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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0118000 |
| Transcript ID | LotjaGi2g1v0118000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|Q40211|Q40211_LOTJA RAB7A; Found in the gene: LotjaGi2g1v0118000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:43240965..43244467) extracted from Lotus japonicus Gifu genome v1.2.
GCAAGCCTTAAAGTTATTTGTATGCTTCTTTTCTTTCTTGAAATTTGCAAATGTGGACTGTTAACTACCTGTATAGATAT GTGCATAAGAAGTTTAGTCAGCAATATAAAGCCACAATTGGTGCTGATTTTGTCACTAAAGAACTCCAAATTGATGACAG ACTTGTCACTCTACAAGTAAGTTTTCTAGTTCAATGGTATTTCAGTATTCCTTTTTGTTTTCCCTACAGATTTTTATTTA AATTCTTATATTCAATGTTTTGTATGTCTGGTTAGTAGATATGGGACACTGCAGGGCAAGAGAGGTTTCAAAGTCTTGGG GTTGCATTTTATAGAGGAGCAGATTGCTGTGTTCTAGTGTATGATGTTAATGTCATGAAGTCATTTGATACCCTTGACAA CTGGCATGAGGAGTTTCTCAAACAGGTTTTCATTGTCTTTTCTGTTTTTATGCCTTTGTTACTATTGGTGATTTGCATTA TAGCCTTGACCCTCTTTCAGTCCTCCAAGTGTAAGTTGTAAGAAAAGACCCTGATCTTTAAGAAATGGATACCTTTGTGC ATATTTGATGCTTATGGTACAAGATGATTCTGAATATAAGCTGCTTCATGCATCTTTGAGTTCATGGAGAATTGGCAATG GAAAACTTCATTTCTTCATGTGTAGGGTTATGTTCCTAATTTGATCTTAGTCTTTGAACTGAAACTTCATTCTATTGTCA GTTGCAGCAGTAATTGATTTTAATTATTACATATAGCTTTCTTCTGTTAAGAATATTTAGTTATGCAATAACATGACTTT GACCTTGTTTTAGGATCTTCTTCAAGGCACTTGTTACATCTGAAATTAATTCTTCTTGTGAGGTTAATGAATAGCAAAAG CTTAGTTTGTTTTGTTATTGTACATGACATGGACCAGCATTACCATATTCTGTAGTTTTTCTGTTGGAGATGGATTGAGT CTCCATCTCCCCACATAACCTATCTTTCTTCGCAAGAGTTTATGTCATAGTGCTACTCATGTGTTGCTTGCTTATCTTCT TTTTCGTGTTGAACATGTTTTAAGTCTGTAGATTGCTTATCTTCTTTTTCTTTTTTGGTTCTCTATTGGATCCTAGCCCC TAGGACTCTAGGAGTCATTTTCATTGTAAAACTAATTCACTAGTTCACAGAGTTAGTTAGTTAGTTAGAAGGGTATATAG ATTATAGAGAACAGTAGGGGCTGTTTAGAGGCATCCAGATTGTAAAGTTAGGATTAGTGAATTGTTTTATTTTGCAGTTC CAGCATAATCTGTATCCTGTTTCTTACTTTATTTGTAATTTTATATATCGTCCACATTGGAATGCTGCTTTGATGTACAG TATATAATATGATTAATGCTATTGATCTGGTACATACTAGCATACCTGATATATGGTACAATTCTAAAGCTCATGGCTTT TTCTTTTTCCCTAAGGCTCAGAGTTTGTTGTTGAACTGTTTGTTTGCTTTGAGAGGAAGTCTGTGTTTACTTGGCACAGT TGAAGGAGTTTTTGTTGGTTGTTTATAAAGGGTTTTCAGAAATAAGGAGAGAAAACTTCTGCAAGAGAAAGAGAGATTTC TACATGTTGAATACACATATCTGTGCATGAGATACTACATGTACGGCACTGGTACTTTGCCAATTTTGGAGAGCAAAACC ATGTGAGTGGTGGTGTATCAGAAATATTAAATACCAAATAAATATTGTAAACCATGTTCCCTGAATGGATTCAAAATGTC AGATGACCTGCAGGGTTAAAATGAGTATAGACTCTGCTTAAAGTGAATTTGTGTCTCATGGAGAATATAGAACGTGCATA TCAAGCTGAAGTCTGTCCATAAGGATGGGCGTACTGCTTACTTCATTTTTTATATTTTGTCTATTTCCGTACTGCAAGAA GATCCTCTCATTCTAGAACTCTTAGAAAACTAAATAAATAAACTCTGGAAAGCATCCCTTGTTTTTTTCTGCATATAACA AGCTAATAGCAGTTAGCACCCTTTTCAAGGGATGCAATTGAAATACACTAAAGTAATGCGGTCCAAACCAAAATAAGATA AAAGTAATTTATAAGAAGAAGGAAGGAACTGTTAAAGGATTCCAGCGTGGGCTAACATTCATTCGGCAAAATTAATGTCT CAATTTTCAGAAACCTTTATTATTAGGCACATCCAATTAATGTTGAATATAGTGGAAGAATTAGTTAAATTTTTATCATT GATGGGATTTGTCTGACTTTCTAAAGACTGATGAACAAATATTTTGTCTATAGACAGAAACTAAGGGCCCCATTACTTGC CCTTACCAATTTGGAAGACGTAGGTAATCATAACTTAAACAGAATATCCTTCGCTATAGTTCATTTTGTTAAACAACTTC TTGATGCCAGCTGGGAGCTTGATGCCAGCTTCTTGCTTTTGCTTGCCTTAACCAATCTGGGCGCTTGATGCCAGCTTCTG