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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0121500 |
| Transcript ID | LotjaGi2g1v0121500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor Myb; TAIR: AT5G14750.1 myb domain protein 66; Swiss-Prot: sp|Q9SEI0|WER_ARATH Transcription factor WER; TrEMBL-Plants: tr|A0A0L9TQV0|A0A0L9TQV0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0121500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:44885783..44887516) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATATATGTCATTCTCATTTTCTCTTGAAAAGATGCCTAGAAAATGTGGGGCCATGGTATATATTTTATAAATTGC ACTCATAAGTCATAACATACCTTGTTTTGAAACTGAACACTGAAGAAGACCACACAGAACAGAAACAAAACTGCGCTTGA GAGCAACAATAATGGGAGGAGGTGAACATGGATATAAGAAGGGGTTCTGGAATGTGGATGAAGACAGAGTTCTAATGAGT TATGTCAAGGAACATGGAATGGGGAAATGGAATCGCATAGCTAAAGTTACAGGTATATTTGTCTTAATTACATGTTTCAT GTTTCTCTGTTTTGTATATATCTCTCATCATTCTGAGTTTCTTATTGTAGCAGGGTTGAAGAGAAGTGGAAAAAGTTGCA GATTGAGGTGGATGAATTATCTGAGTCCTGATGTTAAGCGTGGGGGCTTCTCACAAGATGAAGAAGATCTTGTTATTCGC CTCCACAAGCTCCTTGGAAACAGGTTCGTACATCTCTTGATGTTCGACATAAAACACCCAAATGTATTAAACGTACAATT ACTAGAATAAGATGTGTGTTGGAAATTCCATTAGTTTCACATTTGATTTTACTTAAATTTTGTAAATAAAATTATTAATC CATTTGTGATAAGATTTTTCATTTTTTTCCAACTGCCTGAATCTAGCTACAGCTAGAGAGGCAAGAATAGTGATAAGTGT GATCTATTAGGAAAGAAAAGAGGGGGAAAAAAGTGAGTATGAGTATAAGTTTTGCCTACTAAACGAGTTCTTTTGGTGTG TTCATATTAAGTTTAGCACATAAGAAACATATCGTAATTAGGCTTTGTCTACACTGGATCGAAAAATCATGATTCACAAG ATAAAACGATTTATCTTCAAATAAGTTTTAGCATGATGAATATTATTCGTAAAATCATGATTAATTGGTGGATCAGTTTT TAGCATGTTCTATTATAAGACTATAATTAACATGTACTAAATGTCAATAGTCAAAATATGGTTTATTAATAATAGACTTC TTTTTAACAAGTTACACAGTAAAATTTTGAGGCATATTCAGTACACACATTGCACAATTGACTAATGCATTGCTCTGTTT AGGTGGTCTTTGATTGCTGGGAGAATTCCAGGGAGAACAGACAACCAAGTGAAGAACTATTGGAACACTCATTTAAGCAA GAAGCTTGGTGTTAACAAGGGAAAAAGCAAGTTTCATGCATCTGATCCACAAACTGTCCCTAAGGAACCAAAGGAAAATT CAGAGTCAATTGGTGAGGAAGAAGGTGAAAAGCATTTGCAAGCAAGCTCATGTGGAGATATGAGCTTTGCAAGCATATAT GAAGGGATCATGACAGATGATTTTGAAACTGCATTTTGTTTTGCTAACACTGATCAGCTGAATCTTCAGAGCCCTTACTT TTCGGAGTCTTTTCTTCAAGAGTATTTTCTTGGTCTTTGATTGAGACATCCTCTTCAGCATGGCCCCTCCAAATAAATTT ATTAATGTTTGGTCCATATATTTATTTTATTTTTATTGCAAAAATAATTGCATCCCAGGTATCTCTGATTATGTCAGTTT CACTACACAATGCCTACACTGTAGTTTTGCACTTTTGCTAGTTGCACCAGGGTGAAGTCTTGGGTACCGTCCCAAAGAAT ATTATTTTGTTCACATGTGATATTTCGATATGTGGAAATAGATGAAGAGAAGAG
CDS sequence (LotjaGi2g1v0121500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGAGGTGAACATGGATATAAGAAGGGGTTCTGGAATGTGGATGAAGACAGAGTTCTAATGAGTTATGTCAAGGA ACATGGAATGGGGAAATGGAATCGCATAGCTAAAGTTACAGGGTTGAAGAGAAGTGGAAAAAGTTGCAGATTGAGGTGGA TGAATTATCTGAGTCCTGATGTTAAGCGTGGGGGCTTCTCACAAGATGAAGAAGATCTTGTTATTCGCCTCCACAAGCTC CTTGGAAACAGGTGGTCTTTGATTGCTGGGAGAATTCCAGGGAGAACAGACAACCAAGTGAAGAACTATTGGAACACTCA TTTAAGCAAGAAGCTTGGTGTTAACAAGGGAAAAAGCAAGTTTCATGCATCTGATCCACAAACTGTCCCTAAGGAACCAA AGGAAAATTCAGAGTCAATTGGTGAGGAAGAAGGTGAAAAGCATTTGCAAGCAAGCTCATGTGGAGATATGAGCTTTGCA AGCATATATGAAGGGATCATGACAGATGATTTTGAAACTGCATTTTGTTTTGCTAACACTGATCAGCTGAATCTTCAGAG CCCTTACTTTTCGGAGTCTTTTCTTCAAGAGTATTTTCTTGGTCTTTGA
Protein sequence (LotjaGi2g1v0121500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGGEHGYKKGFWNVDEDRVLMSYVKEHGMGKWNRIAKVTGLKRSGKSCRLRWMNYLSPDVKRGGFSQDEEDLVIRLHKL LGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVNKGKSKFHASDPQTVPKEPKENSESIGEEEGEKHLQASSCGDMSFA SIYEGIMTDDFETAFCFANTDQLNLQSPYFSESFLQEYFLGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 190 | 186 | 2.7E-72 | – | |
| ProSiteProfiles | 5 | 57 | 53 | 16.684 | ||
| Gene3D | 5 | 62 | 58 | 1.0E-17 | – | |
| PANTHER | 5 | 190 | 186 | 2.7E-72 | ||
| SUPERFAMILY | 7 | 104 | 98 | 4.67E-30 | ||
| SMART | 9 | 59 | 51 | 2.2E-13 | ||
| Pfam | 11 | 57 | 47 | 7.9E-14 | ||
| CDD | 13 | 57 | 45 | 1.47423E-11 | ||
| ProSiteProfiles | 58 | 112 | 55 | 25.631 | ||
| SMART | 62 | 110 | 49 | 5.8E-16 | ||
| Pfam | 63 | 108 | 46 | 1.6E-14 | ||
| Gene3D | 65 | 140 | 76 | 3.2E-20 | – | |
| CDD | 66 | 108 | 43 | 1.07747E-12 | ||
| MobiDBLite | 117 | 147 | 31 | - | – | |
| MobiDBLite | 125 | 147 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0121500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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