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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0143800 |
| Transcript ID | LotjaGi2g1v0143800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G55630.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g55630; TrEMBL-Plants: tr|A0A072UJW5|A0A072UJW5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi2g1v0143800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52173659..52177266) extracted from Lotus japonicus Gifu genome v1.2.
GAGGGACCAAAAGCATTTGTAGATGAAACGCTGCGTTAAGGATCTTGTTCCTCCCTCGTGTTAGGGTTTTTCAGATTTCC ATTTTACCTCCATCTTCTCCCCAACCACAGTTCACAGTAGCAGCCATGGATTCCACCTCGCAATGACGCGATTTCTCGAT GCGAGCCTCAATTTCTCAACCCGCGCTTCAAATCGTCGTGCGATACGGTACGGTTTTCTCTCCCCTGATTTTCTCATCCA CCATCTACCCGCAATCGGCGATTCGTTTCTAGCTCAATGTGCTTCTTGAAGCTTCTACCTCCAACGAAACAACTGATTCT GTTATCGGGAAATTCGTTTTTGCTCAGGGGTTCGTCGTTTCAGAGACGATGATGGGTTCGAACCATGAACTCAATAACCA TTTTGGGTCATAGGATGGTTCAGATAATTTCCCATTGTTTAAACATTTCCCGGAGATTTTGTGATCAACCCTTTCATGTT GATGATGGGGTTGTTAGCAGAGAGTTTGATTTGGTTGAGGAGCCTTTGAAGAAAATGTATGTAGCTTCGTGTGAGAGCGT GGATTTGAGCTACAAGAAGAATGATAGCTTTAGATACGGCGAACAGCGGTTTTCAGATTTGGGGATTGATGTTGAGAGGG TTCTTGAGGTTCTGCGGCGAGATTGCCTTGATTTTGATTTTAGGGCGGCCTTAGATGGGTTGCGTGTGAGGCCATCGTGG CTTCTTGTTAGAGAAGTCCTGTATGGGGTGTTGAGAGAAGTGAACGGTGAAAACAAGACCACAATCGCGAAAGTGGCATA TAAGTTCTTTTTGTGGTGTGATCAGCAGGAGGGGTATGGGCACACTCCTAACACTTATCACTTGCTCATGCAGATATTCG CGGAGTGCGATGAGTTTAAGGCAATGTGGAGGCTTGTCGATGAGATGATTAAGAAAGGTTTTCCTGCCACTGCCCGCACT TTCAACATTTTGATATGTAATTGTTGCGAGGCAGGTTTCGCTAGGAAGGTGGTGGTAAAGTTCATAAAGTCAAAGTCGTT TAACTACCGGCCATTTAAGCACTCCTATAATGCAATTCTCCATTCTCTTCTTGTTTTAAAGCAGTACAAATTGATTGAGT GGGTTTATAGACAGATGTTGCTCGAGGGTCTATCTTCGGATGTTTTAACTTATAATATTGTCATGCTTGCCAAGTACAGA CTTGGGAAGTGGTACCAGCTCGAGAGGCTGCGCGATGAGATGTGGATAAATGGCCTTTATCCAGATTTTCATACTTATAA CATTTTTCTTCATGTTCTTGGTAAAGGAGACAAACCGTTTGCTGCTCATAAGCTTTTAGATGAAATGAGAGAAAGAGGTA TAGAGCCAACTGTTCTTCATTTCACCACGCTGATAGATGGACTGAGCAGAGCAGGAAATCTGGATGCTTGCAGATATTTT TTTGATGAAATGGTAAAGCATGGATGCGTGCCAGATGTCGTGGCTTACACTGTAATGATCACGGGGTATGTGGTGGCTGG TGAGCTTGAGAAAGCTCAGGAAATGTTTGATGAAATGATTTCTAGAGGACAAATTCCTAATGTGTTTACTTATAATTCCA TGATTCGTGGATTATGTTTGGCGGGAAAGTTTGATGAAGCATGCTTGATGCTCAAGGAAATGGAAACTAAAGGTTGTAGT CCAAACTTTGTTGTCTATAGTACATTAGTGAGTAATCTGCGGAATGCTGGAAAGCTTTCTCTAGCTCGTAAAGTGATAAA ACAGATGAAGCGGAAGGGGAAATGTGTTCACCATATTTCAAAGTTCAAAGGGAAAGGGTATAAGAGATAGTCTGGTTAGT GATGTTAACTCATGAGCCATCAACGTATTGATCTGGTTAACTGAGATCAATTACCTGCCAGTTGTTCAGCTGGTGTTGAA GCTGGAGAATGAAGTATGTAATTTCTCCCTTCTAATATGTATTTATTGCAATTCAATTCCTAGCAACTGACATGTGAACC