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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0137300 |
| Transcript ID | LotjaGi2g1v0137300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142; TrEMBL-Plants: tr|V7C596|V7C596_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0137300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50186959..50188965) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTGTCTCGAAACATTTCCAAATTGCAAGCATTGGTTTCTTCATTCCAAAAATCACTAGCATCCTTTCAGAGCCCAGT TATTGCTGTGGAACTTCTGGGCAAAGCACTAGACCAATACCCAGATATTATAGCCTTGAAAAATGTCCACACCAAGCTTA TTTATCTCAATTCTCATGAAAACCCATCTCTGGGAATCAAACTCATGAGAGCCTATGCTGCCTGTGGAGAACCAGGGACG GCACGCAAGGTGTTCGATGAAATTCCTGAGAGGAATGTTGTTTTCTACAATGTCATGATCAGAAGCTATGTGAATAATCG TTGGTATAATGACGCGTTGCTTGTTTTCAGAGAGATGGTTAATGGTGGGTTTAGACCGGACAATTATACCTACCCTTGTG TCCTGAAGGCGTGCTCTTGCTCTGACAATTTGAGGTTTGGGTTGCAGCTTCATGGAGCTATGTTGAAGGTTAGGCTGGAT TGGAATTTGTTTGTCGGGAACGGTCTCATTTCTATGTACGGGAAATGTGGTTGCTTGCTGGAGGCAAGGTATGTTCTTGA TGAGATGCCGAGGAGGGATGTTGTGTCGTGGAACTCAATGGTTGCAGGCTATGCGCAGAATATGCGGTTTGATGATGCAT TGGAAGTTTGTCGGGAAATGGATGATTTGGGACAAAAACCTGATGCTGGTACAATGGCGAGTCTCATGCCAGCAGTAACT AACACTTCGTCGGACAATGTTTTGTATGTTAAGGATATTTTTATAAATTTGGAGAAGAAGAGTTTGGTCTCGTGGAATGT GATGATAACTGTCTATATGAAAAATTCCATGCCGGGAAATGCTATAGATTTGTATTTGCAAATGGAGAAAAGTGAAGTCG AGCCAGATGCAATCACTTGTGCTAGTGTTCTTCCAGCATGTGGTGATCTTTCAGCTTTGTTGTTAGGAAGGAGGATTCAC GAATATGTTGAGAGGAAGAAACTACGTCCGAATTTGCTGCTGGAAAATTCATTGATAGACATGTACGCTAGGTGCGGATG TCTAGAAGATGCACAAAAGGTCTTTGACAAAATGAAGTTTCGTGATGTTGCATCGTGGACATCATTGATATCTGCCTATG GTATGACTGGGCAAGGCTGCAATGCTTTGGCACTTTTCTCAGAAATGCAAAATTCAGGTATAAGTCCAGATCATATCGCC TTTGTCGCAATTCTCTCAGCTTGTAGCCATTCAGGATTATTGGAAGAAGGGAAAGTTTACTTTAAGCAGATGACTGATGA TTACAGAATAACACCAAGAATTGAACACTTTGCGTGCTTGGTAGATCTTTTAGGACGTGCTGGGCGAGTAGATGAGGCCT ATGATGTCATCAAACAGATGCCATTAGAACCTAATGAAAGAGTTTGGGGGACACTACTTAGTTCTTGCAGGGTGTACTCC AACATGGATATTGGCCTCTTAGCAGCTGACAACCTACTTCAGTTGTCTCCTGAGCAATCAGGTTATTATGTGTTGTTATC TAATATTTACGCAAAGGCCGGTAGATGGAAAGAAGTAACAGAAGTTAGATCATTAATGAAGAGAAGAAGAATTCGGAAAA CGCCCGGCATCAGCAATGTTGAGCTGAACAGTCAGGTTCACACATTTCTCGCCGGTGACACGTCGCATCCGCAGTCAAAG GAGATCTATGAAGAGCTATATGTGCTGGTGGGAAAGATGAAGGAGTTGGGTTATGTTCCTGAAACTGATTCTGCACTTCA TGATGTGGAGGAGGAGGATAAGGAAGGCCATCTAGCTGTTCACAGTGAAAAGCTAGCTATTGTGTTTGCTCTTTTGAATA CCCATGAGTCTCCGATCAGAATTACCAAAAACCTTCGTGTTTGTGGAGATTGCCATATTGCTGCTAAGCTTATCTCCAAG ATAGTTGGACGTGAAATTGTTATTAGGGACACCAATCGATTCCACCATTTTAAGGATGGCTTATGCTCATGTGGTGATTA TTGGTGA
