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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0140500 |
| Transcript ID | LotjaGi2g1v0140500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G62930.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic; TrEMBL-Plants: tr|A0A0R0IGR1|A0A0R0IGR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0140500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:51198573..51203478) extracted from Lotus japonicus Gifu genome v1.2.
CATTGACAAACCGCACTACCATCCATTTGTGCGCAATGTCAGTTTCAAGCTTGAGGAGGTGTCTTCCAAATCCAACTTTT CTTCTTTCCTTTTCATCCTTTCACTCTCATACTTCTTTGCCCCCTTCTACTCACAATGTTGATGATTCTGTGTCTTTGTT CCACCGCTTGCTCCAAATGCGTCATACTCCATCAATCATCGAATTTGGTAAGGTTCTAACATCCCTCATGAAGGCGAAGC ATTACTCCACCGCCATATCCCTTTCTCACCAAATGGAATTTAGGGGAATCATGCCTGACATCTTTACTCTCAACATCTTA ATCAACTGTTACTGCCACCTAGGTCAAATCTCTTTTGCCTTTTCTGTTTTGGCCAAGATTCTCAAGAGGGGTTATAAGCC AAATACAATCACCTTCAATACCCTCATTAAAGGTCTCTGTCTTAATGGCCAGGTTAAGAGAGCACTGCAATTTCATGACA AACTACTAGCACAAGGAATTCAATTGAACCAAGTCAGTTATGGGACCTTGATCAATGGGTTGTGTAAAATGGGTGAAACA AGAGCTGCCTTGCGGTTGCTGAGACAGATTGAAGGGAAATTAGTTCAGCCTAATGTGGTCATGTACAACACCATCATTGA TAGCCTCTGTAAAGATAAACTTGTAAGTGAAGCTTGCGATTTATATTCGGAAATGGTACTCAAGAGAATTTCTCCTGATG CTGTCACTTACAATGCTCTAATTTATGGCTTTTGCATTGTGGGTCAATTGAAAGAAGCAGTTGGTTTGCTAAATGAAATG GTGTTGAAAAACATCAACCCAAATGTTTATACCTTTAATATACTAGTTGATGGGTTATGTAAGGAAGGAAAGGTGAAAGA GGCTAAAAATATGTTAGCTGTGATGATGAAAGAAGGTGTAAAGCCTGGTATTTTCACTTACAATTCTATCATGGATGGGT ATTGCCTAGTTAAAAAAGTGAACAAGGCTAAAGATGAATTCAACTCTATGAGCCAAAGGGGAGTCGCTCCTGATATTTGG AGCTACAGTATCATGATTAATGGATGCTGTAAGAGTAGTATGGTGCATGAAGCTCTGGATCTCTTTGAGGAAATGCATTC CAAAAATCTGATTCCTGATACAGTAACTTACAGCTGCCTTATTGATGGTCTGTGCAAAGTAGGGAGAATATCTTGTGCTT GGGAGCTTGTTGGTAAAATGCACGACAGAGATCAACAGGCTGATATAATCACTTACAATTCTTTATTAGATGCTCTATGC AAGAATCATCATGTTGACAAGGCAATTACATTACTTGAGAGAGTTAAAGACAAGGGCGTTCAACCAGATATGTACACATA CAATATAATTATTGATGGACTATGCAAAAGTGGAAGACTAAAGGATGCACAAGAGGTTTTTCAGGAGCTTTTGATTAAAG GCTATCAGCTAAATGTTGTGACATATAATATAATGATCAATGGGCTTTGTATAGAGAGTTTGTCCGATGAAGCACTGGCC