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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0147900 |
| Transcript ID | LotjaGi2g1v0147900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900; TrEMBL-Plants: tr|A0A072TFX1|A0A072TFX1_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0147900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52986989..52992902) extracted from Lotus japonicus Gifu genome v1.2.
CTTACAATTCTCTTATTGATGGTTTATGCAAATCGGGGAGAGTCTCTCATGCTTGGAAGCTTCTTGATGAGATGCATGTT AGAGGTCAACCAGCCAATATAATCACCTACAGTTCTTTATTGGACGCTTTATGCAAAAGCCATCATGTTGACCAAGCAAT TGCACTAATCAAGAAAATTAAAGACCAGGGTATTCAGCCTGATGTGTGGATGTACAATATACTTCTGGGTGGACTGTGCG AAGGTGGAAGATTGAAGGATGCACAAGAGATTTTTCAGGATCTTTTGAGAAAAGGCTATCATCTAACTGTCCAAACATAT ACTATTATGATCAATGGGCTTTGTAAAGAAGGCTTGTTTGATAAAGCGTTGGCCTTATTGTCAAAAATGGAAGATGAGGG CTGTATTCCTGATGCTATAACTTTTGAAATAATTATTCAGTCACTCTTTAAGAAAGGTGAGAATGACAAGGCAGAGAAAC TTCTTCGTGAAGTGATTGCTAGAGACCTATTGTAAGAGTAAAACTGGGTAAGATACTTTCTAGTTACACATTTTTAATTT TGATGACAATCATCAAATCTATTTTATTGTCTTTCATTTTATAGATACACGCGATAGCACCTTAGTTTTGATTTTAAGTC ATGGGGTGTTAGGTTCATATTGATATTGTAACAATAACAATGACTGATTTATTGATTTTTTTTTTTTGAGTCTTCACATA ACTATACTTTTTGGAAGGGGCACTTTTGTGCAATGGTTAGAGTTGCTGGTTAGAGTTGCTTCGTTGTGACTAGGAGGCCA CATGTTCAAGTCCTAGAAGAATTAACCAATTAAAAATGCAAGGTATGGAGGCTGCCTACAATACATGCACATTAGGTCCC ATATCATTCTCTTAACCTGGGCATTGTTGGAGCTTGATAGCACTGGGATATAACAATCTTTTTTTTTTCTCTCAATATAT TGTCATTGTGCTTCATCTACTCTAATAGCTTGATAGCACTGGGATATAGACTGTATGCTGATGAGCAAAGTGCTGTCCTC ATCAGATGTAGACCCTATACTGCTATATCAGCTCTTTTATGGTTATTATTCGTGGTGATTTAATGCATAAAGATTATGTT TCTTCAGATCACATGATTCAATGGTAAATGTTGTTTGAGGGTGAGGGTCTAATTCATTTTATACATAGTAATTACATCCC ATATTGGACTTTTGATTAATCTGAAGCATTTGATTCAAAGTTTTTGTACTCTTAACTGTATATGAATCATAATTTGTGAC TGTGCATTTCTGTTTTCTTTTTAGACTTGCTTTTTATATATTATTCTAAATGACCAAACATAAACTCAGAATCACAGGCT GAAACTTCCACTATACTTGTGCTAGTTAGCAAGTAAAGTTTAGTTCTTGACTTGGAGAGCCCTGACAACTTATTATTGCG TGGATTGACAGGCATTGATACTGAAAATAAAGGAATGCCTATGATATGCTCTTAAGTCTTAAATCCTAAGTCATTGATAA CTAATCAAATGAACCAACACAATAAATGGACTCTGTAACTATGTTGTCAATCCCAGTTCCCAGCTGGGACTCGTCGTGGC CATCCTAAAATTGGGATTGCGGGATACCGGAAAGTGGGATGGCAGGGATAGTGATTTTTTGTTTTTCTTTTGTGAAATTT TTACCATATATTTACATACTAAATCAATGATAAATACAGGGTAGAACAGAGGAGAAGAGGGTTCGAAGTGGGTAGAACAA AGGTGACGCTCGCCAGAAAATGGTCAGAGATCTTGTGGTGGTCGCCGGCCAGTTCTGGGTCGAAGGAATGGAGGGTCGAA