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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0144700 |
| Transcript ID | LotjaGi2g1v0144700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Membrane steroid-binding protein; TAIR: AT5G52240.1 membrane steroid binding protein 1; Swiss-Prot: sp|Q9XFM6|MSBP1_ARATH Membrane steroid-binding protein 1; TrEMBL-Plants: tr|I3S3C3|I3S3C3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0144700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52412472..52416941) extracted from Lotus japonicus Gifu genome v1.2.
TCCGAAAAACAACCACCGTATTTCGCCCATAACTGAATGCCTCGTCAGTGGCTGGAGGGGGGAGCCTCAGAACTCGCTCA CGCGCGCGATGGTTCCACCAAGCTTCACCCAGATCTGAACAGCCATCTTGGTGACTGGAGGGGGAAACTGGCCAAGAGGA GGAGCGGTAAGACGTTAGCGTTGTCTCCGTCGTGTGGTGGTCGTTGGCTCGATTGCGGTGATGAAAGCGTTTTCGAGAAC CTTCTTCGTGCCTGGAACAATTTCGGTAGAGCATAGAGATTTGCCTGTACTTGCGTTGTACAGCGCCGTCGCAGGAAGGC CAAACCCCGTGCTCGCCGCTGCTCGTAGACTCGCCGGAACCAATGAGATCAGGTTCTTCCTCTGAAGCAAATATTCATCT TTCATGCGAATCTGTATCAAAGCCTCTCGCTTGTGCAGATCTGGGGAAAGCCACCACCACCAATACAAATAGGTATTTTT TTAATTGGTTTATTTTAGAGAGAAGGATGGTTTGGTTGTTCAATTAGATCAAGATAGGATTTTTAATTTTAATTTGTTTG TTCATTGTTTTTGCTCTTGAATCTTGATTATGATATTTGAACTCTAAAGATGCTTTTGGGATGTTGGGTAGTACCGGAAG TGGCAAGCCTTCTGGTATACGATGTGAGTTTTACTGGTGATGAGGTTGAATAAGGTTGAGACTTGAGGGAGAAAGGAGGA GACACACACTAAAAAAGCTTTATGGTAATGAACAAATTAAAATTGTTATAAATTATATAAAAGTAAAAGCAATGAAAATA TTTTCAAAGAAAAAAAATTCTCATCAAGTCTTCATTGAATTGTTGAATTTTTTTGTTGGCGTTAGACAACTTTGGTGACG AAACCAAACCGTGGTAAAAGTAGAAGCAAAAAGGGTGTTATAAAAATCTTCCCCTTTTCTCTCTTCTCTCTTTATCTGAC ACTCTCTCTCAAACACTTCCTCTATCACCAACCAATCCACAAAACATGGCTCTGGAACTGTGGTCAACACTGAAGGAAGC CATAGTTGCCTACACTGGCTTCTCCCCAACCACCTTCTTCACCCTCCTCGCTATCTTCTTCGCCTTATACTACGTCCTTT CAGGCCTCTTTGGCTCCTCCGACACCCACAACCGCCATGGAACCACCAGGGACTTCGAGCCGCAGATGGAGCCTCTTCGG CCGCCGGTTCAGATCGGGGAAGTCACCGAGGAAGAGCTTAAGAGCTACGATGGCTCTGATCCCGAGAAGCCCCTTCTCAT GGCGATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGTAAATAATCATAGCATAGTTGAAAAACTAAACTTTTGCTG ATTTTGGATTCTGGGTTTTCTTTTGTTTGGTCAACAGAGACTTTTTGGTATTTGGATTTTTTTTTTATACTGTCTAGTTT TCATCTCTGTTGTTAATTCGCCTTTTTAAATTTTGTGTTTGCTACCCTTCTTTTCGAATTGCATTTGATAAGTATAAATC TTAAGAATATATGATTTTGAACTTCTTTTTTATGTTTGAAGGTCTTGGTTTTGTTATTGTTTTCTGTGTATGAGTACTTG TAGTTCTTTGTTTGATTGTATGGTTGGAAGAGGGTGAGGACGTGCTCCTTCTCAAGTTTTTATTGGAATTACTATGTTAT