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LotjaGi2g1v0125900.3

Overview

Field Value
Gene ID LotjaGi2g1v0125900
Transcript ID LotjaGi2g1v0125900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit beta type; TAIR: AT5G40580.1 20S proteasome beta subunit PBB2; Swiss-Prot: sp|Q7DLS1|PSB7B_ARATH Proteasome subunit beta type-7-B; TrEMBL-Plants: tr|I3STF0|I3STF0_LOTJA Proteasome subunit beta type; Found in the gene: LotjaGi2g1v0125900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:46123432..46125441) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTAAGACTGTGGATCTTCCTCCTAAGGGTGGCTTCAGTTTTGATAACTGCAGAAGAAATGCGATGCTTCAAAAGAA TGGCCTTAAGGGACCGTCGTTTTTGAAGACTGGGACGACTATTGTTGGTTTAGTATTTCAGGTCTGAATGAATGGCTTAT ACTTCATCTTATCTGCTTCTTGTTTTGTGTTCATATGCACCTTTTGTATGGCTAATTTGAAATTGAGTTCCCTTGTCTGC AGATTGTGTTCTTATGAAATGGTCCTGTGTACTAAGAGATAGTGTGTAGTATTATAGCTTTCTGTTAGCTTATCGTTAAT GTGGTAACCCCTCTTTCTATTACTGTTAGTATTAGGGTCGGAACCAAGTACATTGAAAATGGGGTAGTCGCCTATAAATT TCCTTCATAGAATGGTATTCAAATGATGTGTTTTCCACCCCTTAAAAATTTAGACTACCTACTCCTATAAGCTATTGTTG GTTTAGTTTAATGTGTTAAATTTTTGCTCCCTGCGCCTTTTTTCTGGTTCTGTCCCTGACTATCATATAGTTTTGACGTT TCCTACGTAATAAATTTGCCTCAGGATGGTGTAATTCTAGGAGCAGATACTAGAGCAACTGAAGGACCCATAGTTGCTGA TAAAAACTGTGAGAAAATTCACTATATGGCACCCAACATATATTGTTGTGGTGCAGGAACTGCTGCTGATACAGAGGCTG TAACAGGTATATTTTGAAATGCATCTTATTACGTTATTACTTCATGCCTTGTGCATAGTTGAATATGGATGTTGTTTAGG TTTTGGTCTTGTAATATGGTCATACTACTGAAAATGAGTCGTATTTACTGCAGATATGGTTAGCTCACAACTGCAACTTC ATCGCTACCATACTGGTCGAGAATCAAGAGTTGTTACAGCACTGACCCTTCTTAAGAGACACCTCTTCAAGTTGAGTTTT AGACTTTACATCTCAAGTGAATTTGCTCTTTGTATCAAACACTGATTCTGATCTGACTCTTAAAATTATTCTGCAGCTAC CAAGGTCATGTCTCAGCTGCCTTAGTTCTTGGTGGAGTTGATATTACTGGCCCTCATTTGCATACTGTTAGTTCATTGCC TAAAATTTTCATTTATACTTAATTTTCCTTGTTTTGAATGCATATAATTTGATTCTCATGACTATTTATGACATTTTGTG CAGATTTATCCACATGGTTCAACTGACACTCTCCCGTTTGCCACCATGGGTTCCGGTTCACTTGCTGCAATGTCTGTATT TGAGTCTAAATACAAGGAAAGCTTGACTGTAAGTGATCAATATTAAGGCTCAGAAATCATGTTCTCTTCAATATATCTCT TCAGAAAATAATTATGAGGAATGATGCCGTTGAAACTTTCTAGACATGTATATCTCTTAGGATTCTTTCAACTGTTACTT AAACCTGTTTTTAAAATGAAACTAATATGTCAATTGAGTCTCAATATCAAGAGGTGCATTGTAATTGTTATAATTGATGA TACTGGTTGTGTTTGTAGCTTAAGTCTGTATAAATGTTAACATTCTGGTGTGGTGCAGAGGGATGAAGGAGTAAAAATAG TTGTCGAGGCAATATGTGCTGGTGTGTTTAATGACTTGGGAAGTGGAAGTAATGTTGATGTTTGTGTGATAACGAAGGTT AGTGCATTGAAACCCAATACTAAAAGTTATTGTTTGAGGGGGGTGAATCTAACTTTTTCTATGCAAATTCTTCACTTTTT