GAGAGGGAAAGGCTGAACAAAATCAAAGTTCTAGGGTTTTTACTATTGTGGAAACCTGAAAATCCCCCTAAGTAAAAAGC CCCAACATTTACATTTTGGGGGCATTTTTGGAAATTTATGACCTTCGTTATCCGGCCAGGATAATGAACTTGGCAGGATG GGAAAATTCGTCCCAGGGCATGGGTGGGATAGGAACCTGAGATCCTGCTGGATCCCGCTGGGATTGACAACTTAATTTTG TTGTTTTAAATTTTCTGCAGCTGTGCTATGACGATAGATGTCTTATATTGCCTTCATGAAATGGGAAGCTTATAAACTTC TGCTGGACTGTTCTAACTCTTTCAATTGTTCTCTTACTTCTCTATAAATAGGCCCTTGAAGGTTTGACAGGTTCATGGCA AAAGAGTTTCCCAAAGGAATGGAAGTTGTCATGGGTTTGTGATTTGTTATATTTTCGGAGTTTCAGCTTTTGAAAAGCAT AACAACTGGAATGATTTAAAAATTGTGTATGGAAATTATCATTGGGCTAGTAACTTCATTATTACTTACCTTGCCCTGAG CTAGAATGGATCTCACTTTTCTCCTACAAGACCAAGTTGGTGGCCTCAAGTTTTCTATGAAAACCAGTGGGTTGATGTCA GATGCATTCCTGGTGCTTTGGTCTTTAAACTGGGTGACATGATGCAAGTAAGCTCATCCATTCTTTTTTGCAGAGATTTA TACATTTCATAAGAGAAGCTTTTGAGTTCCTTAGAAGGCAAGCATAAATTCAACAACCAGTATTATTGTTATGATGCTAC ACTTGACATTCAACAATATGCCTTGTATGTTTGATAAATTTACTCAAACTTGTGGCTGCCAATTGCAGCATCTGCTTGCA GCTGGTATTTCTTTTTTTTTCATGTGAAGTTTCAACCAAACATATAAATGCCATATAAATTTACCAATTTTATATCATAT TTAAGTTCATCTAGTCCTGGAACTAGGAACTACTTATCACAGTAAACTTCATCTTCCCATGGCAAAAATAATTTGTTTGT AATGGAATTGCTGGAAAGTATTTGCAACTCTTATAGAAAGGCTGGAAGGAATTTTCTATCTGACTTAATGTGTCAGCCTT TTTTATAGCTAATCACTAAATAGTATTTGTACTTTTAACTGTATGGTTCTGTTTCTTACACATTTATTTTTTTGAATTTT CAGCAGCTGTGTTATCAAGATAGATGTCTTATATTCCCTTCATAAGTGAAATGGGAAGCTTATAAACACCTGCTGGGTTG TTCCAACTTCCAACTCTTTTAATTGTCCTCTAAAAATGGGCCTTTGAACGTTTGACTGGTTCATGGCATAAGAGTTTCCC AAAGGGATGGAAGTTGTAATGGGTTTTGTGATTTGTTATAGTTTCGGACTTTGAGCATCTGAAGAGCATCACTGGAATGA TTTTAAAGTTGTGTATTGAAAGTATCATCAGGCTTGTCAGGCAAACTGGTGTTTAGGCATTTAATCTAGAAGTTGGTCAT GACTTGTGAATGAATTGTTATATTGTCACTATTTGCAGCCTAACTTATGACAGAGAACAGCTTATCTTCAGCTTCCTCAG AGACATCCGCAGTCTGAGCCTACTCTGCTTGTTGTTTTCTTTCAATTCTGCACTTCTATAATGTATAAATACATAGAACA AATGTGATAAAAGAGATGGAGAAAAAAAGGAGGAGATTATGCAGCTAAGGCCTCATAAATGCAAAGATATCTGTAACTGA ATATATTCAAGAGTTCTGCAACAATGCACTAAAATTAATCATTGCTACCGAGTAAAGTTGGTTAGAATTTTACAGTCAAA GCTGTGCACACAAGTTGCATTTAACCAAAAGCATACAAAAAATAAGATTTTAATTGTAGCTACACAAACTAAGCTATTTT TTCTGACCTTTAGAAAAGTCTCAAACTTTTAACAGTCTGAAACTTGGAGAATGTCATAAATTATCATATTCATTAAGCTA CAGTTCTAGTTTGTCTCCTTCTTGGCAATATCTGATTGCATAAAGGAGCTGATTATCTTTTCAGCACTAGAACACTTCAG GTGGTGAAGCATGTGCAGCTGCAAGGAATCATAATTTGCTTAATGTGAAAGTGAGAGACTCAGGTATGTTCTGTTTGCAA