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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0132000 |
| Transcript ID | LotjaGi2g1v0132000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Accelerated cell death 6; TAIR: AT4G03500.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q8LPS2|ACD6_ARATH Protein ACCELERATED CELL DEATH 6; TrEMBL-Plants: tr|A0A0L9UIN2|A0A0L9UIN2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47925683..47928314) extracted from Lotus japonicus Gifu genome v1.2.
AAATAACCTAACTAGCAAAAGCTAGCAAGCACGCAAAGGTGCTTTAAACCCCTAAAGTCATAGAATAAACCCCACTAGAA AAGACCCAATAAAGTCGAAAAACAGCAACAAGTCAAATGAAGTTGTTCGACACCTACAACAACGAGATTCATCCTAGACG ATCAAAACAAACGAACTAGAAGCAAAACAATCAACCAACACCCACGCCACCAAGGTCTCAAGTCAAGGTCCAAAGCCGCG CTTAAAAATCACTTGGAATAAAACATAAACACAGCCAGAGCTCCTTCCATAACAAAATGTCTCGAAAGGCAGGCTGATCG ACATACCAATATAGCAAAAGTCCAAGGCATCTTCAAGCAAGAAAGAACGCAAATAACCATCACTGCACAAAGAAAGCCAC ACTCTTCAAGCCAACCAGCCACATAACAATCACCCTCAACCCCTCGAACACCACTCCAGCCACCGACGCTGATGGAGACT GAGCCCAACGGTAACCCACAGGCCAAAAACCACGAGGAAACCCCATGGCGGCGCGCCAAAAGCACCGAAACAGATCTGAA AACCCACAGGGCCGCAAACCAACAACCACAGATCTGTCGGGAACGAGGTGGGTCACCGAAGAGACAAAGAGGCACCGACG ACTGGAACTGGAGGGGCGTGAAAACACGAGGACGAGGAGAAGCCGAACAGGAAAGGGAGACGCCACCGGAACAAACCCAG AACTGGCCTCACCAAGCAATCACAGATCCGCGGCCGAGGAACGGCGAGGTTCCGGCGGAGGCAAAGTGAGCTCCAAAGAG ACGGCTCTAGAACTCCAAACCGAGCAGGGCCCGACGCCACCACACAACGCCGCAAGAATTCCGAAACCCATCAACGAAGG GGTCGCCGAACTGAGATAGGAAGGCAAGGATCTGGGCAGATCTGGCCCAATAGGCAAGCACATATCTGGCAAACAACTCA CCGGCGACGACCACGAAAGCAAGGCGAGGCGGCGGCGGGGAAAAGACAGAGGCACTGAACTGAGAGGAGAGGTGACAGCG GGATAAGGGAGAGAGGAAGCTCAGTTATTCAGCCATGGAGAAGAAGAAAAACAAAAGGAAGTAAAGGGAGGGGATGTGGC AGGTATTTTAGATACTATATTGACAGAAAAGCCAAAATGGATCCATTTAATGGATACCGAAGAAAGGATTCCTCTACATT ATGCAGCATCAATAGGCTATCTTAAAGGTGTTCAGGACCTACTTGACAAATGTGCTTCCTGCGTCATGGAAAGGGACATA CATGGATATTTGCCAATTCATTTGGCAGCTTATGCTGGCCACGTTACAATAGTTCAAGAATTGCTGAAATCAAAGTACTG CCCCGATCCAAGAGAGATAGTTCACAAGGATGGCCGAAATATTCTTCATCTTGCAGCTCAAAGTGGAAAGTTTAATGTGG TAAAGTACATCATGCAGGCTTCTGATAATGGACTTCAAAAGATGATAAATGAACAGGATTATAATGGAAACACTCCTTTG CATTTGGCTACCTTGTGTTGTCATCCCAGGATAGTGCATTCCTTGACATGGGACAAGAGAGTGAATCCCTGTGTGGTTAA CAAAGATGGTCAAACAGCTCTTGATGCATTTGAGATATCTAGCAATCCGCCCCTTAGAGAGGCAAGTAACATACATACAC AATTTCAAAACGTGAATGATTATTACTTGTCTATGTCTTAGACTATTTCTTTATTTATCCTTTAATGTTGAAGGTTTGTA