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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0146100 |
| Transcript ID | LotjaGi2g1v0146100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT5G62020.1 heat shock transcription factor B2A; Swiss-Prot: sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a; TrEMBL-Plants: tr|V7C2D0|V7C2D0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0146100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52623676..52625465) extracted from Lotus japonicus Gifu genome v1.2.
TAACGCAGTACCTTCTCGCCCCTTCTTTTCTATTCTCTCTCTCTCTCTCTCTCTTACCCTCATCCTTATAATCCTAACAG AACCTTCTAGAACCACCACCATAACAATCAATCTTCACCTCTTTCTTTCTCTCTTCATGGCTCCGCCGCCACCACCACCA CCACCACCACCGGTGGAACAACACAACGCCGACTCCTACTCCCCCGCCGCGGCCTCCTCTCTCGAGTCTCAGAGATCTAT TCCGACACCGTTCCTCACCAAAACGTACCAGCTCGTCGAGGACCAATCCATCGACGACGTGATTTCCTGGAACGACGACG GATCCACCTTCATCGTTTGGAACCCCACCGTCTTCGCCAGGGACCTTCTTCCGAAATACTTCAAGCACAACAACTTCTCC AGCTTCGTTCGCCAACTCAATACCTACGTAATTAACCAACCGTCGCTGATTCTCGTTTTTGATTTTTGATTTTGATTTGA AATTTCTGATTTCGTTTTGGCTTGAATTTTAGGGATTCAGGAAGGTTATACCTGATCGGTGGGAATTTTCGAACGAGTTT TTCCGCAAAGGGGAGAAACGGCTGCTCTGCGAGATTCAGCGCCGGAAGATCTCGCCGTCGGTGTCGTCTCCCACGGCGGC GGCTGCGGTAGCTCCGACGGTGGCGGTTCATTCGCCGGTTCCGCTGACTGCTGTACCGATAAGATCGCCGTCGAACTCCG GCGAGGAGCAGGTGATATCGTCGAGTTCGTCGCCGTCGCGAGGTCCGGCGGAGCTTCTCGATGAGAACGAGAGGCTGAGG AAAGAGAACGTTCAACTGAACAAGGAGCTTGCGGAGATGAGGTTGCTTTGTAACAATATATATAGTTTGATGTCTAGCTA TGCGAGCGGCGGCGGTAACAACCAGCAAGCGGACGTCGGAAGTAGCGGCGGCTGCGCGCAGGGGAGCAGAGAGTCCGTGT TGACGGCGGTGAGGCCGCTTGATTTGATGCCGCCGGCGACGGAAACCGCTCCGGTGGAGATGAATCCGAAGCTGTTTGGG GTCGCGATAGGAGCGAAGCGAGCGAGAGAGAACGGTAGCGGTGGTGACGGTGGCGGTGGCGGAGGCGGAGGCGGGGAGGA TGATACACTTCTGCGCATGCATCAGCCACCTCCTGCGGAGGTGAAATCAGAGCCGTCAGATTGTCAGAACCATCTCGAGA ACCAGCAAACGCCGTGGCTAAATCTGTGCCGTACAACAAATCAGAGAGTTTGTAACTGACACGTGGCTATGCTTTAACGC GTGGAACATGATAGATTAGATAGGTAGTGGCGTAGGGAATCTGAGACCGAGCACGCGGAGGCGCACGTGATGATCGTCAC GTGCGTCGTTTAACCGTATGGGACCGATTCCCAGAAGCTTCCCAGGGGACGCTTACAATTCCGTCCCACAAGTCAGAAGA AAACGATACTCTTGTCCTTTTATTTTCGTCATTTCTTTTATTTTTCTTTGCTTTTTTTAGCATTAAAATTGTACTGTAGA TTTTCCTTTGGTAGTATATAGTATTTAAGATTTTGTTTAATCGATTAACTATTTTACTTGCCACTGAAAATTCAAGATTA ATAATCATAAAAGAATTATATGAATCTACATTAGCTTGATTAGGCCGATGAGGGTCGGTTGTGGGGGTTAAAAATAACTA TTTGAATTTTTAGGTCGAAATGTTAATACGTAGATGTATTTTTAGAAAAATGGTATGTCTAAATGATTTTGGGAAAAATT TAGGTTAAATTATCGTAATTCTATGCGAAC
