Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0140400 |
| Transcript ID | LotjaGi2g1v0140400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prolyl 4-hydroxylase alpha subunit, putative; TAIR: AT4G25600.1 Oxoglutarate/iron-dependent oxygenase; Swiss-Prot: sp|Q8GXT7|P4H12_ARATH Probable prolyl 4-hydroxylase 12; TrEMBL-Plants: tr|K7LDR1|K7LDR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0140400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:51194246..51197924) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATTTCCCAAAATGACAAAATGTTAAACTCTCATCACTGACACCTAACATTAATAGAAGAATGATGTGAGTTTAAC GTGGCTGGTAGACAATAACAGAAAGCCGATGCAACCAAGCCAGCAGCAAAGAGAAGAGAAGCAAGCACGATTCGCATCAC AATGAATTGCAAATTTCAGATCACATTCACTGAGTAACCATTGAATAACATACACATAATTACAAACACTTTTTCACCAC CACTCCTTCTTTAAGAACCAATGCCCTCCCTTTCCCTTTTCCTCACCCTTCTCCTCCTCCTCTCCACTGCCTCCTTCTCC CAAAGGTAAATTTGCCGACCCATTTCTCTCTTTTCACCAATTTCGCTCCCCACAATTTACATATATAAAAAAATGCATTG CTTTTCATGGTTTAACCTATTTCTGTTACTAATTAAAATACTTACACTGTTTTTGGCATTGTTAATTTTGCATTAGCAGC AGGAAGAAATTAAGGAACAAACATCATGAATCTGAGTTGCGGTTTTCAGGTCACTCTGTTTATTATTCCAACAGAGTTGA TCCCTCACGTGTTGTCCAAATCTCTTGGCAACCAAGGTCAGGTACTTTCTAGAACTTCCCCTCATCATGTTATTATTAAG TTATATAATGCAGATCTTATATTTTTTCACTTTTGATTTGTTTGTTTATACTAGCAATTTTTTTTTTTTACTCACATTGC TTTTAAATTTTCAATATTTGATGTTGTTTTGTCCTTGTTGCTGTAGGGTCTTTCTCTACAAAGGTTTTTTGTCAGACAAG GAGTGTGACTACCTTATTTCTTTGGTATGCTACTGCTTATTGATTTTGGGAATACATTGTCAGCTTTTATTTTCACTAAT GGTTATAAAATTATCACATTTTTGTAACTCGCTCCACCTATACTTTTGCATGAGCATTGCTAAATGGCTCGAAATTGTTT TTAAATGAATCAGACTAAGCAGTATAATTTTTATTTAATGATACATGAGATTTCCACCAGTGTCATAATTACGAAGCAAT CAACCAATAAGAACAAGGGAAAGCATAGAAACGAATTTCGTTTCGTTCCTTAGAGCATTTTCCCTTTTGCATAGCTGGTC CTAAGCCCGGACAAAAGAGGAAATTGTGTTAGGTTTTGAGCAGTCAATGTAAAACTCGCCGATATCTTTAATAAGGATTT GTGATATAGCCCACCTCACCTAGTGGGATAAGGCTTTGGTTACAGTGTACTTGTTTTCATCACTCTATAACTTGTTTTGA AAAGATTTGTACAATGTTTGCTCCATTTTTACAGAAATATTTCAGAAAAAGGTAAAAATAAGGTGATGTTTCTGTAGTTA TTTGTGAAAACAGAATTTTTTTCTCAATTAGAAAAGGTTCTTATTGGTTTTCACTTTTCATGTTGGGTAGTACTTGGGCT ACTAGTCTTTGAATTTAACTCTCTCTCTTGTTCTTTATCTTGGCTAAGGCATATGCTGTGAAAGAAAAGTCCTCGGGGAA