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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0118000 |
| Transcript ID | LotjaGi2g1v0118000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:43240965..43244467) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGCCTTAAAGTTATTTGTATGCTTCTTTTCTTTCTTGAAATTTGCAAATGTGGACTGTTAACTACCTGTATAGATAT GTGCATAAGAAGTTTAGTCAGCAATATAAAGCCACAATTGGTGCTGATTTTGTCACTAAAGAACTCCAAATTGATGACAG ACTTGTCACTCTACAAGTAAGTTTTCTAGTTCAATGGTATTTCAGTATTCCTTTTTGTTTTCCCTACAGATTTTTATTTA AATTCTTATATTCAATGTTTTGTATGTCTGGTTAGTAGATATGGGACACTGCAGGGCAAGAGAGGTTTCAAAGTCTTGGG GTTGCATTTTATAGAGGAGCAGATTGCTGTGTTCTAGTGTATGATGTTAATGTCATGAAGTCATTTGATACCCTTGACAA CTGGCATGAGGAGTTTCTCAAACAGGTTTTCATTGTCTTTTCTGTTTTTATGCCTTTGTTACTATTGGTGATTTGCATTA TAGCCTTGACCCTCTTTCAGTCCTCCAAGTGTAAGTTGTAAGAAAAGACCCTGATCTTTAAGAAATGGATACCTTTGTGC ATATTTGATGCTTATGGTACAAGATGATTCTGAATATAAGCTGCTTCATGCATCTTTGAGTTCATGGAGAATTGGCAATG GAAAACTTCATTTCTTCATGTGTAGGGTTATGTTCCTAATTTGATCTTAGTCTTTGAACTGAAACTTCATTCTATTGTCA GTTGCAGCAGTAATTGATTTTAATTATTACATATAGCTTTCTTCTGTTAAGAATATTTAGTTATGCAATAACATGACTTT GACCTTGTTTTAGGATCTTCTTCAAGGCACTTGTTACATCTGAAATTAATTCTTCTTGTGAGGTTAATGAATAGCAAAAG CTTAGTTTGTTTTGTTATTGTACATGACATGGACCAGCATTACCATATTCTGTAGTTTTTCTGTTGGAGATGGATTGAGT CTCCATCTCCCCACATAACCTATCTTTCTTCGCAAGAGTTTATGTCATAGTGCTACTCATGTGTTGCTTGCTTATCTTCT TTTTCGTGTTGAACATGTTTTAAGTCTGTAGATTGCTTATCTTCTTTTTCTTTTTTGGTTCTCTATTGGATCCTAGCCCC TAGGACTCTAGGAGTCATTTTCATTGTAAAACTAATTCACTAGTTCACAGAGTTAGTTAGTTAGTTAGAAGGGTATATAG ATTATAGAGAACAGTAGGGGCTGTTTAGAGGCATCCAGATTGTAAAGTTAGGATTAGTGAATTGTTTTATTTTGCAGTTC CAGCATAATCTGTATCCTGTTTCTTACTTTATTTGTAATTTTATATATCGTCCACATTGGAATGCTGCTTTGATGTACAG TATATAATATGATTAATGCTATTGATCTGGTACATACTAGCATACCTGATATATGGTACAATTCTAAAGCTCATGGCTTT TTCTTTTTCCCTAAGGCTCAGAGTTTGTTGTTGAACTGTTTGTTTGCTTTGAGAGGAAGTCTGTGTTTACTTGGCACAGT TGAAGGAGTTTTTGTTGGTTGTTTATAAAGGGTTTTCAGAAATAAGGAGAGAAAACTTCTGCAAGAGAAAGAGAGATTTC TACATGTTGAATACACATATCTGTGCATGAGATACTACATGTACGGCACTGGTACTTTGCCAATTTTGGAGAGCAAAACC ATGTGAGTGGTGGTGTATCAGAAATATTAAATACCAAATAAATATTGTAAACCATGTTCCCTGAATGGATTCAAAATGTC AGATGACCTGCAGGGTTAAAATGAGTATAGACTCTGCTTAAAGTGAATTTGTGTCTCATGGAGAATATAGAACGTGCATA TCAAGCTGAAGTCTGTCCATAAGGATGGGCGTACTGCTTACTTCATTTTTTATATTTTGTCTATTTCCGTACTGCAAGAA GATCCTCTCATTCTAGAACTCTTAGAAAACTAAATAAATAAACTCTGGAAAGCATCCCTTGTTTTTTTCTGCATATAACA AGCTAATAGCAGTTAGCACCCTTTTCAAGGGATGCAATTGAAATACACTAAAGTAATGCGGTCCAAACCAAAATAAGATA AAAGTAATTTATAAGAAGAAGGAAGGAACTGTTAAAGGATTCCAGCGTGGGCTAACATTCATTCGGCAAAATTAATGTCT CAATTTTCAGAAACCTTTATTATTAGGCACATCCAATTAATGTTGAATATAGTGGAAGAATTAGTTAAATTTTTATCATT GATGGGATTTGTCTGACTTTCTAAAGACTGATGAACAAATATTTTGTCTATAGACAGAAACTAAGGGCCCCATTACTTGC CCTTACCAATTTGGAAGACGTAGGTAATCATAACTTAAACAGAATATCCTTCGCTATAGTTCATTTTGTTAAACAACTTC