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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0131000 |
| Transcript ID | LotjaGi2g1v0131000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151RUP0|A0A151RUP0_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi2g1v0131000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47538734..47542935) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAGTTATCAGGGCTTATACTATCAGACCTAATACTATCAGGTCTTATACTATACATTGTATAACAAGTTTGTTAGC AAGGGTAGATAGGTAATTGTACACAATACTTGTACTATATATACTGTGACCAACACAGAGTTGTAGTCACCCATTATTCT CATAAGTGAATCAATTACAGTTTCTCTCTCTCTCCTCTCTCTTTCAGTTTTCTATCTGTTATGGTATCCAGAGCCTAGTC TCTCACCGGTGATATGGCTCCACACCGTCACCACCGACTACTCCACCGCCACCGATTTCACCGCTGTCACCACCGCACTC AGATCCTGTACAATCGCTTGATGCGATGCCTCTGTTCTCTTCGAAACACCATTCTCTATCGCATGTCATCACAGAGAAGC TTAACGACAAAAATTTCCTGCTCTGGAAGCAGCAGGTTGAGCCAATCATCATCGCGCATCAATTGAGCTCGTTTCTTGAA GATCCAGTCATTCCACCACGTTTCGCGAGTGAAGCTGATCGCGTTTCAGCGATTGTCAGCAATAGCTACCGTCGATGGGA ACGGCATGATGCGTTCCTACGCTCATGGCTTCAGACTACTCTTTCTGCTCCAGTTCTTACGAAGATGATCGGGTGTCATC ATTCGTACCAGTTATGGAACAAGATTCATGCCAACAATCAGTCGCAAATTCATGCCAAATCGCGCCAATTACGTTCTGAG TTGCGCAATTCAACTCTAGGTAATCGTTCAATTGATGAATTTATGTCTCATGTCAAATCAATTTCGGATTCCTTGGCCTC TGTTGGAGATCCAGTTAGTTTGCGTGAACAATTGGATGTTGTTCTTGATGCACTTCCATCAGAATATGAATCTTTTGTCA CTATGGTGAATATGAATACTAGTTTTCAGAATATGGATCTCAGCGATGTTGAGCCTTTGCTTTTGGCACATGAGGCACGA GTAGCAAAGACTAAGAAAGCCTCCACTGATTTCTCTGTCAATCTTACACATTCAGCGCCAATTACTCAGTCTTCTACTGA TTCAGACACATATAAGCCTGAATATTCTGCTCCTCAACAGCCAGCAACTGGTTACCAGTCAGATTCACAAAGCAATTCCA GAAATGATCGCAATAACAAAGGTGGTGGTTGTGGACGTGGTAGAGGTGCCATCTGGTATCAAGTTTGCAACAAAAGAGGT CATTCAGTATCCATTTTCTTTCACAGATATAATCCTTCCTATGTTCCCAGACCACCACAGTATGCTTCTCAGGATCCTCA GGCACAGTATGCTTCTCAGCATTCTCCTGCTGCTTATGGACCTCCAGCTTCCTCTTGGAACTCTCAAGGATCCTGGCCTC AGTCATATCCTAGGCCTCCAGGTTACCCTCCACAGCATTCACAGTGGAACTACTCAGCACCTTGGTTTCCAAGCCCTCCA TTCTCTACTGCTGCTGCTAGGCCTACTTCGTCTCAGGCATCATCACAAGCACCTTCCTCTGCCTCAGTTCAGAATGCTTA GGCTTACATGACACACACACCAGCAGCAGGCTTAGTTGCCTCTTGGTACCCAGATTCAGGGGCCTCACATCATGTTACAC CTCATGGCAACAATATTCAATATCCAGATCCCTTTGAAGGGCCTGATCACATCTTTGTAGGAAATGGCCAGGGCTTGTCA GTTGCTTCTAGTGGTTCTACTCTATTCCCTTCTCCTTTAAATTCTAGAGTTACATTGTCTTTAACCAAGCTATTGCATGT TCCACAAATCACTAAAAATCTGCTTAGTGTTAGCAAATTTGCTAAAGATAATGGAGTCTTTTTTGAATTTCATCCTAACA CATGTTCTGTCAAATCTCAGGCTTCTCACCAAGTCCTTCTCCAAGGCCATGTGGGAGCTGATGGTTTATACTCCTTTCCT