CACTTATCAATTAGTGTTTGGTTTTGCTTGGTAGGGGGTGGGGGATGGGAAAGTGGGTATTGGAGAATTGGATGTTGGGT GTGTATAGAGTTATGTAACGTTTTATTCAATTGCGCTATCATTTTCTGACCTACCCTTAATTTCTGTTTGGTTGATTAGC TGGGAGGTGGTTGGTTGGGTGGAAAAAAGTGGTGATCAAACATGGTTATGGCTTATTAGAGTGAAAATGACTTAGTTTGT ACTTCAACCTTTTCTTAATTTTGTATTTCCACGCCAAGTTTTAAGTGAATTGACTTCAGATTTTCCGGCTTCCAACATTA TACTAGTCAACCAAGTAGGCTCTCAGTCAAGGCTGTTTTTGGACAATAGTGAATTATGTTCAACTGGGTAATGATTTTTA TATACCTCTTCTTGTCAATCTCTCTCTTCAAAGTGCATCACATGTTTCACTCCCCCCACCCCCTCTATCCCTCTCTTCCT CTCTTAAAGTATATAAATACATATATTTAAGTTATTCAAATATATGTCAAGCTATTTTGCCAAACTTTTTTAGGACAAAA CACAATGCACACTGAAGACTGGATGAGGCAAACTATAACCCATTGATGCACTTTTGCTTGGAGCTTCTATTTATAATTGT AGCTCCTAAAAAATGGGGGAGTGAATTTTGAGAGTGAATTATGTCATCACAACCATTGATTGAGAAAGTAAAGGTTGAGA TTTAAAGAACTTCACCCTAGTTTGTTATACATGTGAAAGTATGATCACACCAAATCAACAGTTGTAATTGCTTACTTTAC TCTCTAATGCGACTCTCTCACTTTAGAGGACCCAAATCCTCTATTATACCTTCCAATCCTATGTAAGTTTGCATTCAAAA AAAATTAAAACAAACTGAACATTTTAATTGAAAAGGGTGTCCCTCAATTAAAATAAAGTGAATTTTCACGCTTTACTCAA TTTAATTTTTTTCTTATGTTTGTGTATGATTCAATTGTTTTAACTACAGTTTTGATGCATCTCAAAAGAGAATGATTTGA GGAAATATAGTATTGATATGCCCCTTATTGGGACAATGGTTGATCTAGATGGTTGGTATGTCATGGGTATTAGTCATTTT TCTCTTTGCAACTTTAATTATTCATTCTATCTCTGAAAAGAATAAAATCTTGGTAGTTTCAAGTTTAAATTTTGTTTATA GGGTTGCTCAATTTAGAATTAGGGTAGTCATAAAATTATGAACTTTAAGTTCTCAAATAAGCTTGGGTTTCCAAACTGTT TTTATGTAGTATGAATCACGTAAGCCTCTTATTTAAGGCATAGGTTAGTTGAAAACAAGTACATCATATTTTTTTTAATC TATATTGGTAGGACCTAATGTGTAGGTGCGTTTTGGTTTTCAGTATAGCTTTTCATTTTATTCTGATTGCATAATTATCC CTAAAAAGCTCGAGTTATTTTTGCTTGATATATTTTTTGTATGAAAGTTGGGTAATATTAGGATGATCACTGTGTTCCCT TCACGCAACCTTTTCCAATACCTGCTAGCAAACATACTATATTATAGGTTGCTTTCAACCATTGTTGTCAGATTTTGAAT AAAATTGTGAATATCATGATAATTTGTCTGAATATGCATGAGTTATGAAACTCAAAGGTAAAAACAAAGTAAATTTAACT ATTTGGGAAACAATGACCTGAAAACTCACCTTGTGTCTGATAAATTTGCTAGTTGCAAAAATTAATGTGTTTAATTTTCT TTTCATTTCTACTTTAATTGCCACCAGGACATCACGTTTGGTAAAGGAAATTGATATATGTTTTCCATTTTTGTCTCTCA CTGTGTGTAATCTATCCTGCCAGGATGTTTTACGGACCCGGTGGACCTTATGCTCTATTTGCCGGCAAGGATGCTAGCCG AGCTTTAGCAAAGATGTCTTTTGAAGAGAAAGATCTAACTGGGGATATCTCTGGTCTTGGCTCATTTGAGCTTGATGCCT TGCAAGACTGGGAATATAAGTTCATGAGCAAGTATGTAAAAGTTGGAACTATCAAAACGACAGTTACGGTTACTGCACCA GAATCCACTACTGGTGAACCATCAGAATCTACCACCACCCCTGATGCTGATGCTGATGATGATGATGCTTCCAAACCTAC TGAAAATGGCCCTTCAGAAACTGAAGCTGTTAAAAGTGATGAAACCCCTTCAAATATTGATGCAGCTAAAGAGTAAAAAG