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LotjaGi2g1v0122800.5

Overview

Field Value
Gene ID LotjaGi2g1v0122800
Transcript ID LotjaGi2g1v0122800.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|P30075|CHS4_MEDSA Chalcone synthase 4; TrEMBL-Plants: tr|I3T7A9|I3T7A9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0122800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:45158308..45159904) extracted from Lotus japonicus Gifu genome v1.2.

GTAAGCTCATTGACTGCTCAGACAACGAGTAAGCCATTGACCAAATCACCAAACAAGGAACGTGATGTTGAGCTACCACA CTCCAATTCCCTTTCCACTTCCACCTTCCCATACATGCATATAAATTCCCTTATCCCCTCACAACTTTGCCAACCACAAC GAACGACAACTCCTACTGCAAATAAGTGCCAATTAATTGAGCTCAATTTGCAGTGCTTCTTCCTTTGCTTCCCAAATATC TTTGCTTACAAACTTGATATCATCACCAACAAAAAGAATTTAAAGATGGTGAGTGTAGCTGAGATTCGCAAGGCTCAAAG AGCTGAAGGCCCAGCAACCATCTTCGCTATTGGCACTGCAAACCCTCCTAACTGTGTTGATCAAAGCACTTACCCTGATT TCTACTTCAGAGTCACCAACAGTGAGCACAAAACTGAGCTTAAGGAGAAGTTTCAGCGCATGTGTAAGCATTCTATGTTT TTCTATCTTGCTCCATTTTTTCTATATAACATTCATTTAGATTGCTAGACTAGTCATTATCAGATTGGCTTTGGTGTTTT CTTGATTATATTGTACTAATGTTACTTCTTTATAATTGATTTCAGGTGACAAGTCTATGATCAAGAAGAGATACATGCAC TTGACAGAAGATCTTTTGAAAGAGAACCCTAACATGTGCGCTTATATGGCACCTTCTCTGGATGCTAGGCAAGACATGGT GGTTGTAGAAGTACCTAGACTGGGTAAAGAAGCAGCAGTAAAGGCTATTAAAGAATGGGGTCAACCTAAGTCCAAGATTA CCCACTTAATATTTTGCACCACAAGTGGTGTAGACATGCCCGGTGCTGATTATCAACTCACCAAACTCCTGGGTCTTCGC CCTTATGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTCCGTTTGGCTAAGGACTTGGC TGAGAACAACAAAGGTGCGCGTGTGCTGGTTGTTTGTTCTGAACTTACTGCAGTTACCTTTCGTGGCCCCAGTGACACTC ACCTAGACAGCCTTGTGGGGCAAGCATTGTTTGGAGACGGAGCAGCTGCACTCATTGTTGGTTCCGATCCAGTGCTTGAA GTTGAGAAACCTTTGTTTGAGCTAGTTTGGACTGCACAAACTATTGCTCCGGATAGTGAAGGAGCCATTGATGGTCACCT ACGTGAAGTTGGATTGACATTTCATCTCCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTTATTG AGGCCTTCCAACCACTAGGCATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTTTAGAC CAAGTTGAGCAGAAGTTGGACTTGAAACCTGAAAAGATGAGGGCTACTAGAGAAGTGCTAAGTGAATATGGTAACATGTC AAGTGCATGTGTCCTATTCATCTTAGATGAAATGAGAAAGAAATCAGCTCAAGATGAACTCAAAACCACCGGTGAAGGAC TTGAATGGGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTGAAACAGTTGTTTTGCGTAGTGTGACCATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0122800.