TAATGGCCACTCAGAGGATGAAACTTCATTGGATATGGAAGTAAGTCTTAACTGAAATTTTTCCACATCTACTTGGATGA ACTAATCACTAGAAAAATTAGGTTCTGTTTGAAGTTGATGGGTATAGTTTGGATTGTGCTTTCAAAGATGTTTTTCAGCA TATAAAGGATTTGTGAACGGTTGATTTTCATGGTCATTATTTTTACTGATTGTGAAATGTTGTGCGTGGGTGAGTTCTTC TGGACTTGTTTGATGGGAAAATCTTGTCTGCTGGTTTATTTTTCCTGTAGACCGCTTTAGGAATAATTTAGTCCAGGCCA ATGTAAAGGGTTTTTGGACGATTAATGATTTTCTTCTTACTTTGTTAGAGATCTAATAAACTATTCTTAGGTTTTGGCCT AAGATCGTTAGATTGTTCTTTATTTGTTTTTTTGAAATAAGATTGTTCTTTATTAGTTAGTACTATATTACTGAGCTTAG GCTGTTTTCGTTGTTAATTGAATACAGAAGTCTTTTTGACCATGTGGTCTATAATTCTTGTCAGTGATATTCATCATGTT ACTTGATCTTGTCTTGTTCTACATTTTAATGCTGAATCAAGCATAACCTGTAGCATTTTCATATGATGGTTTTGCAAAAT GAATGTCCATTTAACTTTTATCACCGATTTAATATAGGTTTAATTCTGGTAATAGATTGTCTGGCTTGAGCATGAGGTTT GGGCGAAATTACTGTAACTATTTATGCAGGGGAGTTCGCTCCAGATCAGGAAAAGTAAAACATGTCTTACAGAGTGCATC TATTATTGGTTCTAATTCTAAGTGCTTGCAGTTTGTTGGTTGTCACTATAAGTTCAAGTGTATAAAAAATTAAAAATATT CATATGTATAGAAAGAAACGTGATCCTTGACATCAATGTTTCTATTTTGCTGAAATTGAAGGCTTGAAGTTATTTTTAAA ATCCTTTTATCGCTATGATGAGATTGGTACAGCTAATAAACTTTGCAATTGCTGCTTGTTTTCAGCTTGCTGCTTGACCT TCAACAGTTTATTTATATTATAGCAATGGTGTTGTGGACATTAATGATGATGATGTTCTGCATTGTTATGTTCTAGGATG ATATTGTTGCAAGGATTGAAGAAAGAATTTCAGTTTGGACTTTTCTTCCTAAAGGTATGTGTTTGACTGTTTGGCAAGTC GAAGCCAGTATTTGTGTGTCTGTGCTCTGTGATAAATAATGATACATTCATACACATTCTAATATGTGATCGATCATCTT GTTTTCGGCAAACCATTTCTACTAGAGAATAGCAAACCTTTGCAGGTCATGCATTATGAACCTGAACAGGAAGGGAATAA CTTAGATTATTTTGCAAACAAAACCAAAGTGGAATTAAGTGGACCTTTACTGGCAACAGTTGTTTTATATCTCTCAAATG CTTCTCAAGGGGGTCAAATTCTCTTTCCAGAATCAGTGGTAAAGCCATTCAGTTTTTTCTTCCTTGTTCTATTTATTATC TACCTAGTTCTGGACCTGTTTTTACTGTTTAATCATTAATTGCGTGTGATATTTTCCAGCCCAATAGTATTAGCTGGTCA AATTGTAGAAGCAGTAGTAAGATTCTCCAACCAGCAAAAGGGAATGCACTTCTGTTTTTCTCTCTTCATCCAAGTGCATC TCCGGACAAGAGTAGCTACCATGCTAGGTGCCCTGTCCTTAAGGGTGATATGTGGTCTGCAATTAAGTTCTTCTATGCAA GATCAATTAGTGGAGGGAAACTCTCAACCATATCAGATGGTGGTGAATGTACTGATGAGGATGACAGCTGTCCTGCTTGG GCAGCCATGGGAGAATGTCAGAGAAATCCTGTGTACATGATTGGGTCTCCTGATTATTATGGTACATGTAGGAAAAGCTG TAATGCATGCTGATCAGAAGTTCTGCATGTTTGGTTTTGCTTCTAGCAAGCCAGAATTTATTCTATTGTGTGAGAAGCTA CAAGGAGTTGCTTCTCAAAATTAGAATCCATTATGTGCTATTGTGTGAGAAGATTGATTCTTCAAAAATGCTAGTTGACT ATCCACATAAATTATTTAGGTAGTTGTTATTAACACGCCCTCCTCGTCATCTAATATAACAACTGCCAATTATTTAATA