TTGCAATCAAAAATGGAAGACAATGGCTGTGTTTCTGATGCTGTAACTTATGAAACAATTATTCGGGTTCTCTTTAGAAA AAATGAGAATGATAAAGCACAGAAACTTCTTCATGAGATGATTGCTAGAGGTCTGCTTAAGATTGAAGTCAAGTGAGGTG CTTTCCAGTTAGACTTTGTTATTTTGAATTTTCATGATGAACATCTAGTTTTTTTCAATTATATTTTAAATTTGAATCTT ATTTTTTACAAATTGTTAGATGTATGATTAGTTGATTAGTTGTTGCAGTTGTTTCTGTTTAGTCTTCAGTTATACTTACT GTTATGATTGTTATGATGAGTTGGCATATGCTGCTAAGGTAGTATGCTTTTAGCTTTCTGCTATAATGAGCTAGCATATG TTATTTAGTTGTGTTGAGCTCAATAGGTAGTTATTCTAGTAGCTTTCAGCTGAAGCTAATCAATCTATAAATGTATCCCT TCTTTGTATTTTCCATTCAAGAAATGAATGATACATTTCAGTTGTTTTCCCTAGTTTTCTATCTACATTACTTTTCTAAC ATGGCATCAAGAGCTTCTTGACCCATATCCATGGCTTCCAATCCAACACAATCAGTGCCTTCTCAGGTGACTTTTCCGCC ACTGTTCGGAAGACAATGGCTGTGTTCCTGATGAAGCACTAGCCTTGTAATCCAAAAATGGAAGACAATGGCTGTGTTGC TGATGCTATAACTTATGAAACAATTATCCGTGCTCTCTTTGGAAAAAACGAGAATGATAAGGCACAAAATCTTCTTCGTG AAATGATTGCTAGAGGTTTGTTGTAAGATTAAAACCAAGTGAGATGCTTTTTAGTTACACGTTATTTGAAATTTCATGAT GAATATCCAGTCGTTTTCAATTATATTTTGAATTTGATTTGTATTTTTTATAAATTATGTATTAGAGTACATCACATACC GTGTAGTAGAAGCTACTATTAAGTAGCTGCTGACTGTGTATACAGTCAGCTTTAGAGTTAGTTATGCTAGCTGTCAAATT TAGTTTTGCATAGCTGTCATGCTGAGTTGTTATAACTGAATTTGTTAAGTTTGTTAAGATTGGTTAGCTTGATTGACAAG CTAGTTCACTATATAAACTGTATTCACTCTTGTATTCAGTAACTTCTCAAATCAATGAGAATGAGATTCATAGAATAGAG TTTTCAACATTATGTAAGTCGCATTTAAGAGATATGACTTACCTAATCTTTAATTTGTTTAGAAAAATATGAAAAGTGGC TATGCACATGAGTTGAGATTTATATCACTGGAATCTAAGACAACATACATCAAAAGAAGCTTATCTTATTTATGTGTGGG CTAATGAAATATATGTTAAAGGTATAATATGCGCTAGAGTATTTTTCATTTTCTTAAAATTTTTATTTGGCTGGTATACC TTCCCGCAAGCAATTGTTGGTGCTCTTATTTTACTTTCATGTATGACTTAATTTTCTTCGTGGTGTTGGTACATATTTTA CTATGACTTAAATAATTTGAGTATTCCTTTGGTGCATATTGGCTGAGATTGTTAGTTCACTTGCAAGCTTCTCTGTTCCA AGGAAGGTGAGATATAAATGTTCGAATGTTGATATACACCGTAATTTCATCGCAGGATGTTGTACTTCCATTGTTTACAG CTGCAATGGCACTTCCCCAATCTATTCGAGGATATTTGGGTGTTCTTTACACTGCTGCAGCTAGATATGCCCCCTTTTCT TTTTAAGTCCTTTCTTCAAATGGGGCATCAAGGTTCTCTTAAGGCCACATAACTTCTTAGACCTTTCTTGGAAATACTTG ATGGTTTGGAACTGAAAGACCCTTTCCTAAGGAATTGCATTGACTGACCTGCGGCCATTCTTGCTCTCCGGGGTGTAAAA TAACGGTATACTTACTCCCCGCGCAGATGATAAATGCATCGTTAATGAAACAGTGCTGGTTGAAGTATTAGTATACAAAT