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATATAAATTCCCTTATCCCCTCACAACTTTGCCAACCACAACGAACGACAACTCCTACTGCAAATAAGTATATCAT CACCAACAAAAAGAATTTAAAGATGGTGAGTGTAGCTGAGATTCGCAAGGCTCAAAGAGCTGAAGGCCCAGCAACCATCT TCGCTATTGGCACTGCAAACCCTCCTAACTGTGTTGATCAAAGCACTTACCCTGATTTCTACTTCAGAGTCACCAACAGT GAGCACAAAACTGAGCTTAAGGAGAAGTTTCAGCGCATGTGTGACAAGTCTATGATCAAGAAGAGATACATGCACTTGAC AGAAGATCTTTTGAAAGAGAACCCTAACATGTGCGCTTATATGGCACCTTCTCTGGATGCTAGGCAAGACATGGTGGTTG TAGAAGTACCTAGACTGGGTAAAGAAGCAGCAGTAAAGGCTATTAAAGAATGGGGTCAACCTAAGTCCAAGATTACCCAC TTAATATTTTGCACCACAAGTGGTGTAGACATGCCCGGTGCTGATTATCAACTCACCAAACTCCTGGGTCTTCGCCCTTA TGTGAAAAGGTACATGATGTACCAACAAGGGTGCTTTGCAGGTGGCACGGTGCTCCGTTTGGCTAAGGACTTGGCTGAGA ACAACAAAGGTGCGCGTGTGCTGGTTGTTTGTTCTGAACTTACTGCAGTTACCTTTCGTGGCCCCAGTGACACTCACCTA GACAGCCTTGTGGGGCAAGCATTGTTTGGAGACGGAGCAGCTGCACTCATTGTTGGTTCCGATCCAGTGCTTGAAGTTGA GAAACCTTTGTTTGAGCTAGTTTGGACTGCACAAACTATTGCTCCGGATAGTGAAGGAGCCATTGATGGTCACCTACGTG AAGTTGGATTGACATTTCATCTCCTTAAAGATGTTCCTGGGATTGTTTCAAAGAACATTGAGAAAGCACTTATTGAGGCC TTCCAACCACTAGGCATATCTGATTACAACTCAATTTTTTGGATTGCACACCCAGGTGGCCCAGCAATTTTAGACCAAGT TGAGCAGAAGTTGGACTTGAAACCTGAAAAGATGAGGGCTACTAGAGAAGTGCTAAGTGAATATGGTAACATGTCAAGTG CATGTGTCCTATTCATCTTAGATGAAATGAGAAAGAAATCAGCTCAAGATGAACTCAAAACCACCGGTGAAGGACTTGAA TGGGGTGTGTTATTCGGTTTTGGACCTGGACTTACCATTGAAACAGTTGTTTTGCGTAGTGTGACCATTTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0122800.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHINSLIPSQLCQPQRTTTPTANKYIITNKKNLKMVSVAEIRKAQRAEGPATIFAIGTANPPNCVDQSTYPDFYFRVTNS EHKTELKEKFQRMCDKSMIKKRYMHLTEDLLKENPNMCAYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITH LIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSELTAVTFRGPSDTHL DSLVGQALFGDGAAALIVGSDPVLEVEKPLFELVWTAQTIAPDSEGAIDGHLREVGLTFHLLKDVPGIVSKNIEKALIEA FQPLGISDYNSIFWIAHPGGPAILDQVEQKLDLKPEKMRATREVLSEYGNMSSACVLFILDEMRKKSAQDELKTTGEGLE WGVLFGFGPGLTIETVVLRSVTI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.47.10
25 269 245 3.0E-93
IPR016039
SUPERFAMILY
SSF53901
35 266 232 3.4E-80
IPR016039
PANTHER
PTHR11877:SF62
36 422 387 3.3E-256 –
PIRSF
PIRSF000451
36 423 388 3.7E-138
IPR011141
PANTHER
PTHR11877
36 422 387 3.3E-256
IPR011141
Pfam
PF00195
40 262 223 2.3E-121
IPR001099
CDD
cd00831
50 418 369 5.54273E-174 –
ProSitePatterns
PS00441
190 206 17 -
IPR018088
SUPERFAMILY
SSF53901
269 420 152 1.38E-51
IPR016039
Gene3D
G3DSA:3.40.47.10
270 423 154 9.1E-57
IPR016039
Pfam
PF02797
272 422 151 2.7E-71
IPR012328

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016746
Molecular function Transferase activity, transferring acyl groups Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
Subterm of
GO:0016747
Molecular function Transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0122800.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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