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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0144500 |
| Transcript ID | LotjaGi2g1v0144500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G25560.1 myb domain protein 18; Swiss-Prot: sp|Q9M0K4|LAF1_ARATH Transcription factor LAF1; TrEMBL-Plants: tr|A0A0L9VIR1|A0A0L9VIR1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52352789..52361545) extracted from Lotus japonicus Gifu genome v1.2.
AAATATATTCATGTACGATTTGGGATTATTTTGATAAATGATTGATGCAGAGAAACAAACAATGATTGGTACAAATTTAT TCTAACAGTTTCCTAGATGGTACCCTTCCAATAAGGAAAAGCATGGTTTCTACCAAGCAGGACATAATTTCTTTTTAACA TCATTTCAGAGAAGGTTTTACATGCTTGGTTAATATTTATTTTAATGATTTTTGTTTCAACTCTTTTCTGGTATAAATTA TGGGCATCCACTGCACCATAATCACAACTATTCGTTACATTATATATTAGTCTGAAATATTCTACCTCTATTTTCTTTGT GGACTACTTGGTCTCTCTGTAGTTCATATCAGCTTCAGGGAATCCAAGGTTGCCATCAAAGTGAAGTGGTGTTAGAAAAA AGCAGAATGGGGGTCCAGTTACAGGAAAAAACAAAGCCAAAATACAGAAAGGGTTTATGGTCACCTGAGGAAGATAATAA GCTCAGAAACTATATCCTTAACCATGGTCATGGCTGCTGGAGCTCTGTCCCCATTAAGGCAGGTAGGTTTCTTTCCAATT GGTGATCCTTTATCAGTAAGTAGCATAATCTTGGTCCATGTGCTGTCTTATATAATTCAATTGATTCTTCCTTGGTTTTG TTGAGGAGAAGTTTCTCTTCCTTTCATATGATAAAATGTGCATTCAACTTATTTATGTGTTTGGATTAGTGTGTAACATG AACGAATTCATAAAAAGAGTTATTATCACTTTTTATCTTGAACTCATGTTAACCTCAATTTACGTAGGGGTGAACAGTTA TACAAACATAACTCATACTTAAGTTATCAAACAGAAATGTAGGCATTCTTCACTGACTTTGGCACCAATAATTTTGAGAT ATCTAGTGAAATAAACTACTAACAATTAAGACATTCTTCTCATGAATCAGTTTTAAGAATTTTGTCCAATCCATTTAAAA TTAGAAAAGAAGAAATGTGGTTAAAAGTTCAAAATCTTCTTTGTAAAAGACAACCTAAGGATTATCCACAATTCTGATTT CCAAACTTTTATACCATATGGCTGACATGATAATCATTTTGTGTTAACTTCTGATTCTGCAGGTAAAAATATTCATGTTA AAGTTAGAGATGGGTTTTTATTGTGAATAACTTAAAGTTTAAATTATTTCTTATTTTGTTCTACATTCACTAGAGATATA TACTTTATAAAGAGTAGGATAATTCTAACCGCTGAACTAATTTTTGGAGCAGAGTAAAACTTAAATCAAATTTTAATATG GTGGTAGAGCCAATTTTAAATCCAAGGCCACCCCTAAAAAATTAAGATTAAAGAATCATGTTCTTTCATGTAAATATTTC ATGATAGGGATAAAGGTATTGACAAGACCTCTCATGTTCATATCCCGCACTTGAAGGCGAGTTCAAATCATTGATTTAAG