CDS sequence (LotjaGi2g1v0140400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCTCCCTTTCCCTTTTCCTCACCCTTCTCCTCCTCCTCTCCACTGCCTCCTTCTCCCAAAGCAGGAAGAAATTAAG GAACAAACATCATGAATCTGAGTTGCGGTTTTCAGGTCACTCTGTTTATTATTCCAACAGAGTTGATCCCTCACGTGTTG TCCAAATCTCTTGGCAACCAAGGGTCTTTCTCTACAAAGGTTTTTTGTCAGACAAGGAGTGTGACTACCTTATTTCTTTG GCATATGCTGTGAAAGAAAAGTCCTCGGGGAATAATGGCCACTCAGAGGATGAAACTTCATTGGATATGGAAGATGATAT TGTTGCAAGGATTGAAGAAAGAATTTCAGTTTGGACTTTTCTTCCTAAAGAGAATAGCAAACCTTTGCAGGTCATGCATT ATGAACCTGAACAGGAAGGGAATAACTTAGATTATTTTGCAAACAAAACCAAAGTGGAATTAAGTGGACCTTTACTGGCA ACAGTTGTTTTATATCTCTCAAATGCTTCTCAAGGGGGTCAAATTCTCTTTCCAGAATCAGTGCCCAATAGTATTAGCTG GTCAAATTGTAGAAGCAGTAGTAAGATTCTCCAACCAGCAAAAGGGAATGCACTTCTGTTTTTCTCTCTTCATCCAAGTG CATCTCCGGACAAGAGTAGCTACCATGCTAGGTGCCCTGTCCTTAAGGGTGATATGTGGTCTGCAATTAAGTTCTTCTAT GCAAGATCAATTAGTGGAGGGAAACTCTCAACCATATCAGATGGTGGTGAATGTACTGATGAGGATGACAGCTGTCCTGC TTGGGCAGCCATGGGAGAATGTCAGAGAAATCCTGTGTACATGATTGGGTCTCCTGATTATTATGGTACATGTAGGAAAA GCTGTAATGCATGCTGA
Protein sequence (LotjaGi2g1v0140400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSLSLFLTLLLLLSTASFSQSRKKLRNKHHESELRFSGHSVYYSNRVDPSRVVQISWQPRVFLYKGFLSDKECDYLISL AYAVKEKSSGNNGHSEDETSLDMEDDIVARIEERISVWTFLPKENSKPLQVMHYEPEQEGNNLDYFANKTKVELSGPLLA TVVLYLSNASQGGQILFPESVPNSISWSNCRSSSKILQPAKGNALLFFSLHPSASPDKSSYHARCPVLKGDMWSAIKFFY ARSISGGKLSTISDGGECTDEDDSCPAWAAMGECQRNPVYMIGSPDYYGTCRKSCNAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 5 | 295 | 291 | 4.4E-126 | – | |
| PANTHER | 5 | 295 | 291 | 4.4E-126 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 298 | 278 | - | – | |
| Gene3D | 52 | 240 | 189 | 5.7E-41 | – | |
| SMART | 60 | 240 | 181 | 1.2E-16 | ||
| Pfam | 130 | 240 | 111 | 3.3E-7 | ||
| SMART | 257 | 298 | 42 | 1.2E-4 | ||
| ProSiteProfiles | 258 | 298 | 41 | 9.711 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. | ||
| Molecular function | L-ascorbic acid binding | Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0140400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…