ACACAATTTTATTTACAGCAACTAACATGGATAGCATTAAAATCAGTTGTTCCACAACCTGTTGAGCCAAAGTCAATGGC CATCAAGGTCCCTCCAGAAAGTACATATAAATTTATGCAACAAGAGGGCCCAGACATGGAACCGTTCAAAGACAGAATCA ACACACTTATAGTGGTTTCAACCCTTATAATTACAGCAACATTCGCCACAGGTTTCGCTTTGCCCGGGGGTATATTAATG GCTCAGGTGATCCAGGGCCAGGTATGGCTGTGCTGCTACATCACATATGGTTTAAAATATTCATCTTTTGCAATACAATA TCAATGTATGGTGCAATTAGTGTTACTATCATTCTCATTTGGGCCCAGCTGGGAGATATAACTTTGGCAATTCATGCGCT TAAAGTGGCAAAGCCTCTTCTGGGAATAACTCTTGGGACACTGTCTCTGTCATTTTTAGCTGGGGTGCACCTAGTTATAA GGGATCTCACTTGGCTAGACACTTCTTTCTTGGCCATGGGTTTGCTTTTCATCTTGGTGCTGTTGTTGTTGTACACTATG CTCTGGTTCCCCTCATCAACAAGCAATCTAGTTGTCAGATATGTATCCTACTACCCCTTCCTGCTGTTGGCTTCATTGGT TGACAAACATGGAGATTAGTTCTAAAATTAGGCATAAAAAATATGTTACCTGGCTATATAGCCAGTTTTATTTTTATTTT TAGTTTGTTTCCAGCACTACAACATTTTATGGTTCTAGCAACATTTCTTTTTTCATTAAGGGTAAACTGTCGCCTAAAAA TGTAAAAAGCCAATCATTTTGAAGTCATATTTTTGTCTATTTTGTAAATTATATGGATCAACATGTCATAAC
CDS sequence (LotjaGi2g1v0132000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGCTGCTACATCACATATGGTTTAAAATATTCATCTTTTGCAATACAATATCAATGTATGGTGCAATTAGTGT TACTATCATTCTCATTTGGGCCCAGCTGGGAGATATAACTTTGGCAATTCATGCGCTTAAAGTGGCAAAGCCTCTTCTGG GAATAACTCTTGGGACACTGTCTCTGTCATTTTTAGCTGGGGTGCACCTAGTTATAAGGGATCTCACTTGGCTAGACACT TCTTTCTTGGCCATGGGTTTGCTTTTCATCTTGGTGCTGTTGTTGTTGTACACTATGCTCTGGTTCCCCTCATCAACAAG CAATCTAGTTGTCAGATATGTATCCTACTACCCCTTCCTGCTGTTGGCTTCATTGGTTGACAAACATGGAGATTAG
Protein sequence (LotjaGi2g1v0132000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVLLHHIWFKIFIFCNTISMYGAISVTIILIWAQLGDITLAIHALKVAKPLLGITLGTLSLSFLAGVHLVIRDLTWLDT SFLAMGLLFILVLLLLYTMLWFPSSTSNLVVRYVSYYPFLLLASLVDKHGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 117 | 117 | 5.0E-14 | – | |
| PANTHER | 1 | 117 | 117 | 5.0E-14 | – | |
| Pfam | 2 | 70 | 69 | 2.3E-8 | ||
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 12 | 36 | 25 | - | – | |
| Phobius | 37 | 47 | 11 | - | – | |
| Phobius | 48 | 70 | 23 | - | – | |
| TMHMM | 54 | 73 | 20 | - | – | |
| Phobius | 71 | 81 | 11 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 82 | 103 | 22 | - | – | |
| Phobius | 104 | 108 | 5 | - | – | |
| Phobius | 109 | 126 | 18 | - | – | |
| Phobius | 127 | 131 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0132000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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