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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0124100 |
| Transcript ID | LotjaGi2g1v0124100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|C6T824|C6T824_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0124100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45606969..45610369) extracted from Lotus japonicus Gifu genome v1.2.
CACCAAAGAGAACTGAAACCAGTCTCAAAGTTACAATCAAACTATGAAGTCGTGTCCAAAGCTTAGAAACTCCTATGTAA TTTTTTCTCTTTTTTTTTTCCATTGAGCTTTTCAGACATCTAAACGATGCTTTTCTTTTTATTCTTCTGAATGTGATTCG AGTTTGAGTATATCGAATGCACTTTTCTCTTTTCTTTTCCAGTATTTTAAAGAAAATTGTTTCTTGGTTTTGTTCAAAGA TCAATTTTGTGTCTTTTGCTTCAGTGTTTTTTTTACTCTAATTACCTTGTTCCATGACTAGAATTTTGTTTGGTTGATTC AAGTCATACATGCATAACCTAAGTAAGGGTCATTGTTAAATCATATGAATGAAAAATACAGTTGAACCCACAATGGTGTG AATGTTCCACGCATAACCGTGAAATAAAGTCAAATCAAATTTGTTATTCCTTGTCACAGGGTTCTAAATATTATAACAAT TTAATATATGAACATTATGCATCAATCATTTTAATCCCTAAATAATTGAAATTATCGATTGAAAACAATTTTTTGATTTG TGCAGGTTGCAGGGATTATTTTTGCAGTGGTGTTATTGGGGTCACTAGGAGTGAAGGTAGCAGAATGCAGAGTAGTCAGA AGATTACAGGATCTTGAGTACCCTGCTATCAACTGCAGAAAACATAGTGCAGTCTTGACTGATTTTGGTGGTGTTGGTGA TGGCAAAACATCTAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAGCCACTATGCAAATGATGGCGGGGCTATGC TGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACTAGCCATTTCACACTTTTTCTCCAAAAAGAGGCT GTCATTCTTGGATCTCAGGTATCTAGTCACCTTCTCCCCTTTTCCTGTGGTTAAATTGTTATATTATTTGGGTCTTTGAT TCATTGCATTCGGTGTGACCCTAATCGAAGCCAACAATATCTAATGGCTCAAAGGTTTTTTCAAGATCGGATGACTAATG TGGATCAAACGATTCAAATTTCTTATTTGCGTGAATTTACGATTTTATTCATTATGGTTACATAATTCCAATCCAATTAT AAAAAAAAACACCATGTTGATTTTGTGGTCAATCATGTGTTCTTCATATGAGATGTGAATGAGTAAAAAAAAAAGATAAA ATCCGATGTTGTTCTTGTGGCCAATCGCGTATTGTCTATATGAGGTGTGGAAAAAAAGTAAAAAAATTATAGTTGTTGAC TAATTGAATATGATTTCTTTTTCTTTCAAAAAAAAAAAGAATTTAATGGATATGCACTGTCAGTGTAAAATAGTTTTACA CTGACATCCAATTGAATTCCGCCAAATAAGCAAATGTGATTTTGTTTTAATTAAAATTAAAAATGAATGTAACTCTCTTT CCACGTGGCAAAAATTGATTTCTTTTGTGTATTACACATGTCCTTTGCATTCTATTTTACTATGAAAGTAGCATTTATCA AAAGCTATGTAGCATTCGTCAACACAGTGCAATTGATGGAAATTTATTTATCTAATCACATTTATCTCTAACCTATCTTT GATTTCTGGTCACGTTAGTTAAGCACCATTTGACATCAATTGTTAGTTTTTTTTAATTACTTTTCTCCTAAATAAACACT ACGATTGACCATTGACCAACTTTAACAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTCCATCATATGGCAGAGGAA GGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTTATTACTGGTAAAACTTCA AGGCCCATATACTATCATCACTATCAGAATTTGTTAATTCATTCCCCTTTGGAAAATCATTTTTAATTTCACATGTTTTG AATTTGTTCATTAGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTA CACTCACCAGGCCTTACATGATTGAGATTATGTACTCTAATCAAATTCAAATCTCGAATCTCACTTTGGTCAATTCCCCA TCTTGGTTTGTCCATCCAATTTACAGCAGGTTTGACAATGATCTTCATGGACCATATTTTCTGTTATGTTATTCTCATGT TCTTGTCTCACCTTTCTCTGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCTAACACAGA TGGAATTGATCCTGGTAATATTTATAACATTTCTATAATTATATTATATATATTTTATTTCCACTGGATTTCAATTTAGT CCTTAAAAGATGAAAAAAGGACAAAATCCATTTTAGATCTTGAAAGACTAACTGAAATTTGGTTTCATCTTTCGGCGACT AGTTTCCCTATTTTCTTAGCCCTGATAATTTTCAACGAGTAAAGTTACTATTCACTTAAATTTCAATCATTCTCTAACTA TTTTCCTCAATTTTGCAGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCA GTGAAAAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCAT ATCCCCAGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGACATTAGAGCAGAAGACCTCACTG CTATCAACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGA ATGAACTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAA AGCACTTCCTACCATCACTGGAATCAATTATAGAGATGTGATTGCGAAGAATGTCACATATCCTGCAAAGCTTGAAGGAA TTGCTAATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGC ACTGATGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTG TCCTTTTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGAG AGAATGAATGTATTTTAAATTTTGAATGTAATACAGTAATGATGCTATTGTTATCTATGAATGAGTTCTGAAAAAATTAA ATCAAATTTAGAGAGTAAACATGTGTTTTCCTTGGTACCATAATGTTGGTCGGGTTGGATTACCTATAATCGCTTATTTG AGCTTATGTTATACCATAAAGGCATAAACACTTATGCAAGT
CDS sequence (LotjaGi2g1v0124100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCGTGTCCAAAGCTTAGAAACTCCTATGTTGCAGGGATTATTTTTGCAGTGGTGTTATTGGGGTCACTAGGAGT GAAGGTAGCAGAATGCAGAGTAGTCAGAAGATTACAGGATCTTGAGTACCCTGCTATCAACTGCAGAAAACATAGTGCAG TCTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCTAACACCAAGGCCTTTCAATCTGCAATCAGCAATCTCAGC CACTATGCAAATGATGGCGGGGCTATGCTGGTGGTGCCACCAGGGAAATGGCTCACAGGAAGCTTTAATCTCACTAGCCA TTTCACACTTTTTCTCCAAAAAGAGGCTGTCATTCTTGGATCTCAGGTTGAATCAGAGTGGCCCTCACTTCCTGTTCTTC CATCATATGGCAGAGGAAGGGATGCACCTGCTGGAAGGTTCAGTAGTCTCATTTTTGGAACAAACCTCACTGATGTTGTT ATTACTGGTCACAATGGTACTATTGATGGGCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGACAATTTACACTCAC CAGGCCTTACATGATTGAGATTATGTACTCTAATCAAATTCAAATCTCGAATCTCACTTTGGTCAATTCCCCATCTTGGT TTGTCCATCCAATTTACAGCAGTGACATTATAATTCAAGGGCTGACCATTCTTGCACCAGTTGACTCTCCTAACACAGAT GGAATTGATCCTGATTCTTGTTCCAACACTAGGATTGAAGATTGCTATATTGTATCTGGTGATGATTGCATTGCAGTGAA AAGTGGTTGGGATGAGTATGGAATCAAAGTTGGGATGCCAAGCCAACACATAATAATCAGAAGACTTACATGCATATCCC CAGATAGTGCTATGATTGCTTTAGGAAGTGAAATGTCTGGTGGAATCCAAGACATTAGAGCAGAAGACCTCACTGCTATC AACACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAGAACATTTTTGTCAAAGGAATGAA CTTGTTCACCATGAAATATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACACTGGCTTTGATCCAAAAGCAC TTCCTACCATCACTGGAATCAATTATAGAGATGTGATTGCGAAGAATGTCACATATCCTGCAAAGCTTGAAGGAATTGCT AATGATCCTTTCACTGGAATTTGCATTTCTAATGCGAATATTGAGAAAGTGGGAAAGAAATTGGCATGGAATTGCACTGA TGTTCACGGTGTTACAAGCAATGTGTCTCCTGAGCCTTGTGCATTGCTGCAAGAGAAGCCTGGGAAATTTGACTGTCCTT TTCCAGCAGACAAACTTCCCATTGAAAGTGTTCAGCTGAAGACTTGTTCCTTTAAAAGTTTGTCACTCTTCTGA
Protein sequence (LotjaGi2g1v0124100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSCPKLRNSYVAGIIFAVVLLGSLGVKVAECRVVRRLQDLEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISNLS HYANDGGAMLVVPPGKWLTGSFNLTSHFTLFLQKEAVILGSQVESEWPSLPVLPSYGRGRDAPAGRFSSLIFGTNLTDVV ITGHNGTIDGQGSYWWDKFHKGQFTLTRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSDIIIQGLTILAPVDSPNTD GIDPDSCSNTRIEDCYIVSGDDCIAVKSGWDEYGIKVGMPSQHIIIRRLTCISPDSAMIALGSEMSGGIQDIRAEDLTAI NTQSAVRIKTAVGRGAYVKNIFVKGMNLFTMKYVFWMTGSYGSHPDTGFDPKALPTITGINYRDVIAKNVTYPAKLEGIA NDPFTGICISNANIEKVGKKLAWNCTDVHGVTSNVSPEPCALLQEKPGKFDCPFPADKLPIESVQLKTCSFKSLSLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 12 | 22 | 11 | - | – | |
| PANTHER | 19 | 472 | 454 | 5.0E-262 | – | |
| PANTHER | 19 | 472 | 454 | 5.0E-262 | – | |
| Phobius | 23 | 26 | 4 | - | – | |
| Phobius | 27 | 477 | 451 | - | – | |
| Gene3D | 36 | 439 | 404 | 1.8E-108 | ||
| SUPERFAMILY | 48 | 470 | 423 | 8.68E-101 | ||
| Pfam | 56 | 110 | 55 | 4.5E-7 | ||
| Pfam | 149 | 430 | 282 | 1.1E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0124100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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