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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0140800 |
| Transcript ID | LotjaGi2g1v0140800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G38150.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SZL5|PP356_ARATH Pentatricopeptide repeat-containing protein At4g38150; TrEMBL-Plants: tr|I3S7X9|I3S7X9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0140800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:51219481..51221529) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAATCAACCCTATAGCGGCAATCTCCTTCATACTGCTCGCTCTGTTTGCAGCATCTTCCAATTCGTTCGTTCTTGTT TTCCGATTACCGTGTAAGTCATGTGTTTCATTTATCATTTTCTTTTTGCATAACATATTTCTTATGTAGCTTTTGCTGAA TTTTGTATTGCATTTTTCTTCCTTCCGAAAACCGTGTGCTTCTAGAATGAGTTATAAACCTTTTCTATCTTGTACTAGTA GTTTTTTATTTTCTCTTTGTGATTTAGTCAATAATATTATTAATTGAGCATCTTTTGTACTGATCATCATGTACTAAGAT AGTGACTGTCCCTGAAATGGTAAGAGCCAGGGGCATAAGGTTTGGGAGGGTGAAGGGTTCGAACTCTGATGAGTACTAAT TTACTAACATTACTACCAACTAACATTTGCCTGGAAAAAAACCTAAGATAGTGACTGTATTTTAATGTCAAATACAATCT ATTATATGCACTTATTCTGAGTAGTTAAGTTATGCTTTAATGTCAAATACTACCCATTATGTGCTATTTGCCCCCAATCC TGCCAAATGATGTAAAACTTAGACTATTGAGCAGCTGTACGGTTTTATCATGATTTAAGTAAAACTGTTTTATATTCAAT TAGGGTGGATTACAGGTTTTGAAAGTGGCTTTGAGTTAATCCTAGCATCAATTGCAAATAGTTGAGTAGTAGTGAATTTC AAGAAAATGGTAAATTGCCAGCACTTTGTGTTGATTATTTTTTTTTTTTATCTGGGATGGGTTTTTTACTTTATGGTTGG TGCAAATTATGAACAGGTCTTCATGCCAGCATTGCTAGGACGGGTTCATAAGCCTGTATCCTCCTCTCAGATTGATAGGC TTGTTTCCTTTTTAAATTCCAAACGACCATGGACTGTACGCCATTTTAGCAAACAACTTGTCGGAGAATCAGATGACGTT TCTATTCAGAACTCAGACCCAAATTTTAGTGACAGAAGAAGCCGCGAAGGATCAGAACCAATTCCAAGTACAAAGCCAGT TAATCAGCGTACCCGAGAATATAATAGAGGTTCTCGTTCAAGATTCGATGGCAACCGTGATGAAGTGGAAAAGACAACAA TGAAATCTGATCTTGGATTTCAGGGCCGAAATAGGCCGGACGTTGCCAATCAATTAGGAGACAGTTTCCTTGATAAGTTC AAGCTTGGTTTTGATAATAAAGCAGGGAATTCCTCAGAAACCAACCAATCTGAAGAGGCGACAAAGAGTTCAAATTCCAA TCAACCAGCTATGCCTGAGGACGCTGATGAAATCTTCAAGAAGATGAAGGAAACTGGTCTTATCCCCAATGCGGTGGCTA TGCTTGATGGTCTATGTAAAGATGGTCTTGTTCAAGAAGCATTGAAACTTTTTGGTTTGATGAGAGAAAAGGGAACCATT CCAGAGATTGTCATTTACACCGCTGTGGTTGAGGGCTACACAAAGGCCCACAAGGCTGATGATGCCAAAAGGATTTTCAG GAAAATGCAGAGCAATGGAATTTCACCCAATGCTTTCAGTTACACCGTCCTTGTACGAGGACTCTGCAAATGTAGCAGAT TACAGGATGCTTTTGAATTTTGTGTAGAGATGTTAGAAGCTGGTCATTCTCCAAATGTCACAACTTTCGTTGACCTTGTA GAAGGTTTCTGCAAGGAACAAGGGATTGAAGAAGCAAAGGGTGCTATCAAAACATTAATAGAAAAGGGTTTTGCTGTGAA TGAGAAAGCTGTTAAGGACTTTTTGAACAAGAAAAAACCATTTTCACCCTCCGTCTGGGAGGCTATCTTTGGGAAGAAAG CCCCACAGATGCCATTTTAAATATCTTTGTAGACTATGTAAGCTTTTATCTTAATTCTTCTACTGTTATGCCGGACTCGT TTTGCCCTTTATGTAATTTCATGGTTACTTCGGTTGCACTCATTAAAATTTGCTAAAAAAGATTGACTAGTTAGTATTTC TTGATAGTAAGCACTGTTTTCATTTTTAAATGTACCAGTAGTTCCAAAT