TCAGTGTTACTTTATAGTGTATTCTATTTGTGTCTAAACAATTTTTTCCTCCAACTCTTCAGCTTTACATGTTTGCAGAA TGGTACAAACTTGGATCCTGTCTTGAGTACTAGCTTTCTGGAACTGCAGCTATTGTTGATGCTCTTGTAGGAGGAGAGAA GTTGCGCGGACAGATTTCTCTTCATAGTCATGTCGAGAAGATCGTTATCATAGATAATGACTTTACCTTGAAGATATGAT GGTATTCATGAAAGTTGCTTTGCCTAAATGGTATCTCTTTAAGTATAAAACCTTCATTTTTTTAATGATGAGCAGATAAT TGATCAAATAATCACATTCTTATACTCATGTTATGAAACTGTATCAACTACTGTAATGATGGCTGTCAAGTATCTCCATG ATAATTATGGACTTCTTGAAGAAGTCAGGGTGACTCAATGTTTAACTAATATCAAATATGTTTACTTCTTCTAGCAAGTT GAAGGAAATTAAAGGTGCAAGATGCCAACTTTAATTTCGAAGAAACTTGTGCATGCAGGTTTCAAGTTTAATTACAGTCT TTAGGGAATGTTCTAAGATGCAATTCAATGTTGCAAGGAAAGGGGATATCTTTAACCTCTCATGTCTTGCAGCATTGTCA CTTAAGCAAGTCACAAAAGCAGAAGAAGGGGTTGTGGTTTATCTAGATGGCTGTGATTTGGTCAATCTGGACCCTGAGAA ATCATGTAATATTTAGAGGCTCTGGTTGTGATATAGAAGGGATAAATGAAACGGTAAAAGTGAAATCTTGGAAATGGTTA TCGGCTAAAAGTCAGAATTTTGGGAGCTCTATCTATGAATGGTTCTGTAACCCATTTATTTGCATTGAAGCACTGTAATA AAGTTCTGTACGCTCCTTGCAATGCTATTAGTCTAACTAGCATATAGAATAGTGGCTATTTTTGTCTGAGAAGGTCAAAC TCGAAGGGCTTGGGAGTGCAGAATGTCTCCCTAAGCTGCATCTGATCTGATCTTATTTGAATTAGTGCCTGTGTGTATTG CTTCTGCTTGAGATGTTTGACTCGTCCCTGCCATGATTTGGGAAATTAAGAAGCCTCGTGGATAGCTTAATAAGGAGACA AGGAACCTTTAATTTACTGTGGCTAGAAGTTTGGATGGGGAGTGTTGTGCTTGGCTTCAACTTGCTGTGTCATCTAAAAT GGCTTTTGCTGGTAGTAGTGACCAGTTCCTATGGCTATACATTTGGGTCTGTTGGGTAGATTTAGTCTTCATTAAGTCAT TAACTATGTAACTCTTAATTTATTCTCTGCAAATTTGGTTCACTTTGTTTGTATTGCATTGAAGTACTACGTCCATTCAA TAAATTTTGGCTTTATAGAAAAAAAG
CDS sequence (LotjaGi2g1v0140500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTTTCAAGCTTGAGGAGGTGTCTTCCAAATCCAACTTTTCTTCTTTCCTTTTCATCCTTTCACTCTCATACTTC TTTGCCCCCTTCTACTCACAATGTTGATGATTCTGTGTCTTTGTTCCACCGCTTGCTCCAAATGCGTCATACTCCATCAA TCATCGAATTTGGTAAGGTTCTAACATCCCTCATGAAGGCGAAGCATTACTCCACCGCCATATCCCTTTCTCACCAAATG GAATTTAGGGGAATCATGCCTGACATCTTTACTCTCAACATCTTAATCAACTGTTACTGCCACCTAGGTCAAATCTCTTT TGCCTTTTCTGTTTTGGCCAAGATTCTCAAGAGGGGTTATAAGCCAAATACAATCACCTTCAATACCCTCATTAAAGGTC TCTGTCTTAATGGCCAGGTTAAGAGAGCACTGCAATTTCATGACAAACTACTAGCACAAGGAATTCAATTGAACCAAGTC AGTTATGGGACCTTGATCAATGGGTTGTGTAAAATGGGTGAAACAAGAGCTGCCTTGCGGTTGCTGAGACAGATTGAAGG