TTTAAGCCCATATTTTTCGAAATATATTATCAATATTGTTTGTTGTGTAATTTTAACTGTTTATCATTCATAACATTCCT GTTTAGCAAGCTAACTGAGGTCTGATTACAAGTTGTCAAGATAATAGTCATTATACTGGTGCTCTGGAGGTGCTGATGAT TACATAGCATCATTTTATAAGAATAATATAAATTCAAGAAACATGTTGGATATACTCACTTACATTGTTTCTTGCAGATT TTGATGGTTGAACCTAAGATTGAAAGCAATGGGAGCGATCAGGTATTGGTCACTTGGTTTGTTGGTCAATATGGTCATAT CTGTAGCAAGGAACATCAGCATAAAGTTGCATTAAGCTATTGCCAAGAGCTAGATTCGCAGTATGTCATTTTGTTGCTTT CCACTTGCATGCTTAAATCGGTTGCTTGCATGTGGGCTTCAAAGACAGGTTTTAGTCTGCTGTCATGTTCCAGATGATTA TTGAGAAGAGTTCCCCTCACTCAGATTATTGTTTGGCTGGTTCTTAGTTGGCCAGATATCTTGTGCTGAGTTAACACATG ATAGACATAATCTCTCATCTTCCAGAGTGGGGCAAGTTGCATGTGCTGATTCTGAAGTCTATACAGCTTAATGCTATCCT AGACATGTTATGAACGCCATTGCTGTGTTGCCTATGCAATATGTATTATTCACCTTGCACTGCCTGTTCTTTGGATGCTA TTCCAGACATATGAATGCTATTGCCTGTGCAATCTGCAATATTCATGTTGCCCTACTTGATCTATTGCAGATGTCTACGA TGTTTGGCATATGGAGGTTTGTTGTAGATACCCCCCCCCCTGTTTTTTAGCCTTGAAAAGGTGTAAACACTACCTTCTGG TTAACTAATCGCGTCAGAGATACAGAAGGGAAAGCGACTTTCAAACTTGATAGCAATTCTTTTAATCTTTCTTGTGCATG CTTTTGACAACTTGCTAATGTTGTTTTTGTTGTATGCCTACTTCCATTAATAGTCTTTCACAATTTCATAGCTAGAAGCC ACAAATGACAGATTCCTGTATGCGCATCCTTCTGTTAATCTAATGATATTTGAAGCTGAGAAACAACTCAATGAACCCTC GAGATGACTTTTATATGTATTTGCATGGTTAGTAATATTTATTCAGCTATTTGCCTCAGGGGATGTTGGGTTACTGCTTT TACATCATAAATTTCATTTATATAGATGTCTTAGTTCTATCTGATTCTTTGCTCCCTGTTTTTTCTTGCTAGTGGCCATT TCAGGATCCCATGGAAGCCCAGAAAATGAGTTTTTTAGATTTTGGGTACATGACATAGAGCAGATTGGTGATTGTTTTAT TTAGCCTTTGGATGGCTTGGAATCACAAAATAGATTCTTAGTGTAGACAATGTATTTAGGTGGATTTCTGGCATTAACTC CAATTTCATGTGTATACTTGTCTTAATACTATCTTATTCTTTGCCTCTGATTTTTCTTGCTAGCGATCCTATAAGGGGGC TAAAATCCTCCGTTCCCATTCAGTGTTCCCTTTCCTATAAATACCAATCAAATTATGCCATGTCATTTAAAAACCACTAA TATAAGGG
CDS sequence (LotjaGi2g1v0143800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCAATAACCATTTTGGGTCATAGGATGGTTCAGATAATTTCCCATTGTTTAAACATTTCCCGGAGATTTTGTGA TCAACCCTTTCATGTTGATGATGGGGTTGTTAGCAGAGAGTTTGATTTGGTTGAGGAGCCTTTGAAGAAAATGTATGTAG CTTCGTGTGAGAGCGTGGATTTGAGCTACAAGAAGAATGATAGCTTTAGATACGGCGAACAGCGGTTTTCAGATTTGGGG ATTGATGTTGAGAGGGTTCTTGAGGTTCTGCGGCGAGATTGCCTTGATTTTGATTTTAGGGCGGCCTTAGATGGGTTGCG TGTGAGGCCATCGTGGCTTCTTGTTAGAGAAGTCCTGTATGGGGTGTTGAGAGAAGTGAACGGTGAAAACAAGACCACAA TCGCGAAAGTGGCATATAAGTTCTTTTTGTGGTGTGATCAGCAGGAGGGGTATGGGCACACTCCTAACACTTATCACTTG CTCATGCAGATATTCGCGGAGTGCGATGAGTTTAAGGCAATGTGGAGGCTTGTCGATGAGATGATTAAGAAAGGTTTTCC TGCCACTGCCCGCACTTTCAACATTTTGATATGTAATTGTTGCGAGGCAGGTTTCGCTAGGAAGGTGGTGGTAAAGTTCA TAAAGTCAAAGTCGTTTAACTACCGGCCATTTAAGCACTCCTATAATGCAATTCTCCATTCTCTTCTTGTTTTAAAGCAG