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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0137400 |
| Transcript ID | LotjaGi2g1v0137400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P29024|CHIA_PHAAN Acidic endochitinase; TrEMBL-Plants: tr|A0A151S757|A0A151S757_CAJCA Acidic endochitinase; Found in the gene: LotjaGi2g1v0137400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:50232107..50233514) extracted from Lotus japonicus Gifu genome v1.2.
GGAACAAATGGCAAGCCAAGTCCCCTAGCTAGCTTGGTATAGCACCACTATAAATTGGTTCATCACCTCCGGCATAATTA ACCAACCATGGCTACCGCAAAACAACTATCAAATCTCTTCCTCTTGTTGGCCCTTGTAACCCTCTCTTCCATAACCTACC CCTCCATTGCTGCTGATGATGGTGGCGGAGGCCTTGTTTCAGTGTACTGGGGTCAAGCATCCAACGAAGAGGGCACCTTG CTTGAAGCATGTGAGACCGGAAACTATGGTATCGTGATCATTGAAGGCCTCATTGTCTACAACAGTGGTAACACCCCAAC ACTAAACTTGAGAAACCATTGTGGCTCCGATCAGCAGCACCTTTGCTCCGCACTACAGAAAGACATTGAATACTGCCAAC AAAAAAACGTCAAAGTCATCCTTTCCATTTTGGCGGACGATTCAGTTACCCCAGCGCCGCCACCACCACCACCGCCACTA TCACCACCATCACCGACACCGTCACCATCACCGTCACCATCACCATCATCCTCTTCCACGTTAAAGGATGATGTTAATGT TGAAAAAGAACTTGCAGACTATCTCTTGAACCACTTCTTCAGTGGCAAGCCTGGGCCACTAGGAAATGTGTCCTTGGATG GCATTGATATCATGGACGTCCCAGATAGTTCAAACCTGAAATGGGATACGCTTGTTCATGCCATTAAAGCATCCACAACA GAGAGAAACATTTACATATCTGTTTCACCACAGTGTGTGTACCCAGATTACTTCCTTGATTCTGTAATCCAAACCGGCCT TGTAGATTACATCTGGGTTGAGTTCTTCTACGGGAACCCTTGCATCTACTCCAATGGAGATGCCACCAATCTTTTGAAGG CGTGGGAAGAATGGACATCAAATGTTCCCAACAGCTTAATATTCCTTGGTCTTCCGGCTTCTGAGAAAGCAGTATCAGCT GGTTACATACCACCTGAAGATCTCATATCTAAAGTTTTACCGGCCGCCAAGGAAGCTTCCAACTATGGTGGAGTCATGAT TTGGGACAGGTATTATGATAAAATTTCTGGCTACTCTGCAGAGATAAAAGACAGCGTCCCAAAGGTATCAACTAGTTTGT ACGGTCTGCCTCTGCATCAAGGGTTTCTGCAGACTACATGAAGATTCACATGTTTGACTTAATTAGTGCCATATAAGCAC ACAGTTTGACTTGCATTTCATTAGGCAATCTATATATGTATTGAAATAAGTGTGCGGCGTACGTCCGTTTGTTTGATTAC AAGCATGCATGTATGTATGCAAGTGATTTCCCTTCAAATAAAAGTTATATATGTTTGCATATGTGGGTGGAATGGACTTT TATTGTTACTAATTTGCCATGAAGAAATCAACCCTAATAATAATTGAG
CDS sequence (LotjaGi2g1v0137400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCGCAAAACAACTATCAAATCTCTTCCTCTTGTTGGCCCTTGTAACCCTCTCTTCCATAACCTACCCCTCCAT TGCTGCTGATGATGGTGGCGGAGGCCTTGTTTCAGTGTACTGGGGTCAAGCATCCAACGAAGAGGGCACCTTGCTTGAAG CATGTGAGACCGGAAACTATGGTATCGTGATCATTGAAGGCCTCATTGTCTACAACAGTGGTAACACCCCAACACTAAAC TTGAGAAACCATTGTGGCTCCGATCAGCAGCACCTTTGCTCCGCACTACAGAAAGACATTGAATACTGCCAACAAAAAAA CGTCAAAGTCATCCTTTCCATTTTGGCGGACGATTCAGTTACCCCAGCGCCGCCACCACCACCACCGCCACTATCACCAC CATCACCGACACCGTCACCATCACCGTCACCATCACCATCATCCTCTTCCACGTTAAAGGATGATGTTAATGTTGAAAAA GAACTTGCAGACTATCTCTTGAACCACTTCTTCAGTGGCAAGCCTGGGCCACTAGGAAATGTGTCCTTGGATGGCATTGA TATCATGGACGTCCCAGATAGTTCAAACCTGAAATGGGATACGCTTGTTCATGCCATTAAAGCATCCACAACAGAGAGAA ACATTTACATATCTGTTTCACCACAGTGTGTGTACCCAGATTACTTCCTTGATTCTGTAATCCAAACCGGCCTTGTAGAT TACATCTGGGTTGAGTTCTTCTACGGGAACCCTTGCATCTACTCCAATGGAGATGCCACCAATCTTTTGAAGGCGTGGGA AGAATGGACATCAAATGTTCCCAACAGCTTAATATTCCTTGGTCTTCCGGCTTCTGAGAAAGCAGTATCAGCTGGTTACA TACCACCTGAAGATCTCATATCTAAAGTTTTACCGGCCGCCAAGGAAGCTTCCAACTATGGTGGAGTCATGATTTGGGAC AGGTATTATGATAAAATTTCTGGCTACTCTGCAGAGATAAAAGACAGCGTCCCAAAGGTATCAACTAGTTTGTACGGTCT GCCTCTGCATCAAGGGTTTCTGCAGACTACATGA
Protein sequence (LotjaGi2g1v0137400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAKQLSNLFLLLALVTLSSITYPSIAADDGGGGLVSVYWGQASNEEGTLLEACETGNYGIVIIEGLIVYNSGNTPTLN LRNHCGSDQQHLCSALQKDIEYCQQKNVKVILSILADDSVTPAPPPPPPPLSPPSPTPSPSPSPSPSSSSTLKDDVNVEK ELADYLLNHFFSGKPGPLGNVSLDGIDIMDVPDSSNLKWDTLVHAIKASTTERNIYISVSPQCVYPDYFLDSVIQTGLVD YIWVEFFYGNPCIYSNGDATNLLKAWEEWTSNVPNSLIFLGLPASEKAVSAGYIPPEDLISKVLPAAKEASNYGGVMIWD RYYDKISGYSAEIKDSVPKVSTSLYGLPLHQGFLQTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| PANTHER | 26 | 114 | 89 | 7.4E-83 | – | |
| PANTHER | 26 | 114 | 89 | 7.4E-83 | – | |
| Phobius | 29 | 357 | 329 | - | – | |
| SUPERFAMILY | 33 | 334 | 302 | 1.76E-56 | ||
| Gene3D | 36 | 121 | 86 | 5.1E-18 | – | |
| Pfam | 39 | 324 | 286 | 2.7E-10 | ||
| MobiDBLite | 119 | 153 | 35 | - | – | |
| MobiDBLite | 120 | 145 | 26 | - | – | |
| Gene3D | 145 | 335 | 191 | 1.9E-49 | – | |
| PANTHER | 159 | 337 | 179 | 7.4E-83 | – | |
| PANTHER | 159 | 337 | 179 | 7.4E-83 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0137400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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