ATGTGACTAATAAAATACATATAAAGGGTTGGACAATCTTACTCCTAAGCTAACTCTTGGCATGTGGTTAGGTTTATTCA GAATTCTAATAATGTAGCAGCAGGTGAATTTGTATTCATTTAATTATAGCTTATTTTGAATTGCTGACTAAGTGTGCTGA AATATCCAGGATTGCAAAGGAATGGAAAGAGCTGCAGACTAAGGTGGATCAATTACCTGAGGCCAGGACTAAAGAGAGGG GTATTCAGCAAACATGAGGAGGATACAATCATGACCCTTCACCACATGTTGGGTAACAAGTAAGCAAGAACACCTTCCCT TTCACCTTATTAATTTTTAATTATTTCAATTGCACCTAGAGGTCAAGAACTAAAAATTGGAACTTTTAGTGAAGATAATG ATATAGCCATAGTAGACTTTTGAGTCAAGGAGTTGTTAGTTACCAAATAATTAGGTAGTGCAAGTGCTGCAAGTAAAGGA AAATATTATTTTTTGCATTTATTTATATATTTATTTATGTTGAGGACTTACGCTATTGAATGTCATTGGATTTCCATGCC AGCTATCTCCTATTTAATGTTATTTAAATACTATTCGTACCAAAAACTAGTACGACAATGAAACCATGAACTGGCATTTG ATCGCATGCTCCTTTTTCAAATAGAGGGAGAGACGTGAATGTACATATAAAACATATCTGGTCTACTATTCCTTAACTTT TTTAAATGAACTTAAATTTAGCCCAGCATTAGCATTATTGAATAATTGTTAGACTTTTCCATCACAAGTATTTAACAATC AAAATATTAAAATATTTCTCTAAACATACTGTTATGCCATATGATGAAATGTTTCTTTAATTAAACTCCGTTGGAACTGA GCCTGCCCCCAACATGTGAAACTAAGGATGCAATTACTATGAGTTTAATTTAAAGTGCATCACAAACACATAAATTGAAC TCATTAGGTTTGGTGACATTTATGAAAAAATGATTTTTATAGGTAATATTGTGAAATTCAATCACAAAATTTCATAATTG ATCATGTTAAATGCATGCATAATTGATTATGTGTGAGATTAATTCCACAAATTGATTCTCAATTATCAATGTTTTCATCC ATAATTGATTTTACTCTACCGAAATTGATTTTGGAGTTTCCAAACAAGCTCTCAATCTCTCAAAGCGCGCGCTTGTTTAG ATATCAATTGAGTAATCAGAATAGTTGCTTTAACTTTTTATACACTAATGTGCCAACAGATATTTAAATGTATCATTACA ATTCAAGTGTGTTATTTTTGGGAAGACATTTTCATCAGCGTTATTTCTTTCAACTCATTAAAACAAAGCCTGATAGAATG AATAATCACACAATATCATTTTCTTTGTACCCATTTTGCAGTGTTCAATCTTTGATTTCCCTAAAACAATTCTTTTTTTT TAATGGAATCTGCTGAGAGAAACTTAATATATATTTTGATCAGGTGGTCTCAGATATCACAGCATTTGCCAGGAAGGACT GACAATGAGATAAAAAACTACTGGCATTCATATTTGAAAAAGAAAGTACTCAAACCTCATGAAATGGAACCTCATAGCCA AACTCAGCATGCTAGCTCAAGCTCAGACACAAAGGACTCATCACTCTCTACACAGAAACTCTCAATTCAGGATCCTAATT ATGGAATTTTAGAAAACATGGAAAAATCAACACCACAATATTCTGATCACCACCTCTCACAAAACTATAACTTGGCCAAG GATACTTCTCAAAGCTCCTTACCAAAACTGCTATTTGCTGAGTGGCTTTCAGTGGAGCATGTGAATGCTGGTGGAAGCTC TGTAAATTCTGAAGACTCTTTGGTCAATGGATTTGATCAAACTTCAACTTTCCAAGAACCTGTGATGAATATGTCAGGAG