ATTCACAGGGACATAAGGAATATCTCAGGAATCACCTCACGCCAAATCCTCGTACATATGTCAATCCAAAAGGCTTTACT TTCAGCAAAAAGACTGGTCTGTTACGAACTATGCTAATTCACATGAGACCACAATAAACCAAATTATTCTTTTTTGGCTT AGAATTGTGTCATTATTTGCAGTCATGTTTGCATTTAAAATCTTCTCACCATCTGAAAAATTTGACAATCTTGGGAATAT GATGTTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0125900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTAAGACTGTGGATCTTCCTCCTAAGGGTGGCTTCAGTTTTGATAACTGCAGAAGAAATGCGATGCTTCAAAAGAA TGGCCTTAAGGGACCGTCGTTTTTGAAGACTGGGACGACTATTGTTGGTTTAGTATTTCAGGATGGTGTAATTCTAGGAG CAGATACTAGAGCAACTGAAGGACCCATAGTTGCTGATAAAAACTGTGAGAAAATTCACTATATGGCACCCAACATATAT TGTTGTGGTGCAGGAACTGCTGCTGATACAGAGGCTGTAACAGATATGGTTAGCTCACAACTGCAACTTCATCGCTACCA TACTGGTCGAGAATCAAGAGTTGTTACAGCACTGACCCTTCTTAAGAGACACCTCTTCAACTACCAAGGTCATGTCTCAG CTGCCTTAGTTCTTGGTGGAGTTGATATTACTGGCCCTCATTTGCATACTATTTATCCACATGGTTCAACTGACACTCTC CCGTTTGCCACCATGGGTTCCGGTTCACTTGCTGCAATGTCTGTATTTGAGTCTAAATACAAGGAAAGCTTGACTAGGGA TGAAGGAGTAAAAATAGTTGTCGAGGCAATATGTGCTGGTGTGTTTAATGACTTGGGAAGTGGAAGTAATGTTGATGTTT GTGTGATAACGAAGGGACATAAGGAATATCTCAGGAATCACCTCACGCCAAATCCTCGTACATATGTCAATCCAAAAGGC TTTACTTTCAGCAAAAAGACTGTCATGTTTGCATTTAAAATCTTCTCACCATCTGAAAAATTTGACAATCTTGGGAATAT GATGTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0125900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSKTVDLPPKGGFSFDNCRRNAMLQKNGLKGPSFLKTGTTIVGLVFQDGVILGADTRATEGPIVADKNCEKIHYMAPNIY CCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKRHLFNYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTL PFATMGSGSLAAMSVFESKYKESLTRDEGVKIVVEAICAGVFNDLGSGSNVDVCVITKGHKEYLRNHLTPNPRTYVNPKG FTFSKKTVMFAFKIFSPSEKFDNLGNMML
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF56235
11 227 217 4.07E-63
IPR029055
PANTHER
PTHR11599
23 248 226 3.7E-139 –
PANTHER
PTHR11599:SF128
23 248 226 3.7E-139 –
Pfam
PF00227
36 216 181 2.5E-47
IPR001353
ProSiteProfiles
PS51476
38 216 179 49.859
IPR023333
CDD
cd03763
39 227 189 1.25683E-136 –
Gene3D
G3DSA:3.60.20.10
39 259 221 2.1E-72
IPR029055
ProSitePatterns
PS00854
42 89 48 -
IPR016050
PRINTS
PR00141
46 61 16 5.0E-9
IPR000243
PRINTS
PR00141
166 177 12 5.0E-9
IPR000243
PRINTS
PR00141
177 188 12 5.0E-9
IPR000243
PRINTS
PR00141
202 213 12 5.0E-9
IPR000243

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0125900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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