GGCTTACTTGCTTCTCTTTCCAGTGTTGATAGATCTCCATCTTTCGACATTGTCAATACCATAACTACTACTACTACTAA TAAGTTCCTAATCTGGCATAGCAGGTTAGGTCATCCTCACAAGGATGCTTTGCAAGCTGTTCTTCAATCTTGTAATATTC ATTTGTCTTCTAGAGATATGACTGATTTCTGTTATGCTTGTTGTTTAGGCAAGTCACATATACTGCCTAGTTCTCTTTCT ACTAGTGTGTATTCCTTTCCTCTTGAATTAGTACATTGTGATTTGTGGGGTCCAGCCCCTTGTGTATCCACTAATGGTTT TAAATACTATTTGTCTTTTGTTGATGCCTATACCCGTTTTACTCGGATATATTTTTTTAAGGAAAAATTTGAAACTCTAT CTGTTTTTCAACAATTTAAGCTCATGGCTGAATTGCAATATAACCATAAAATTAAAGCCATTCAATCTGATTGGGGAGGT GAATTCAGACCAGTTTCTACCTTTCATAAAACCCAAGGTATTCAACATAGAGTCATTTGTCCTCATACACACCACCAAAA TGGTGTTGTAGAAAGGAAACATAGACACATTGTTGATTTGGGCCTCACCCTCTTAGCTCATGCATCCATGCCTCTTGTTT ATTGGGATCATGCATTCCTTGCATCTGTGTATCTCATAAACAGATTACCCTCTAAGTCTATTCAAAATTCAGTCCTATAC TGCTTACTTTTTAAAAGACCACCTAATTACCATTTTTTAAGAGTGTTTGCATGTTCCTGCTCTCCACTTATTAAACCATA TAATGCTCATAAGTTTGCCTTTAGGTCTCAAGAGTGCCTTTTCTTGGGCTACTCTCCCTCTCATAAAGGTTATAAATGCC TTACTCCTGAGGGAAAACTACTGATTTCTAAAGATGTAGTTTTCTATAAGACTCATTTTCCTTATCCCACACTTTTTTCC TTCTGTTTCTGGTTCACCTTCCCTAATTCTTTCTACACCAGTACCATCCTTTATTCCTATTTGTCCATCCATACAAACAC CCCCACCACCTGATTCTTCTCCACCTTCTTCTTTTCAAGAGCCTTCCCTTCCTTCCCCATCACCCACTACCCCAACTTCC CAGTCATCTGTTTCTGAACCACTTCATTCTTCTCCCACTGTTTCAGTATCACCTGCCCCTGCACCACCACAACCTTCTCT TAATACCCATCCTATGATAACTAGATCCAAAAATGGTATTGTACAACCTAGGATCAATCCTTCAGTCGTTCTTACACATA CAGAACCTACTAGTGTCAAGCAAGCCATGGCCAGTCCTCTTTGGCATAAAGCTATGGAGGAAGAGTACAATGATTTACTC AAGAATCAGACTTGGTCTCTTGTTCCTTTACCTCCTAACAGAACCTCAATTGGATGCAAATGGGTGTTTAGGACCAAGGA AAATCCTGATGGTTCAATAAATAAATACAAGGCCAGACTTGTGGCCAAGGGCTTCCATCAACAACCTGGTTTTGACTACA CTGGGACTTTCTCACCCGTAGTAAAACCAGTCACCATAAGGGTTATTCTAACCTTGGCTCTTACTCATGGATGGCAGCTT AAGCAAATTGATGTGAACAATGCATTTTTGAATGGTTTTCTTCAAGAAGAGGTCTACATGGACCAGCCCCCTGGCTTCCA ATCAGCAGACAAATCCCCTATGTGCAGGCTCCATAAGGCTTTATATGGCCTCAAACAAGCTCCCCGAGCTTGGTTTGAAA GGCTCCACTCAGCTCTCCTTCATCTCAAGTTAGACTAAGCAAGTGTGATCCCTCACTTTTCATCTACACTCAAGATGGTG CTGTTGTATATCTTTTGGTTTATGTAGATGATATCATCTTAACTGGGAATTCCTCCTTTCTTATTCAACAGTTTATTGAT CAACTTGATGCACATTTTTCTTTGAAACAACTAGGTGATCTTCATTATTTTCTTGGGGTGGAAGTCCAGCCGCTTAAGGA TGGTTCTTTGTTACTCACTCAGAAGAAGTACATTAGAGATCTTCTTGCTAAGACTCTGATGACTGACTGCAATCCTCTTT CCACACCAATGGTTAGCACTTCAAGGCTGTCCAAGCATCAAGGGAATCCCTTTTCTGATCCAACTTGTTCCATCCTGAAC AATGAGATGAGGTACAGTACCTAAGATGCAAGGAACGTGATGCGAGATTTCTAGAGAGAAGTGAGAGTGTAACTGTAACA CCCCAATTCTAAACGGTATATGTATTGCAAATATCAGAGTGA