GACACTTCGGTGAAGAGTTTCATGATAGTCTAATTCACAACTCAGCTACTGCTATGTACAATTCACAGCTTAACTTACCA GGTCAAGGGGATGAAAATGACTATGTCCATTATATACAAGGAGGAGATTTATGTAGCAATTTCACCCTGAGCATTGATTC AATAATGTATGTATAAGGAAGAAGTGTACAAGACTTCTTAAAAAGGAAGAATAATTTGCCCAGCGTCTGTGTTGTTCCCG GAGATCTCTTCTCCTTGCAGGGGCGTTGAGTGGGCTGTTTCTGGTGGGATGAGGGCTCTTCCCAGGGAGGCTCTGTTCCC TGAATTGGGGGCGGGCCTCTCTGGTTCTGATGCAATTGCTTGCTTGGAGGCTCCTTCTTCCGTTCCGGTTTGCGACCCCC TCTCCCTTCTAGTGTTTTTCATACCATCACATCCCAAACACATTCTCTTATTTTAGTTTCTTAATACTATTTATCACCAT TTATGTGGGTTCATTGCCACAAAAGATTTAAGATCTCAAATGGAACAGAGCAAATTTTGCTTCAACTATGATTTTTTATT TTACTATTACTCGGGTCTCATCATAGCACAAATATTTATAATGCAAGTGAGAGAATTTAATAATACTCAATCTAACGAAC CATAAAGTAGAGTTTCTTAGTGTTTTAATTTTAAGGAACCAAGACTCCAAGATCACAAGTGTTTGTTTAAGGCTCACAAA AAACCGTGATTTTAGAGGGACCTAAGATATGATAAAAATTGATTTTTATATCACTCTAAAATTATGGTTCTTTGGTTTAG GTCCCACTAAAATCATGATTCCTTGGTTCTGACCTATACATATAACAACATTAATTAGTGGATAGTAGTCTTTTATATTT GGACCTAATTGTAATTTTTTTATTTCTCATTTTTTTTTTTGTTACAAGAGGAATTTCTCATATATTTGAATTAAGATTGA AGATTTCATATTTAAAAATAAAAGTTATCATTATTTAAATTTCAATTAGTAATCATGACTTGATAAAATTAATTAAAGAT AATAATGATAATAATAAGTTGATTGGTTATGACCCTTTTTGGTTTGTTCCTGGGTCGTGGGGCTTGGATTTTGCGCTTCT TATCTAGGTTTTTTTTTTGGGCTGTCTATATTGCTTGGTAGTTTCCTTTTTGTTGCGCAAATCTCCACTTTGCTCCTACT CTTGCTAGTTAAGCTTTGAAATGTATATATAATATTATCGTTTAGCTGTAAAAAAATAATAAGAAAAATTGAAATTGACT CACACTATATAAAAATATTAATCATTTATTATAACCTTTTATATTATTATTTATACTAATAACTAGTTGTAAAAGATTTC AATTACTCATAATTAAATTAAATATTAATATTGTTTAAATTTTAATTATTAATCAAAATTTTAATATTTTTTTATAATAA AACAATATTAATAAGAAGAAGTAAAATTGACTTGACTTGTACATTGATAACTACATTAATGAGTGGATAATAGTCTTTTA TATTTATAACTAAAAGATTCGAGAGCTCGAAGACAATCTAAAATCTATTATGGGAAGAATGGAAGTGGTGGGAGTGTCTG AGGAGCTTCGAAAAGACAGATTTCAAGTAATGGAGGTTCTGTGGAGGGAATATACAAACGAGGAAAGAAAATGGCGGGTG AAATCTCGGGTACAATGGTTGAAGGAAGGGGATCGCAACACAAGGAATTTTCATCGTGTTAGTAAAGCAAAATCAGTTAA GCGTAACATGGTTCACCTAAACTATGATGGGAGGAGCTTGGAAAATCCGAAGGAAATCAAGGAAGCGGTTCGTGATCATT TTGTTCAGTTTTTTGCTTCGGACAACAGGGATAGGCCAACGCTGAGGAATTTGGGAATGAAAACAATGAGTATGGCAATG