TTGATGCCAGCTGGGAGCTTGATGCCAGCTTCTTGCTTTTGCTTGCCTTAACCAATCTGGGCGCTTGATGCCAGCTTCTG GCTTTTGCTTAGTTGTCCTTAATAATCTTTATCTCTTTGTTATTCTTTAATAAGTCTGGCTGCCCTTTTCTTTGTATGTC TGCATTGCATTCTATTTAGTACATCATATAAACTGAGGTATCAATTTTTTTTTGGGTGAATGAAACATCAATGTCTTGAT TGAATTAATATACCACAGCATAAGTTATTTATGTAATTGGACTTCTCTGGATAGTAGTTTTCTATTCCATTTGAAGAGAT TAGAGCTGACCAGATGTTTAAATTGGCTTATCTGGTTATTTTATTATAGTTTGTTCCGTCATGATGTATAATTTTTTTCT GGGTCATCAAATGCTGCTGTATATTTTCTTGTTCAGGTGGCTTTTTCATTCTCTCACATCTTTATGGACAGCCTTGTTCC TTCTCAATATTTAGCAGCTTTCACTTTTGATTTCACTTTTTCTTTTCCTAGTGAAGATAGTTTTTGACTAGGATTTATGT TTTGTGACACAGGCAAACCCTTCTGATCCAAGGACTTTTCCCTTCATATTGCTTGGAAACAAAATTGATATTGATGGCGG GAATAGTAGAGTGGTAGGCAAATGCTATGTGCACTTCTAAATTTTCTTATCTCTTGCATAAAGATCTAAATCTAATTATT TTCTGTCTAGGTTTCTGAGAAGAAAGCAAAAGACTGGTGTGCTTCAAAAGGGAATATTCCCTACTTTGAGACATCTGCAA AAGAGGACTACAATGTTGATGCTGCATTCCTTTGTATTGCCAAGACTGCTCTAGCCAATGAGCATGACCAGGACATGTAA GATTTGCATCCTTATGTACTAAATATCATGTGGATATATCATGTATGTTTTGTACAACTCCGAAAGAATATGGTTTAATT GTTACTATTTAGACATTATACCTTGAGTTTAATTACTGTCTTTGTACCATATTATAAGTGAGGGATCCTTCAGTTATCAA CATGGCAAAGCCTGCCAATCCTCCCGCATATTAGACAAAAAATCCTCTCACCAATTTCCATAA
CDS sequence (LotjaGi2g1v0118000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGACTGTTAACTACCTGTATAGATATGTGCATAAGAAGTTTAGTCAGCAATATAAAGCCACAATTGGTGCTGATTT TGTCACTAAAGAACTCCAAATTGATGACAGACTTGTCACTCTACAAATATGGGACACTGCAGGGCAAGAGAGGTTTCAAA GTCTTGGGGTTGCATTTTATAGAGGAGCAGATTGCTGTGTTCTAGTGTATGATGTTAATGTCATGAAGTCATTTGATACC CTTGACAACTGGCATGAGGAGTTTCTCAAACAGGTTTCTGAGAAGAAAGCAAAAGACTGGTGTGCTTCAAAAGGGAATAT TCCCTACTTTGAGACATCTGCAAAAGAGGACTACAATGTTGATGCTGCATTCCTTTGTATTGCCAAGACTGCTCTAGCCA ATGAGCATGACCAGGACATTTATCAACATGGCAAAGCCTGCCAATCCTCCCGCATATTAGACAAAAAATCCTCTCACCAA TTTCCATAA
Protein sequence (LotjaGi2g1v0118000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWTVNYLYRYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDT LDNWHEEFLKQVSEKKAKDWCASKGNIPYFETSAKEDYNVDAAFLCIAKTALANEHDQDIYQHGKACQSSRILDKKSSHQ FP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 162 | 162 | 21.683 | – | |
| SMART | 3 | 134 | 132 | 2.6E-8 | – | |
| Gene3D | 5 | 160 | 156 | 2.8E-41 | – | |
| Pfam | 7 | 93 | 87 | 1.8E-29 | ||
| SMART | 7 | 134 | 128 | 1.2E-6 | – | |
| PANTHER | 7 | 89 | 83 | 3.4E-69 | – | |
| SMART | 7 | 134 | 128 | 1.1E-48 | – | |
| PANTHER | 7 | 89 | 83 | 3.4E-69 | – | |
| SUPERFAMILY | 7 | 138 | 132 | 9.85E-36 | ||
| PRINTS | 14 | 30 | 17 | 1.0E-12 | – | |
| PRINTS | 32 | 54 | 23 | 1.0E-12 | – | |
| PANTHER | 90 | 144 | 55 | 3.4E-69 | – | |
| PANTHER | 90 | 144 | 55 | 3.4E-69 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0118000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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