GAAATTAGTTCAGCCTAATGTGGTCATGTACAACACCATCATTGATAGCCTCTGTAAAGATAAACTTGTAAGTGAAGCTT GCGATTTATATTCGGAAATGGTACTCAAGAGAATTTCTCCTGATGCTGTCACTTACAATGCTCTAATTTATGGCTTTTGC ATTGTGGGTCAATTGAAAGAAGCAGTTGGTTTGCTAAATGAAATGGTGTTGAAAAACATCAACCCAAATGTTTATACCTT TAATATACTAGTTGATGGGTTATGTAAGGAAGGAAAGGTGAAAGAGGCTAAAAATATGTTAGCTGTGATGATGAAAGAAG GTGTAAAGCCTGGTATTTTCACTTACAATTCTATCATGGATGGGTATTGCCTAGTTAAAAAAGTGAACAAGGCTAAAGAT GAATTCAACTCTATGAGCCAAAGGGGAGTCGCTCCTGATATTTGGAGCTACAGTATCATGATTAATGGATGCTGTAAGAG TAGTATGGTGCATGAAGCTCTGGATCTCTTTGAGGAAATGCATTCCAAAAATCTGATTCCTGATACAGTAACTTACAGCT GCCTTATTGATGGTCTGTGCAAAGTAGGGAGAATATCTTGTGCTTGGGAGCTTGTTGGTAAAATGCACGACAGAGATCAA CAGGCTGATATAATCACTTACAATTCTTTATTAGATGCTCTATGCAAGAATCATCATGTTGACAAGGCAATTACATTACT TGAGAGAGTTAAAGACAAGGGCGTTCAACCAGATATGTACACATACAATATAATTATTGATGGACTATGCAAAAGTGGAA GACTAAAGGATGCACAAGAGGTTTTTCAGGAGCTTTTGATTAAAGGCTATCAGCTAAATGTTGTGACATATAATATAATG ATCAATGGGCTTTGTATAGAGAGTTTGTCCGATGAAGCACTGGCCTTGCAATCAAAAATGGAAGACAATGGCTGTGTTTC TGATGCTGTAACTTATGAAACAATTATTCGGGTTCTCTTTAGAAAAAATGAGAATGATAAAGCACAGAAACTTCTTCATG AGATGATTGCTAGAGGTCTGCTTAAGATTGAAGTCAAGTGA
Protein sequence (LotjaGi2g1v0140500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSSLRRCLPNPTFLLSFSSFHSHTSLPPSTHNVDDSVSLFHRLLQMRHTPSIIEFGKVLTSLMKAKHYSTAISLSHQM EFRGIMPDIFTLNILINCYCHLGQISFAFSVLAKILKRGYKPNTITFNTLIKGLCLNGQVKRALQFHDKLLAQGIQLNQV SYGTLINGLCKMGETRAALRLLRQIEGKLVQPNVVMYNTIIDSLCKDKLVSEACDLYSEMVLKRISPDAVTYNALIYGFC IVGQLKEAVGLLNEMVLKNINPNVYTFNILVDGLCKEGKVKEAKNMLAVMMKEGVKPGIFTYNSIMDGYCLVKKVNKAKD EFNSMSQRGVAPDIWSYSIMINGCCKSSMVHEALDLFEEMHSKNLIPDTVTYSCLIDGLCKVGRISCAWELVGKMHDRDQ QADIITYNSLLDALCKNHHVDKAITLLERVKDKGVQPDMYTYNIIIDGLCKSGRLKDAQEVFQELLIKGYQLNVVTYNIM INGLCIESLSDEALALQSKMEDNGCVSDAVTYETIIRVLFRKNENDKAQKLLHEMIARGLLKIEVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Gene3D | 30 | 171 | 142 | 5.6E-31 | ||
| PANTHER | 34 | 192 | 159 | 1.9E-165 | – | |
| PANTHER | 34 | 192 | 159 | 1.9E-165 | – | |
| ProSiteProfiles | 53 | 87 | 35 | 7.465 | ||
| Pfam | 87 | 135 | 49 | 8.6E-14 | ||
| ProSiteProfiles | 88 | 122 | 35 | 11.444 | ||