AATATGTTGCTAGAAGAAGAGTTCAGTGAGGATGAAATCAAGGATGCTATTTGGGGTTGTGATGGTAACAAAGCACCGGG TCCGGATGGGTTTACAATGGCATATTTTACAGAGTTTTGGGATGTAATCAAGGCTGATCTGTTTAATTTTTTTCCAGGAA TTTTACCGGTTAGGGAAGTTTGTGAGAGGTTTGAATACAACGTTTGTTTCTTTGATTCCCAAAGGAGATCGGCAAGATTC TATTGCAGATTGTCGCCCTATTAGCCTTATAGGAAGCACTTACAAGATAGTCTCTAAGGTATTGGCCAATAGACTAAGCC TGGTGCTTCCGGGGCTGCTGTCAGAGAATCAATTTGCATTTACCAAAGGTCGACAGATTGTTGATTGCTGTTTTATTGCA AATGAGGTGGTTGATGTGCTGAAACGGAAACCGGGTGGCAAAATTTTGCTTAAGTTAGACTTGGCAAAAGCTTATGATAA GGTTGATTGGAATTACCTGTTTGATATTATGCAAAATATGGGTTTTGGAGATAAGTGGTTGGAGTGGATTCGATGTTGTG TGACTACGTCGTCTCTTGCGGTGTTAGTGAACGGTTCACCAACGAAATCTTTTTCTTTTCACAGAGGTTTAAGGCAAGGG GATCCTCTGTCCCCTTTGCTCTTTAATTTGTGTGTTAATGGCTTGTCTGTGATGCTTAATCAGCTATTGCAAGAAAATAG TCCGTGTGGTGTTAATGTGGGGCATGATCTTTTCCTAAACCATTTGCTATTTGCAGATGATATTCTTCTGTTTTGTGAAA ATCATTTTTGGCAGATTGAGATGTTGGCAGACACAGTGGAGGCTTTCCTATATGTTTCTGGGTTACAGCTTAATTTCCAA AAATCGAATGTCATTGGGGTTAATGTTAATGATGAGCTGGTACAAAGAGCAGCGGTATATTTGTCTTTCTCAAGTTGTCA TTTGCCTGTAATGCATTTGGGTTGTTCGCATGGGGGTAATCCACGAAGAAAGATTTTTTGGGAGCCCGTTTTACAGAAGC TTAAGCGTAAGTTGGGGTCAATGACTTCACGGTTTTTATCATTAAGCGGGAGGTTAGTGCTCTTGAAGGCAACTCTAAAT TCTATACCGCTGTATTTTATGGCAATATACAGGGCACCGGTAGGGGTGGTTAAGGAGATGGAGAAAATAATGCAGAGGTT TGTGTGGGGCTTTAATGATGGGGGGAGAAATATTGTGTGGGTTGCTTGGGGAGACATTTGTAAGGGAAGGAGGCTTGGGG GCTTAGGAGTGGGATATCTCGAGTGGCGAAACTGAGCTTTGTTGCTGAAGTGGGTGTGGAGGTTTGGGAGGGAGAAGGGA GCTCTTTGGAGAAGGGTGGCTTGTGCAAAATATGATATCCCAGAAGAGTTCATTTGCTTGGATTTGATCAGGTTACAGCG TCAGAAAGCTTCTTTGGTTGTGGCAGATATTTACAAAACCTATACAGAGGCGTCTCTGGTGGCTGCTGAATTTAAAAGAG GATTAGCATGTCAGGTAGGTGATGGTGTTAGTGTTCGGTTTTGGTCAGATATTTGGTTCGGGGATGCACCGCTGCAGGTG AGGTTTCCTAGAGTGTTTGCTCTTGCTCGTGATAAAAATGTATCGGTGGCCCAAGTGCGTATCTCCAATGAAGAGGGGAT GGGGTGGTCCTTTGATTTTCGAAGGGCGTTCTTTGATTGGGAGTTGGGGCAATATGATGATTTTATGCAACTCATCAGTT CGCATGTGCCGGCAATGGATAAGGACGATAAATTGATTTGGAGAGGGGATCAGTCAGGGTTCTTCTCAGTCAAAGCAGTG