TACAAATTGATTGAGTGGGTTTATAGACAGATGTTGCTCGAGGGTCTATCTTCGGATGTTTTAACTTATAATATTGTCAT GCTTGCCAAGTACAGACTTGGGAAGTGGTACCAGCTCGAGAGGCTGCGCGATGAGATGTGGATAAATGGCCTTTATCCAG ATTTTCATACTTATAACATTTTTCTTCATGTTCTTGGTAAAGGAGACAAACCGTTTGCTGCTCATAAGCTTTTAGATGAA ATGAGAGAAAGAGGTATAGAGCCAACTGTTCTTCATTTCACCACGCTGATAGATGGACTGAGCAGAGCAGGAAATCTGGA TGCTTGCAGATATTTTTTTGATGAAATGGTAAAGCATGGATGCGTGCCAGATGTCGTGGCTTACACTGTAATGATCACGG GGTATGTGGTGGCTGGTGAGCTTGAGAAAGCTCAGGAAATGTTTGATGAAATGATTTCTAGAGGACAAATTCCTAATGTG TTTACTTATAATTCCATGATTCGTGGATTATGTTTGGCGGGAAAGTTTGATGAAGCATGCTTGATGCTCAAGGAAATGGA AACTAAAGGTTGTAGTCCAAACTTTGTTGTCTATAGTACATTAGTGAGTAATCTGCGGAATGCTGGAAAGCTTTCTCTAG CTCGTAAAGTGATAAAACAGATGAAGCGGAAGGGGAAATGTGTTCACCATATTTCAAAGTTCAAAGGGAAAGGGTATAAG AGATAG
Protein sequence (LotjaGi2g1v0143800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSITILGHRMVQIISHCLNISRRFCDQPFHVDDGVVSREFDLVEEPLKKMYVASCESVDLSYKKNDSFRYGEQRFSDLG IDVERVLEVLRRDCLDFDFRAALDGLRVRPSWLLVREVLYGVLREVNGENKTTIAKVAYKFFLWCDQQEGYGHTPNTYHL LMQIFAECDEFKAMWRLVDEMIKKGFPATARTFNILICNCCEAGFARKVVVKFIKSKSFNYRPFKHSYNAILHSLLVLKQ YKLIEWVYRQMLLEGLSSDVLTYNIVMLAKYRLGKWYQLERLRDEMWINGLYPDFHTYNIFLHVLGKGDKPFAAHKLLDE MRERGIEPTVLHFTTLIDGLSRAGNLDACRYFFDEMVKHGCVPDVVAYTVMITGYVVAGELEKAQEMFDEMISRGQIPNV FTYNSMIRGLCLAGKFDEACLMLKEMETKGCSPNFVVYSTLVSNLRNAGKLSLARKVIKQMKRKGKCVHHISKFKGKGYK R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 117 | 210 | 94 | 5.9E-9 | ||
| ProSiteProfiles | 154 | 188 | 35 | 9.383 | ||
| Pfam | 157 | 201 | 45 | 7.6E-8 | ||
| TIGRFAM | 157 | 188 | 32 | 8.3E-4 | ||
| ProSiteProfiles | 189 | 223 | 35 | 7.399 | ||
| Gene3D | 211 | 310 | 100 | 4.3E-13 | ||
| ProSiteProfiles | 224 | 258 | 35 | 6.993 | ||
| ProSiteProfiles | 259 | 293 | 35 | 8.703 | ||
| PANTHER | 290 | 467 | 178 | 1.5E-64 | – | |
| Pfam | 293 | 341 | 49 | 1.8E-9 | ||
| ProSiteProfiles | 294 | 328 | 35 | 11.301 | ||
| TIGRFAM | 296 | 330 | 35 | 8.8E-8 | ||
| Gene3D | 313 | 478 | 166 | 1.5E-49 | ||
| ProSiteProfiles | 329 | 363 | 35 | 11.389 | ||
| TIGRFAM | 333 | 365 | 33 | 3.2E-10 | ||
| Pfam | 363 | 411 | 49 | 4.1E-17 | ||
| ProSiteProfiles | 364 | 398 | 35 | 12.562 | ||
| TIGRFAM | 366 | 400 | 35 | 2.4E-7 | ||
| ProSiteProfiles | 399 | 433 | 35 | 14.107 | ||
| TIGRFAM | 401 | 434 | 34 | 4.4E-12 | ||
| Pfam | 422 | 465 | 44 | 2.8E-5 | ||
| ProSiteProfiles | 434 | 468 | 35 | 9.175 | ||
| TIGRFAM | 436 | 465 | 30 | 4.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0143800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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