CDS sequence (LotjaGi2g1v0146100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCGCCGCCACCACCACCACCACCACCACCGGTGGAACAACACAACGCCGACTCCTACTCCCCCGCCGCGGCCTC CTCTCTCGAGTCTCAGAGATCTATTCCGACACCGTTCCTCACCAAAACGTACCAGCTCGTCGAGGACCAATCCATCGACG ACGTGATTTCCTGGAACGACGACGGATCCACCTTCATCGTTTGGAACCCCACCGTCTTCGCCAGGGACCTTCTTCCGAAA TACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAATACCTACGGATTCAGGAAGGTTATACCTGATCGGTG GGAATTTTCGAACGAGTTTTTCCGCAAAGGGGAGAAACGGCTGCTCTGCGAGATTCAGCGCCGGAAGATCTCGCCGTCGG TGTCGTCTCCCACGGCGGCGGCTGCGGTAGCTCCGACGGTGGCGGTTCATTCGCCGGTTCCGCTGACTGCTGTACCGATA AGATCGCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCGAGTTCGTCGCCGTCGCGAGGTCCGGCGGAGCTTCTCGA TGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAACTGAACAAGGAGCTTGCGGAGATGAGGTTGCTTTGTAACAATATAT ATAGTTTGATGTCTAGCTATGCGAGCGGCGGCGGTAACAACCAGCAAGCGGACGTCGGAAGTAGCGGCGGCTGCGCGCAG GGGAGCAGAGAGTCCGTGTTGACGGCGGTGAGGCCGCTTGATTTGATGCCGCCGGCGACGGAAACCGCTCCGGTGGAGAT GAATCCGAAGCTGTTTGGGGTCGCGATAGGAGCGAAGCGAGCGAGAGAGAACGGTAGCGGTGGTGACGGTGGCGGTGGCG GAGGCGGAGGCGGGGAGGATGATACACTTCTGCGCATGCATCAGCCACCTCCTGCGGAGGTGAAATCAGAGCCGTCAGAT TGTCAGAACCATCTCGAGAACCAGCAAACGCCGTGGCTAAATCTGTGCCGTACAACAAATCAGAGAGTTTGTAACTGA
Protein sequence (LotjaGi2g1v0146100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPPPPPPPPPPVEQHNADSYSPAAASSLESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPK YFKHNNFSSFVRQLNTYGFRKVIPDRWEFSNEFFRKGEKRLLCEIQRRKISPSVSSPTAAAAVAPTVAVHSPVPLTAVPI RSPSNSGEEQVISSSSSPSRGPAELLDENERLRKENVQLNKELAEMRLLCNNIYSLMSSYASGGGNNQQADVGSSGGCAQ GSRESVLTAVRPLDLMPPATETAPVEMNPKLFGVAIGAKRARENGSGGDGGGGGGGGGEDDTLLRMHQPPPAEVKSEPSD CQNHLENQQTPWLNLCRTTNQRVCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 24 | 293 | 270 | 2.6E-118 | ||
| PANTHER | 24 | 293 | 270 | 2.6E-118 | – | |
| Gene3D | 30 | 130 | 101 | 8.1E-38 | ||
| SMART | 35 | 128 | 94 | 2.0E-55 | ||
| SUPERFAMILY | 36 | 128 | 93 | 2.45E-34 | ||
| Pfam | 39 | 128 | 90 | 1.2E-30 | ||
| PRINTS | 39 | 62 | 24 | 3.4E-20 | ||
| PRINTS | 77 | 89 | 13 | 3.4E-20 | ||
| ProSitePatterns | 78 | 102 | 25 | - | ||
| PRINTS | 90 | 102 | 13 | 3.4E-20 | ||
| MobiDBLite | 158 | 189 | 32 | - | – | |
| MobiDBLite | 158 | 182 | 25 | - | – | |
| Coils | 182 | 209 | 28 | - | – | |
| MobiDBLite | 281 | 323 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0146100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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