GGTTGGATAATTCCCCTCAAGAAATAATGGTACACAATTGCACAAGAGGTTCTGAGAGAAATTGGTCTGGTCCTTCTTGA ATGTATTTTGCATAAGTTTTCCTTTTAGTAGTCTAGTTCTCCCTCCCCTTTTTCCTGGACTTTGCTTTTTTATTTATTTA TAAATAATGATTTTTTTAGTGTTTAACTTCACTTGGGTGTAAACTTCCTCACGTACCCCGTATGGAACTCCATATAATGT GTTACTTAGAGGCCACAATTAGTGAACATTTGGGATTATATTCTGAGCCAAGTATTGAATACATTTAGAGTATGTTTGGA TAACGATTAGAAAGTATGAAAACGAAATAATAATATGTCACGAGGTACTTTAACAGACAGTGTATCGGGATATATTGTTT TCCTATTTTCATAATTTTTAACTGGTATCCAAAAATGCTCTTAGTTTGTATGGTTTTTCTGGATAAATATAATAATTTGT TTGGACGGAGATTTTCATGATTTAATATGGCAAGGTAATAAATTGCACCAATTTGAGCAGTTTAATTTGT
CDS sequence (LotjaGi2g1v0144700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTGGAACTGTGGTCAACACTGAAGGAAGCCATAGTTGCCTACACTGGCTTCTCCCCAACCACCTTCTTCACCCT CCTCGCTATCTTCTTCGCCTTATACTACGTCCTTTCAGGCCTCTTTGGCTCCTCCGACACCCACAACCGCCATGGAACCA CCAGGGACTTCGAGCCGCAGATGGAGCCTCTTCGGCCGCCGGTTCAGATCGGGGAAGTCACCGAGGAAGAGCTTAAGAGC TACGATGGCTCTGATCCCGAGAAGCCCCTTCTCATGGCGATTAAGGGTCAGATCTATGATGTTTCACAGAGCAGGATGTT TTACGGACCCGGTGGACCTTATGCTCTATTTGCCGGCAAGGATGCTAGCCGAGCTTTAGCAAAGATGTCTTTTGAAGAGA AAGATCTAACTGGGGATATCTCTGGTCTTGGCTCATTTGAGCTTGATGCCTTGCAAGACTGGGAATATAAGTTCATGAGC AAGTATGTAAAAGTTGGAACTATCAAAACGACAGTTACGGTTACTGCACCAGAATCCACTACTGGTGAACCATCAGAATC TACCACCACCCCTGATGCTGATGCTGATGATGATGATGCTTCCAAACCTACTGAAAATGGCCCTTCAGAAACTGAAGCTG TTAAAAGTGATGAAACCCCTTCAAATATTGATGCAGCTAAAGAGTAA
Protein sequence (LotjaGi2g1v0144700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALELWSTLKEAIVAYTGFSPTTFFTLLAIFFALYYVLSGLFGSSDTHNRHGTTRDFEPQMEPLRPPVQIGEVTEEELKS YDGSDPEKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGSFELDALQDWEYKFMS KYVKVGTIKTTVTVTAPESTTGEPSESTTTPDADADDDDASKPTENGPSETEAVKSDETPSNIDAAKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 206 | 201 | 8.1E-95 | – | |
| PANTHER | 6 | 206 | 201 | 8.1E-95 | – | |
| Phobius | 12 | 38 | 27 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 39 | 228 | 190 | - | – | |
| SUPERFAMILY | 66 | 168 | 103 | 5.02E-28 | ||
| Gene3D | 71 | 169 | 99 | 5.8E-36 | ||
| SMART | 73 | 169 | 97 | 8.2E-24 | ||
| Pfam | 74 | 168 | 95 | 6.3E-15 | ||
| MobiDBLite | 175 | 228 | 54 | - | – | |
| MobiDBLite | 175 | 189 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0144700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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