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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0122800 |
| Transcript ID | LotjaGi2g1v0122800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|P30075|CHS4_MEDSA Chalcone synthase 4; TrEMBL-Plants: tr|I3T7A9|I3T7A9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45158299..45159817) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTTTCCACTTCCACCTTCCCATACATGCATATAAATTCCCTTATCCCCTCACAACTTTGCCAACCACAACGAACGAC AACTCCTACTGCAAATAAGTGCCAATTAATTGAGCTCAATTTGCAGTGCTTCTTCCTTTGCTTCCCAAATATCTTTGCTT ACAAACTTGATATCATCACCAACAAAAAGAATTTAAAGATGGTGAGTGTAGCTGAGATTCGCAAGGCTCAAAGAGCTGAA GGCCCAGCAACCATCTTCGCTATTGGCACTGCAAACCCTCCTAACTGTGTTGATCAAAGCACTTACCCTGATTTCTACTT CAGAGTCACCAACAGTGAGCACAAAACTGAGCTTAAGGAGAAGTTTCAGCGCATGTGTAAGCATTCTATGTTTTTCTATC TTGCTCCATTTTTTCTATATAACATTCATTTAGATTGCTAGACTAGTCATTATCAGATTGGCTTTGGTGTTTTCTTGATT ATATTGTACTAATGTTACTTCTTTATAATTGATTTCAGGTGACAAGTCTATGATCAAGAAGAGATACATGCACTTGACAG AAGATCTTTTGAAAGAGAACCCTAACATGTGCGCTTATATGGCACCTTCTCTGGATGCTAGGCAAGACATGGTGGTTGTA GAAGTACCTAGACTGGGTAAAGAAGCAGCAGTAAAGGCTATTAAAGAATGGGGTCAACCTAAGTCCAAGATTACCCACTT AATATTTTGCACCACAAGTGGTGTAGACATGCCCGGTGCTGATTATCAACTCACCAAACTCCTGGGTCTTCGCCCTTATG TGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTCCGTTTGGCTAAGGACTTGGCTGAGAAC AACAAAGGTGCGCGTGTGCTGGTTGTTTGTTCTGAACTTACTGCAGTTACCTTTCGTGGCCCCAGTGACACTCACCTAGA CAGCCTTGTGGGGCAAGCATTGTTTGGAGACGGAGCAGCTGCACTCATTGTTGGTTCCGATCCAGTGCTTGAAGTTGAGA AACCTTTGTTTGAGCTAGTTTGGACTGCACAAACTATTGCTCCGGATAGTGAAGGAGCCATTGATGGTCACCTACGTGAA GTTGGATTGACATTTCATCTCCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTTATTGAGGCCTT CCAACCACTAGGCATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTTTAGACCAAGTTG AGCAGAAGTTGGACTTGAAACCTGAAAAGATGAGGGCTACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGTGCA TGTGTCCTATTCATCTTAGATGAAATGAGAAAGAAATCAGCTCAAGATGAACTCAAAACCACCGGTGAAGGACTTGAATG GGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTGAAACAGTTGTTTTGCGTAGTGTGACCATTTAATATGCTTGA
CDS sequence (LotjaGi2g1v0122800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATATAAATTCCCTTATCCCCTCACAACTTTGCCAACCACAACGAACGACAACTCCTACTGCAAATAAGTGCCAATT AATTGAGCTCAATTTGCAGTGCTTCTTCCTTTGCTTCCCAAATATCTTTGCTTACAAACTTGATATCATCACCAACAAAA AGAATTTAAAGATGGTGAGTGTAGCTGAGATTCGCAAGGCTCAAAGAGCTGAAGGCCCAGCAACCATCTTCGCTATTGGC ACTGCAAACCCTCCTAACTGTGTTGATCAAAGCACTTACCCTGATTTCTACTTCAGAGTCACCAACAGTGAGCACAAAAC TGAGCTTAAGGAGAAGTTTCAGCGCATGTGTGACAAGTCTATGATCAAGAAGAGATACATGCACTTGACAGAAGATCTTT TGAAAGAGAACCCTAACATGTGCGCTTATATGGCACCTTCTCTGGATGCTAGGCAAGACATGGTGGTTGTAGAAGTACCT AGACTGGGTAAAGAAGCAGCAGTAAAGGCTATTAAAGAATGGGGTCAACCTAAGTCCAAGATTACCCACTTAATATTTTG CACCACAAGTGGTGTAGACATGCCCGGTGCTGATTATCAACTCACCAAACTCCTGGGTCTTCGCCCTTATGTGAAAAGGT ACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTCCGTTTGGCTAAGGACTTGGCTGAGAACAACAAAGGT GCGCGTGTGCTGGTTGTTTGTTCTGAACTTACTGCAGTTACCTTTCGTGGCCCCAGTGACACTCACCTAGACAGCCTTGT GGGGCAAGCATTGTTTGGAGACGGAGCAGCTGCACTCATTGTTGGTTCCGATCCAGTGCTTGAAGTTGAGAAACCTTTGT TTGAGCTAGTTTGGACTGCACAAACTATTGCTCCGGATAGTGAAGGAGCCATTGATGGTCACCTACGTGAAGTTGGATTG ACATTTCATCTCCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTTATTGAGGCCTTCCAACCACT AGGCATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTTTAGACCAAGTTGAGCAGAAGT TGGACTTGAAACCTGAAAAGATGAGGGCTACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGTGCATGTGTCCTA TTCATCTTAGATGAAATGAGAAAGAAATCAGCTCAAGATGAACTCAAAACCACCGGTGAAGGACTTGAATGGGGTGTGTT ATTCGGTTTTGGACCTGGACTTACCATTGAAACAGTTGTTTTGCGTAGTGTGACCATTTAA
Protein sequence (LotjaGi2g1v0122800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHINSLIPSQLCQPQRTTTPTANKCQLIELNLQCFFLCFPNIFAYKLDIITNKKNLKMVSVAEIRKAQRAEGPATIFAIG TANPPNCVDQSTYPDFYFRVTNSEHKTELKEKFQRMCDKSMIKKRYMHLTEDLLKENPNMCAYMAPSLDARQDMVVVEVP RLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKG ARVLVVCSELTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVLEVEKPLFELVWTAQTIAPDSEGAIDGHLREVGL TFHLLKDVPGIVSKNIEKALIEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLDLKPEKMRATREVLSEYGNMSSACVL FILDEMRKKSAQDELKTTGEGLEWGVLFGFGPGLTIETVVLRSVTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 50 | 292 | 243 | 3.7E-93 | ||
| SUPERFAMILY | 58 | 289 | 232 | 3.93E-80 | ||
| PANTHER | 59 | 445 | 387 | 4.0E-256 | – | |
| PANTHER | 59 | 445 | 387 | 4.0E-256 | ||
| Pfam | 63 | 285 | 223 | 2.7E-121 | ||
| CDD | 73 | 441 | 369 | 1.30197E-173 | – | |
| ProSitePatterns | 213 | 229 | 17 | - | ||
| SUPERFAMILY | 292 | 443 | 152 | 1.55E-51 | ||
| Gene3D | 293 | 446 | 154 | 1.0E-56 | ||
| Pfam | 295 | 445 | 151 | 3.1E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi2g1v0122800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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