CDS sequence (LotjaGi2g1v0137300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCCTATGCTGCCTGTGGAGAACCAGGGACGGCACGCAAGGTGTTCGATGAAATTCCTGAGAGGAATGTTGTTTT CTACAATGTCATGATCAGAAGCTATGTGAATAATCGTTGGTATAATGACGCGTTGCTTGTTTTCAGAGAGATGCTTCATG GAGCTATGTTGAAGGTTAGGCTGGATTGGAATTTGTTTGTCGGGAACGGTCTCATTTCTATGTACGGGAAATGTGGTTGC TTGCTGGAGGCAAGGTATGTTCTTGATGAGATGCCGAGGAGGGATGTTGTGTCGTGGAACTCAATGGTTGCAGGCTATGC GCAGAATATGCGGTTTGATGATGCATTGGAAGTTTGTCGGGAAATGGATGATTTGGGACAAAAACCTGATGCTGGTACAA TGGCGAGTCTCATGCCAGCAGTAACTAACACTTCGTCGGACAATGTTTTGTATGTTAAGGATATTTTTATAAATTTGGAG AAGAAGAGTTTGGTCTCGTGGAATGTGATGATAACTGTCTATATGAAAAATTCCATGCCGGGAAATGCTATAGATTTGTA TTTGCAAATGGAGAAAAGTGAAGTCGAGCCAGATGCAATCACTTGTGCTAGTGTTCTTCCAGCATGTGGTGATCTTTCAG CTTTGTTGTTAGGAAGGAGGATTCACGAATATGTTGAGAGGAAGAAACTACGTCCGAATTTGCTGCTGGAAAATTCATTG ATAGACATGTACGCTAGGTGCGGATGTCTAGAAGATGCACAAAAGGTCTTTGACAAAATGAAGTTTCGTGATGTTGCATC GTGGACATCATTGATATCTGCCTATGGTATGACTGGGCAAGGCTGCAATGCTTTGGCACTTTTCTCAGAAATGCAAAATT CAGGTATAAGTCCAGATCATATCGCCTTTGTCGCAATTCTCTCAGCTTGTAGCCATTCAGGATTATTGGAAGAAGGGAAA GTTTACTTTAAGCAGATGACTGATGATTACAGAATAACACCAAGAATTGAACACTTTGCGTGCTTGGTAGATCTTTTAGG ACGTGCTGGGCGAGTAGATGAGGCCTATGATGTCATCAAACAGATGCCATTAGAACCTAATGAAAGAGTTTGGGGGACAC TACTTAGTTCTTGCAGGGTGTACTCCAACATGGATATTGGCCTCTTAGCAGCTGACAACCTACTTCAGTTGTCTCCTGAG CAATCAGGTTATTATGTGTTGTTATCTAATATTTACGCAAAGGCCGGTAGATGGAAAGAAGTAACAGAAGTTAGATCATT AATGAAGAGAAGAAGAATTCGGAAAACGCCCGGCATCAGCAATGTTGAGCTGAACAGTCAGGTTCACACATTTCTCGCCG GTGACACGTCGCATCCGCAGTCAAAGGAGATCTATGAAGAGCTATATGTGCTGGTGGGAAAGATGAAGGAGTTGGGTTAT GTTCCTGAAACTGATTCTGCACTTCATGATGTGGAGGAGGAGGATAAGGAAGGCCATCTAGCTGTTCACAGTGAAAAGCT AGCTATTGTGTTTGCTCTTTTGAATACCCATGAGTCTCCGATCAGAATTACCAAAAACCTTCGTGTTTGTGGAGATTGCC ATATTGCTGCTAAGCTTATCTCCAAGATAGTTGGACGTGAAATTGTTATTAGGGACACCAATCGATTCCACCATTTTAAG GATGGCTTATGCTCATGTGGTGATTATTGGTGA