CDS sequence (LotjaGi2g1v0131000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCTGTTCTCTTCGAAACACCATTCTCTATCGCATGTCATCACAGAGAAGCTTAACGACAAAAATTTCCTGCTCTG GAAGCAGCAGGTTGAGCCAATCATCATCGCGCATCAATTGAGCTCGTTTCTTGAAGATCCAGTCATTCCACCACGTTTCG CGAGTGAAGCTGATCGCGTTTCAGCGATTGTCAGCAATAGCTACCGTCGATGGGAACGGCATGATGCGTTCCTACGCTCA TGGCTTCAGACTACTCTTTCTGCTCCAGTTCTTACGAAGATGATCGGGTGTCATCATTCGTACCAGTTATGGAACAAGAT TCATGCCAACAATCAGTCGCAAATTCATGCCAAATCGCGCCAATTACGTTCTGAGTTGCGCAATTCAACTCTAGGTAATC GTTCAATTGATGAATTTATGTCTCATGTCAAATCAATTTCGGATTCCTTGGCCTCTGTTGGAGATCCAGTTAGTTTGCGT GAACAATTGGATGTTGTTCTTGATGCACTTCCATCAGAATATGAATCTTTTGTCACTATGGTGAATATGAATACTAGTTT TCAGAATATGGATCTCAGCGATGTTGAGCCTTTGCTTTTGGCACATGAGGCACGAGTAGCAAAGACTAAGAAAGCCTCCA CTGATTTCTCTGTCAATCTTACACATTCAGCGCCAATTACTCAGTCTTCTACTGATTCAGACACATATAAGCCTGAATAT TCTGCTCCTCAACAGCCAGCAACTGGTTACCAGTCAGATTCACAAAGCAATTCCAGAAATGATCGCAATAACAAAGGTGG TGGTTGTGGACGTGGTAGAGGTGCCATCTGGTATCAAGTTTGCAACAAAAGAGGTCATTCAGTATCCATTTTCTTTCACA GATATAATCCTTCCTATGTTCCCAGACCACCACAGTATGCTTCTCAGGATCCTCAGGCACAGTATGCTTCTCAGCATTCT CCTGCTGCTTATGGACCTCCAGCTTCCTCTTGGAACTCTCAAGGATCCTGGCCTCAGTCATATCCTAGGCCTCCAGGTTA CCCTCCACAGCATTCACAGTGGAACTACTCAGCACCTTGGTTTCCAAGCCCTCCATTCTCTACTGCTGCTGCTAGGCCTA CTTCGTCTCAGGCATCATCACAAGCACCTTCCTCTGCCTCAGTTCAGAATGCTTAG
Protein sequence (LotjaGi2g1v0131000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLFSSKHHSLSHVITEKLNDKNFLLWKQQVEPIIIAHQLSSFLEDPVIPPRFASEADRVSAIVSNSYRRWERHDAFLRS WLQTTLSAPVLTKMIGCHHSYQLWNKIHANNQSQIHAKSRQLRSELRNSTLGNRSIDEFMSHVKSISDSLASVGDPVSLR EQLDVVLDALPSEYESFVTMVNMNTSFQNMDLSDVEPLLLAHEARVAKTKKASTDFSVNLTHSAPITQSSTDSDTYKPEY SAPQQPATGYQSDSQSNSRNDRNNKGGGCGRGRGAIWYQVCNKRGHSVSIFFHRYNPSYVPRPPQYASQDPQAQYASQHS PAAYGPPASSWNSQGSWPQSYPRPPGYPPQHSQWNYSAPWFPSPPFSTAAARPTSSQASSQAPSSASVQNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 358 | 350 | 2.9E-63 | – | |
| PANTHER | 9 | 358 | 350 | 2.9E-63 | – | |
| Pfam | 71 | 205 | 135 | 4.6E-15 | – | |
| MobiDBLite | 225 | 264 | 40 | - | – | |
| MobiDBLite | 225 | 269 | 45 | - | – | |
| MobiDBLite | 302 | 354 | 53 | - | – | |
| MobiDBLite | 302 | 340 | 39 | - | – | |
| MobiDBLite | 367 | 391 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0131000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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