| TIGRFAM | 90 | 124 | 35 | 5.3E-7 | ||
| ProSiteProfiles | 123 | 157 | 35 | 11.301 | ||
| TIGRFAM | 125 | 158 | 34 | 1.5E-6 | ||
| PANTHER | 134 | 325 | 192 | 1.9E-165 | – | |
| PANTHER | 134 | 325 | 192 | 1.9E-165 | – | |
| Pfam | 154 | 185 | 32 | 1.3E-8 | ||
| ProSiteProfiles | 158 | 192 | 35 | 10.665 | ||
| TIGRFAM | 160 | 186 | 27 | 2.9E-5 | ||
| Gene3D | 172 | 285 | 114 | 1.2E-37 | ||
| Pfam | 190 | 221 | 32 | 1.9E-10 | ||
| ProSiteProfiles | 193 | 227 | 35 | 11.619 | ||
| TIGRFAM | 195 | 229 | 35 | 2.5E-9 | ||
| SUPERFAMILY | 226 | 480 | 255 | 1.62E-5 | – | |
| Pfam | 227 | 276 | 50 | 1.3E-18 | ||
| ProSiteProfiles | 228 | 262 | 35 | 12.167 | ||
| TIGRFAM | 230 | 264 | 35 | 7.0E-8 | ||
| PANTHER | 246 | 416 | 171 | 1.9E-165 | – | |
| PANTHER | 246 | 416 | 171 | 1.9E-165 | – | |
| ProSiteProfiles | 263 | 297 | 35 | 13.285 | ||
| TIGRFAM | 265 | 298 | 34 | 1.1E-8 | ||
| Pfam | 297 | 346 | 50 | 1.2E-16 | ||
| ProSiteProfiles | 298 | 332 | 35 | 11.126 | ||
| TIGRFAM | 300 | 334 | 35 | 3.4E-7 | ||
| Gene3D | 316 | 398 | 83 | 1.6E-25 | ||
| ProSiteProfiles | 333 | 367 | 35 | 13.099 | ||
| TIGRFAM | 336 | 369 | 34 | 4.3E-11 | ||
| Pfam | 364 | 395 | 32 | 3.2E-11 | ||
| ProSiteProfiles | 368 | 402 | 35 | 10.731 | ||
| TIGRFAM | 370 | 399 | 30 | 2.2E-7 | ||
| PANTHER | 385 | 540 | 156 | 1.9E-165 | – | |
| PANTHER | 385 | 540 | 156 | 1.9E-165 | – | |
| Gene3D | 399 | 467 | 69 | 7.7E-24 | ||
| ProSiteProfiles | 403 | 437 | 35 | 13.066 | ||
| Pfam | 403 | 451 | 49 | 1.4E-17 | ||
| TIGRFAM | 405 | 438 | 34 | 1.9E-8 | ||
| ProSiteProfiles | 438 | 472 | 35 | 12.803 | ||
| TIGRFAM | 440 | 473 | 34 | 3.4E-7 | ||
| Gene3D | 468 | 544 | 77 | 9.7E-18 | ||
| ProSiteProfiles | 473 | 507 | 35 | 11.06 | ||
| Pfam | 473 | 518 | 46 | 5.6E-12 | ||
| TIGRFAM | 475 | 508 | 34 | 3.2E-7 | ||
| ProSiteProfiles | 508 | 542 | 35 | 10.019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0140500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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