Protein sequence (LotjaGi2g1v0137300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRAYAACGEPGTARKVFDEIPERNVVFYNVMIRSYVNNRWYNDALLVFREMLHGAMLKVRLDWNLFVGNGLISMYGKCGC LLEARYVLDEMPRRDVVSWNSMVAGYAQNMRFDDALEVCREMDDLGQKPDAGTMASLMPAVTNTSSDNVLYVKDIFINLE KKSLVSWNVMITVYMKNSMPGNAIDLYLQMEKSEVEPDAITCASVLPACGDLSALLLGRRIHEYVERKKLRPNLLLENSL IDMYARCGCLEDAQKVFDKMKFRDVASWTSLISAYGMTGQGCNALALFSEMQNSGISPDHIAFVAILSACSHSGLLEEGK VYFKQMTDDYRITPRIEHFACLVDLLGRAGRVDEAYDVIKQMPLEPNERVWGTLLSSCRVYSNMDIGLLAADNLLQLSPE QSGYYVLLSNIYAKAGRWKEVTEVRSLMKRRRIRKTPGISNVELNSQVHTFLAGDTSHPQSKEIYEELYVLVGKMKELGY VPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTHESPIRITKNLRVCGDCHIAAKLISKIVGREIVIRDTNRFHHFK DGLCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 23 | 23 | 6.369 | ||
| Pfam | 1 | 25 | 25 | 1.1 | ||
| Gene3D | 1 | 58 | 58 | 5.5E-10 | ||
| ProSiteProfiles | 24 | 58 | 35 | 9.197 | ||
| Pfam | 26 | 52 | 27 | 5.6E-5 | ||
| TIGRFAM | 27 | 52 | 26 | 1.3E-5 | ||
| Gene3D | 59 | 149 | 91 | 3.4E-20 | ||
| PANTHER | 63 | 143 | 81 | 1.5E-102 | – | |
| ProSiteProfiles | 64 | 94 | 31 | 7.673 | ||
| TIGRFAM | 69 | 97 | 29 | 3.5E-4 | ||
| ProSiteProfiles | 95 | 129 | 35 | 12.266 | ||
| Pfam | 95 | 138 | 44 | 3.0E-7 | ||
| TIGRFAM | 97 | 131 | 35 | 2.2E-7 | ||
| Gene3D | 151 | 214 | 64 | 2.1E-8 | ||
| PANTHER | 154 | 210 | 57 | 1.5E-102 | – | |
| ProSiteProfiles | 163 | 197 | 35 | 10.337 | ||
| Pfam | 163 | 209 | 47 | 2.4E-9 | ||
| TIGRFAM | 165 | 199 | 35 | 3.3E-6 | ||
| ProSiteProfiles | 198 | 232 | 35 | 6.61 | ||
| PANTHER | 204 | 437 | 234 | 1.5E-102 | – | |
| Gene3D | 215 | 329 | 115 | 3.4E-29 | ||
| ProSiteProfiles | 233 | 263 | 31 | 8.824 | ||
| TIGRFAM | 238 | 265 | 28 | 8.9E-4 | ||
| Pfam | 238 | 263 | 26 | 7.5E-6 | ||
| ProSiteProfiles | 264 | 298 | 35 | 11.389 | ||
| Pfam | 264 | 311 | 48 | 3.8E-8 | ||
| TIGRFAM | 267 | 299 | 33 | 4.0E-5 | ||
| ProSiteProfiles | 299 | 329 | 31 | 7.443 | ||
| Gene3D | 330 | 513 | 184 | 3.8E-12 | ||
| ProSiteProfiles | 335 | 365 | 31 | 7.388 | ||
| TIGRFAM | 339 | 362 | 24 | 0.0013 | ||
| Pfam | 341 | 362 | 22 | 0.036 | ||
| ProSiteProfiles | 401 | 435 | 35 | 7.465 | ||
| Pfam | 407 | 433 | 27 | 0.15 | ||
| Pfam | 437 | 560 | 124 | 3.8E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0137300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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