GCTTTTGCTTAGTTGTCCTTAATAATCTTTATCTCTTTGTTATTCTTTAATAAGTCTGGCTGCCCTTTTCTTTGTATGTC TGCATTGCATTCTATTTAGTACATCATATAAACTGAGGTATCAATTTTTTTTTGGGTGAATGAAACATCAATGTCTTGAT TGAATTAATATACCACAGCATAAGTTATTTATGTAATTGGACTTCTCTGGATAGTAGTTTTCTATTCCATTTGAAGAGAT TAGAGCTGACCAGATGTTTAAATTGGCTTATCTGGTTATTTTATTATAGTTTGTTCCGTCATGATGTATAATTTTTTTCT GGGTCATCAAATGCTGCTGTATATTTTCTTGTTCAGGTGGCTTTTTCATTCTCTCACATCTTTATGGACAGCCTTGTTCC TTCTCAATATTTAGCAGCTTTCACTTTTGATTTCACTTTTTCTTTTCCTAGTGAAGATAGTTTTTGACTAGGATTTATGT TTTGTGACACAGGCAAACCCTTCTGATCCAAGGACTTTTCCCTTCATATTGCTTGGAAACAAAATTGATATTGATGGCGG GAATAGTAGAGTGGTAGGCAAATGCTATGTGCACTTCTAAATTTTCTTATCTCTTGCATAAAGATCTAAATCTAATTATT TTCTGTCTAGGTTTCTGAGAAGAAAGCAAAAGACTGGTGTGCTTCAAAAGGGAATATTCCCTACTTTGAGACATCTGCAA AAGAGGACTACAATGTTGATGCTGCATTCCTTTGTATTGCCAAGACTGCTCTAGCCAATGAGCATGACCAGGACATGTAA GATTTGCATCCTTATGTACTAAATATCATGTGGATATATCATGTATGTTTTGTACAACTCCGAAAGAATATGGTTTAATT GTTACTATTTAGACATTATACCTTGAGTTTAATTACTGTCTTTGTACCATATTATAAGTGAGGGATCCTTCAGTTATCAA CATGGCAAAGCCTGCCAATCCTCCCGCATATTAGACAAAAAATCCTCTCACCAATTTCCATAA
CDS sequence (LotjaGi2g1v0118000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGACTGTTAACTACCTGTATAGATATGTGCATAAGAAGTTTAGTCAGCAATATAAAGCCACAATTGGTGCTGATTT TGTCACTAAAGAACTCCAAATTGATGACAGACTTGTCACTCTACAAATATGGGACACTGCAGGGCAAGAGAGGTTTCAAA GTCTTGGGGTTGCATTTTATAGAGGAGCAGATTGCTGTGTTCTAGTGTATGATGTTAATGTCATGAAGTCATTTGATACC CTTGACAACTGGCATGAGGAGTTTCTCAAACAGGCAAACCCTTCTGATCCAAGGACTTTTCCCTTCATATTGCTTGGAAA CAAAATTGATATTGATGGCGGGAATAGTAGAGTGGTTTCTGAGAAGAAAGCAAAAGACTGGTGTGCTTCAAAAGGGAATA TTCCCTACTTTGAGACATCTGCAAAAGAGGACTACAATGTTGATGCTGCATTCCTTTGTATTGCCAAGACTGCTCTAGCC AATGAGCATGACCAGGACATTTATCAACATGGCAAAGCCTGCCAATCCTCCCGCATATTAGACAAAAAATCCTCTCACCA ATTTCCATAA
Protein sequence (LotjaGi2g1v0118000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWTVNYLYRYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDT LDNWHEEFLKQANPSDPRTFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDYNVDAAFLCIAKTALA NEHDQDIYQHGKACQSSRILDKKSSHQFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 189 | 189 | 28.619 | – | |
| SMART | 3 | 161 | 159 | 2.0E-11 | – | |
| SMART | 3 | 188 | 186 | 2.3E-4 | – | |
| Gene3D | 5 | 174 | 170 | 4.0E-54 | – | |
| TIGRFAM | 7 | 152 | 146 | 9.6E-18 | ||
| Pfam | 7 | 158 | 152 | 2.4E-46 | ||
| PANTHER | 7 | 171 | 165 | 1.6E-82 | – | |
| PANTHER | 7 | 171 | 165 | 1.6E-82 | – | |
| SUPERFAMILY | 7 | 165 | 159 | 1.3E-43 | ||
| SMART | 7 | 161 | 155 | 1.8E-70 | – | |
| SMART | 7 | 161 | 155 | 6.4E-9 | – | |
| CDD | 9 | 163 | 155 | 2.19977E-109 | – | |
| PRINTS | 14 | 30 | 17 | 2.1E-27 | – | |
| PRINTS | 32 | 54 | 23 | 2.1E-27 | – | |
| PRINTS | 98 | 111 | 14 | 2.1E-27 | – | |
| PRINTS | 136 | 158 | 23 | 2.1E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0118000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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