TGTGATGCAGCGGAAGCATTGTGGATTGCGAGCGAATCCTAGATGGTACCCGTGCGTATTTCATGGGTGATCCCAGCCAA GGTTTCCTAATTCGTCTGGCAGCTGCAGGCCAATAAGGTGGCTACTAAAGATAATCTGATTGCTCGTGGTGTGCCAGATA TTGGGGAGGGACTCTGTGATTTTTGTAGGCGGGTACCAGAAACAACGGGTCATTTATTTATTCATTGCCCGGTTGTTTGG GAGCTATGGTGTAAGGTCTTGAGTAGGGAAGACATGGTGTGGGTGTGTCCGAGGATTGTTGAAGCTTTACTGTTAGCATG GGAGGGCTATCGAAGAAGGGTTGATAAGTTTGTTTGGGAATTGTTCCCTTATGTCGTGTTTTGGACAGTTTGGCTTCACC GGAATGATTGTGGGTTTAATCAAGGAACTGTTTCTTCAGTTCATTTATGGGACCTGAGTTTGGTTCATGTGTTCTGGTGG ATTAAGGGCGCGTGGGAGGAGTGTCCTTATGATTTGCAGCAGTTTGTGGCGGGTTTTGAGCATGTTCGATGGCCACAAAA ACAGAAGGTACAACGTGTTGTTTGTTGGACTCCACCGCAAGCTCCTTTGTTGAAATTTAATGTTGATGGAGCGTCAAAAG GAAACCCGGGTCAGAGTGGGATTGGTGGAGTGCTTAGAGACCATGACGGGGAACCTTTGGGTTTTTTTGCAAAAGGAATG GGTATCTTGTGGGCCTTTGAGGCAGAAGTCCAGGCTGTGTTACATGCCTTGCGGTTTTGCTCTCAATTTAGTTTTAAGGA TGTTGTGATTGAAACTGATTCTACTCTAGTGGTGGGATGGATATCTAGTGGAGATAGGAGGCCATGGAAGCTAGAACATG TTTTTAATCGTATTGACCAGCTAATGGCTGAGGTGAGGTGTGTAGGGGTGGTGCATGTACTACGTGAAGGGAATACGGTT GCAGATTTTTTGGCAAATCAAGGATGTGGTAGGGAGAATCAAATATGGGTCTGCAGTGGTATTACTGAATGATAAGGGTA ATCATAGTACTGGTATATTTACCATATATCTGCATATTTCTGTCTGCTGCAATTGTATGTGAAGTTGTTCATTTGCTGCA AGTGATTTGGTGGGTTCAAGGGGTTTCAAAGGTTTTTTTAATGTATATGCCAACGGTGGGATTGTGATATTTTGATTGTG GGAGGTTTTTTGTTATGATCTTTGGCTCTTTGTGGTGACTTGGTAGCCAAAAGTTTTGGTTCCTTGGGTACTGTAGGTGT CTCACGGGGTGACTAAAAGGAGTTTGGTTGTGTCAAGATTTTTCAAGGCTTTATATGAGACTTATTTTTCCACAGGAGCT AAAATGTGTTGGTGATGGGTTGTGTTGGAAACTACTTTTTTGGCTGTGGTCACGGTGCATTTTTGGGGGGGTTATATGAT CTGTACGGTATATGGCATCTTTGAGACTTGAGTACTCTTTTTCCTTCCTTAGGTTTTTTCCCATTGGGTTTTTCCTAGGA AGGTTTTAATGAGGCTTAGTCTCAAGGTTTTCTTTGGCCATAGGGTGGGTTTTGTCTTCCCTTTCTGGATTATACTTGTA CTCTCTTTTTGTTGTGCTTTTGTAGCACTTTATTAAT
