCCAATTACCATGATCCCCAGGATAGCAAAACACTCT CAGCTCCCTCTTATTTATGACATTCCCTCCCGTACACTAACTCACGAAACTATCAACACTCTAACTGACCTGCTTCTAAC TAACCAAAGGGGATGCGGTTTCCTATCAAAACTCTACCCCTATGTAAACTCAGAAAAATGGACCCAAAATACTGTGTTGA TTCAGAGTTGGCAGTATAGACTCAAATATATAATCGGTACACAATTACAGAAAAGGAAATAACATCTCTCATAACTAAGA GAATAAATTCCTGTTTAAATAAGAATGATTCCCTGGTCAACTACAGCCTCTACAGAAATTACACCTAATTAAATATTTGG TCAGTTACAGCTATATACAACAATTAATCCTATTTATAGCACTCTCCTACGTCCTAATCAGGAATGATTTCCTGATCAGT AACAACAAAGGAATTCAATTTTCAAATCAATTCGTTTGACATTCCCCCTCAAATTGATCTTGGTAAGTCTACAAGCATCA ATTTGCTAGCTAGGACATTGTGGCGCCGACGTGTTAAGGATTTGGTGAAAATGACAGCAATCTGAACAGATGTTGAAACA TGTGGTAGAGTGATAATTCGGCGGTCATAGGCTTCCCGGATAGAGTGACAATCAACCTCTATGTGCTTTGTTCGTTCATG GTATACTGGATTCGCTGCAATTTGTATGCGGCATTGCATGTCCATGCTTGATCTCGTCAAAAGTCTGAAACAGACATCTG ATATTGTGAGATGAAATGGGTGATTGTGCCTTCACATTTGATCTGAACCTCTGCTACCAACCAATTATTTAATCAATTAA TTTTGTGGTAGAGATGGAAGGAGAGCTTTATGCAGTTTGGCCTTGGTGGTTAACAGTGGCAGTCCCTCTGTTATTACTTA TTAGTGGCAGGCAGTGACTCACTTCCCATCTCAGTATGTATGTCTCAGCATCCAGTTTGAATGTAAACCGTTTATGGATA AACTTGATTGTTTGGTTCGTTCTACTTCATTCTTGTGGGAGTTTGTTTATGCACTTGCTAAATTTTTTCTTTCTTCTTTT GGGGTTATTTGGATGTCTTATTGACATTTCCACCTTTCAGATTAGAGATATATTAACAGATAGCTGCTTAATTGACCTCT GAGTTCAATATTTCAATGTCCATGGCAGATATTTTCAAGCTATTCCAGAGGCAGCTCCAGAGAATGAGCAGAAGGGTGGT TGCCAATGCTGATCGGAAAGGTTGAATGATCTCACCAATTTCTGATCGCGTGGAGCAGATTCTTCAGATTCTTTTTGGTC TCGGTGATTTTCTTCTCTTTTTGTACACTCTGTGCAATGCTTGTGAGTAAAATGTACCTTGACGCTTGATGTTGCCACGG TAGTCCTGATTTCAGATGGACAAGCTTGTGAGTGTTGGATTTGTTGGAAAGAATGTTAAATTCATTTACCACGGGTTGCT TAGACAAAAAAAATTCACATTAATTCTCAAATTTGTGGCATGAGAATGATTTATTTTCAGTTTGGGGAACCTGAAATGGT AATCGATCATCGAACACACAAATTTACTTGTAGCATAGTGGTTCCTTGCCTATGCATAGTAGGGTAGTTAAAGTTCGGTT TCGCGTGGAAACAAATTTCATTACTTACTTTCAAATTCAAA
CDS sequence (LotjaGi2g1v0118000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTGCGAAGGCGAACCTTGCTCAAGGTCATCGTTCTCGGCGACAGCGGGGTTGGAAAGACCTCGTTGATGAATCA ATATGTGCATAAGAAGTTTAGTCAGCAATATAAAGCCACAATTGGTGCTGATTTTGTCACTAAAGAACTCCAAATTGATG ACAGACTTGTCACTCTACAAATATGGGACACTGCAGGGCAAGAGAGGTTTCAAAGTCTTGGGGTTGCATTTTATAGAGGA GCAGATTGCTGTGTTCTAGTGTATGATGTTAATGTCATGAAGTCATTTGATACCCTTGACAACTGGCATGAGGAGTTTCT CAAACAGGCAAACCCTTCTGATCCAAGGACTTTTCCCTTCATATTGCTTGGAAACAAAATTGATATTGATGGCGGGAATA GTAGAGTGGTTTCTGAGAAGAAAGCAAAAGACTGGTGTGCTTCAAAAGGGAATATTCCCTACTTTGAGACATCTGCAAAA GAGGACTACAATGTTGATGCTGCATTCCTTTGTATTGCCAAGACTGCTCTAGCCAATGAGCATGACCAGGACATATATTT TCAAGCTATTCCAGAGGCAGCTCCAGAGAATGAGCAGAAGGGTGGTTGCCAATGCTGA
Protein sequence (LotjaGi2g1v0118000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRG ADCCVLVYDVNVMKSFDTLDNWHEEFLKQANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAK EDYNVDAAFLCIAKTALANEHDQDIYFQAIPEAAPENEQKGGCQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 190 | 189 | 2.1E-65 | – | |
| ProSiteProfiles | 4 | 205 | 202 | 32.536 | – | |
| SUPERFAMILY | 5 | 182 | 178 | 5.05E-55 | ||
| SMART | 6 | 179 | 174 | 2.6E-26 | – | |
| PANTHER | 6 | 204 | 199 | 1.9E-103 | – | |
| PANTHER | 6 | 204 | 199 | 1.9E-103 | – | |
| SMART | 9 | 179 | 171 | 1.9E-91 | – | |
| CDD | 9 | 181 | 173 | 2.6545E-127 | – | |
| TIGRFAM | 9 | 170 | 162 | 1.1E-25 | ||
| PRINTS | 9 | 30 | 22 | 2.9E-39 | – | |
| Pfam | 10 | 176 | 167 | 8.9E-56 | ||
| SMART | 11 | 179 | 169 | 7.0E-13 | – | |
| SMART | 14 | 205 | 192 | 1.1E-7 | – | |
| PRINTS | 32 | 48 | 17 | 2.9E-39 | – | |
| PRINTS | 50 | 72 | 23 | 2.9E-39 | – | |
| PRINTS | 116 | 129 | 14 | 2.9E-39 | – | |
| PRINTS | 154 | 176 | 23 | 2.9E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0118000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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