CDS sequence (LotjaGi2g1v0140800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTTCATGCCAGCATTGCTAGGACGGGTTCATAAGCCTGTATCCTCCTCTCAGATTGATAGGCTTGTTTCCTTTTT AAATTCCAAACGACCATGGACTGTACGCCATTTTAGCAAACAACTTGTCGGAGAATCAGATGACGTTTCTATTCAGAACT CAGACCCAAATTTTAGTGACAGAAGAAGCCGCGAAGGATCAGAACCAATTCCAAGTACAAAGCCAGTTAATCAGCGTACC CGAGAATATAATAGAGGTTCTCGTTCAAGATTCGATGGCAACCGTGATGAAGTGGAAAAGACAACAATGAAATCTGATCT TGGATTTCAGGGCCGAAATAGGCCGGACGTTGCCAATCAATTAGGAGACAGTTTCCTTGATAAGTTCAAGCTTGGTTTTG ATAATAAAGCAGGGAATTCCTCAGAAACCAACCAATCTGAAGAGGCGACAAAGAGTTCAAATTCCAATCAACCAGCTATG CCTGAGGACGCTGATGAAATCTTCAAGAAGATGAAGGAAACTGGTCTTATCCCCAATGCGGTGGCTATGCTTGATGGTCT ATGTAAAGATGGTCTTGTTCAAGAAGCATTGAAACTTTTTGGTTTGATGAGAGAAAAGGGAACCATTCCAGAGATTGTCA TTTACACCGCTGTGGTTGAGGGCTACACAAAGGCCCACAAGGCTGATGATGCCAAAAGGATTTTCAGGAAAATGCAGAGC AATGGAATTTCACCCAATGCTTTCAGTTACACCGTCCTTGTACGAGGACTCTGCAAATGTAGCAGATTACAGGATGCTTT TGAATTTTGTGTAGAGATGTTAGAAGCTGGTCATTCTCCAAATGTCACAACTTTCGTTGACCTTGTAGAAGGTTTCTGCA AGGAACAAGGGATTGAAGAAGCAAAGGGTGCTATCAAAACATTAATAGAAAAGGGTTTTGCTGTGAATGAGAAAGCTGTT AAGGACTTTTTGAACAAGAAAAAACCATTTTCACCCTCCGTCTGGGAGGCTATCTTTGGGAAGAAAGCCCCACAGATGCC ATTTTAA
Protein sequence (LotjaGi2g1v0140800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFMPALLGRVHKPVSSSQIDRLVSFLNSKRPWTVRHFSKQLVGESDDVSIQNSDPNFSDRRSREGSEPIPSTKPVNQRT REYNRGSRSRFDGNRDEVEKTTMKSDLGFQGRNRPDVANQLGDSFLDKFKLGFDNKAGNSSETNQSEEATKSSNSNQPAM PEDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKAHKADDAKRIFRKMQS NGISPNAFSYTVLVRGLCKCSRLQDAFEFCVEMLEAGHSPNVTTFVDLVEGFCKEQGIEEAKGAIKTLIEKGFAVNEKAV KDFLNKKKPFSPSVWEAIFGKKAPQMPF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 46 | 116 | 71 | - | – | |
| MobiDBLite | 81 | 103 | 23 | - | – | |
| MobiDBLite | 136 | 160 | 25 | - | – | |
| MobiDBLite | 136 | 161 | 26 | - | – | |
| Gene3D | 153 | 225 | 73 | 3.0E-14 | ||
| PANTHER | 162 | 318 | 157 | 2.1E-37 | – | |
| ProSiteProfiles | 176 | 210 | 35 | 9.438 | ||
| TIGRFAM | 182 | 210 | 29 | 1.3E-6 | ||
| Pfam | 182 | 207 | 26 | 1.2E-6 | ||
| Pfam | 210 | 259 | 50 | 3.4E-14 | ||
| ProSiteProfiles | 211 | 245 | 35 | 11.718 | ||
| TIGRFAM | 213 | 247 | 35 | 2.2E-8 | ||
| Gene3D | 226 | 328 | 103 | 2.6E-22 | ||
| ProSiteProfiles | 246 | 280 | 35 | 11.74 | ||
| TIGRFAM | 248 | 282 | 35 | 7.3E-8 | ||
| ProSiteProfiles | 281 | 315 | 35 | 8.232 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0140800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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