CDS sequence (LotjaGi2g1v0144500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGTCCAGTTACAGGAAAAAACAAAGCCAAAATACAGAAAGGGTTTATGGTCACCTGAGGAAGATAATAAGCTCAG AAACTATATCCTTAACCATGGTCATGGCTGCTGGAGCTCTGTCCCCATTAAGGCAGGATTGCAAAGGAATGGAAAGAGCT GCAGACTAAGGTGGATCAATTACCTGAGGCCAGGACTAAAGAGAGGGGTATTCAGCAAACATGAGGAGGATACAATCATG ACCCTTCACCACATGTTGGGTAACAAGTGGTCTCAGATATCACAGCATTTGCCAGGAAGGACTGACAATGAGATAAAAAA CTACTGGCATTCATATTTGAAAAAGAAAGTACTCAAACCTCATGAAATGGAACCTCATAGCCAAACTCAGCATGCTAGCT CAAGCTCAGACACAAAGGACTCATCACTCTCTACACAGAAACTCTCAATTCAGGATCCTAATTATGGAATTTTAGAAAAC ATGGAAAAATCAACACCACAATATTCTGATCACCACCTCTCACAAAACTATAACTTGGCCAAGGATACTTCTCAAAGCTC CTTACCAAAACTGCTATTTGCTGAGTGGCTTTCAGTGGAGCATGTGAATGCTGGTGGAAGCTCTGTAAATTCTGAAGACT CTTTGGTCAATGGATTTGATCAAACTTCAACTTTCCAAGAACCTGTGATGAATATGTCAGGAGGACACTTCGGTGAAGAG TTTCATGATAGTCTAATTCACAACTCAGCTACTGCTATGTACAATTCACAGCTTAACTTACCAGGTCAAGGGGATGAAAA TGACTATGTCCATTATATACAAGGAGGAGATTTATGTAGCAATTTCACCCTGAGCATTGATTCAATAATGTATGTATAA
Protein sequence (LotjaGi2g1v0144500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVQLQEKTKPKYRKGLWSPEEDNKLRNYILNHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGVFSKHEEDTIM TLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKVLKPHEMEPHSQTQHASSSSDTKDSSLSTQKLSIQDPNYGILEN MEKSTPQYSDHHLSQNYNLAKDTSQSSLPKLLFAEWLSVEHVNAGGSSVNSEDSLVNGFDQTSTFQEPVMNMSGGHFGEE FHDSLIHNSATAMYNSQLNLPGQGDENDYVHYIQGGDLCSNFTLSIDSIMYV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 264 | 260 | 1.5E-127 | – | |
| Gene3D | 5 | 67 | 63 | 6.6E-17 | – | |
| PANTHER | 5 | 264 | 260 | 1.5E-127 | ||
| ProSiteProfiles | 10 | 62 | 53 | 16.279 | ||
| SUPERFAMILY | 13 | 109 | 97 | 1.25E-27 | ||
| SMART | 14 | 64 | 51 | 3.4E-10 | ||
| Pfam | 15 | 62 | 48 | 3.9E-12 | ||
| CDD | 18 | 62 | 45 | 1.65651E-9 | ||
| ProSiteProfiles | 63 | 117 | 55 | 24.147 | ||
| SMART | 67 | 115 | 49 | 2.2E-14 | ||
| Pfam | 68 | 113 | 46 | 7.5E-14 | ||
| Gene3D | 70 | 144 | 75 | 2.1E-19 | – | |
| CDD | 71 | 113 | 43 | 4.08379E-10 | ||
| MobiDBLite | 121 | 145 | 25 | - | – | |
| MobiDBLite | 127 | 145 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0144500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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