ACTCTTCAATCTTGGTTGAATGAGTCCGAGAGTTTATTTTCCATGTAATAACTTACTTTATTTGCAAACTGTGCACATAA AGTCTCTGCATTATCATTTGGACTTTTCTTATTGTTGAAAATTTGCTGTTAGATAAACTCTAAGCTTATAATTCTCATTT AGGTTTGATATTAAGGCCTACTGGTTATTTAGGCAAAATATCTCATGTTTAGTAATTGGATTTAAAATAAACATTTAACT TGGGTAAGGTTCGTTCAAAAAAAAAAAACTTGGGTAAGGTTATATAGTCATGCTGTGTTGTTTAGTAAGCTACATAATAA CTATGTTGAATCAGATTTTCGTAGTTGTTCTGTATTGTTTGATAAACGACATGATGTTGAGTCATAAAACTACCCAAATA CTTGAAGTTTCAAATAGATACATCGATCAATAACTTTAAATCCTATATACCTACATATCAGACACATATTCATGCTCTCA ATATTTACTTCACATCTTGAAAGGCTCCAAGGAAGAGTTGCCATCGAGGCCTTTTTCAATACGATGTGCTATGACGTCTT TTATAGTAGCGTCCCTGTAGATTGGTGGGTTTTCTTCTGATAACAATTCCTTTATTGGACCAATAACCTTTGACATTCCC TGTGATGATATGTTTACGAAGAAGCTTGCTATGGAAATTCTAGGGCCTACATGCCTTGATAAAACCCGGTGATAAACACT GCTGAACTGGTCATTTGTCATAAGCAGCACCAATAAAAGGGGGACTGATAGATATACTCAACAAAATTTGTGTATGTGAG CATTTTATATTTAAACCGCAGAGCTTTGATGAACGTATCAACAGAAGCATTGAAAGCTGGTAGGAAAAATGAGATAAGCT ATGGTGACTATAAAGAGGCATGATCTCATTTTTTTTCGATAATTATATGGTCTACTTGTCTTTCCTTTTGAAGTTATGGA TTGGCAACCCTATTTCATGTGTAATTCTTTTTTAAGTTTGTGTTGTTAGTTGTTCCAAAGAAAACAAGCACAACTAGGAT TATCACAGAGAGTTTCATGCAATTGTTTACTGTACTTACCTGCAGGAGATCCCCAATGTTTACCACGAGAACCCATGGAC TGGAGGAACATCAACCCATTGATTCTGATGAAGAACTTGAAGACCACCCATCTGATCTTGCCGAAGTATTGTCATGAAGT CCCTATCAGAATGCTTTGAGGTGCCCATAGTTAATTCGGGCTCAGGGCATGCGGGATAGTAGTGACCCAAAATAAATTGT CCGTCAGCCGAGTCGATTTCGTTAAGGTAAAGAAGGATTAAGATGGTAAAGCCCAACACTCTTACTTTCTTTGAATATAC AATGACAATGTCTCTGAAATGCATACTCATTTTATCAAAGACAAAATAAAAGGTCCAAATTTGATTTTGTTAGCACTCTG CAACTGAAGTCCACAAGTGACATTGACCTGAAGCCATGTAACTAGTATGAAATATTAGAAAGTTGGATGCACATTCCTGT ATACAATTTTTGTTTTACATTTAAGCCTGTGTCATGTAAAGATATGAAATACAAGGAAGTTTGCATATTCTAGAGTAACT GTTTAACTGTTTAGCTTATATATATAAAACTGCCAAGTTGGGGTGCTTTTGATTGGCTTGTTGAGAATGTTTTCTATTTT TATTTTTTTGATTTTACTAATAATAACGAGTAATGATATATACACACCTCCTTATTTATACACTTCATTTCCACCTATTT TTATTTCTATCTCTCTCCTCTTATCATCTATCACATCTTATACTTTCTCTTTCTTACTTTTTCTTTTCTTCCTATCTCTC TCCTCCTCCACCTCTTTCCACCTCAATTTAGAGGTGTGGACAAATAATTATTGAATAATAACATAAGGCAAACC
CDS sequence (LotjaGi2g1v0147900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGTTAGAGGTCAACCAGCCAATATAATCACCTACAGTTCTTTATTGGACGCTTTATGCAAAAGCCATCATGTTGA CCAAGCAATTGCACTAATCAAGAAAATTAAAGACCAGGGTATTCAGCCTGATGTGTGGATGTACAATATACTTCTGGGTG GACTGTGCGAAGGTGGAAGATTGAAGGATGCACAAGAGATTTTTCAGGATCTTTTGAGAAAAGGCTATCATCTAACTGTC CAAACATATACTATTATGATCAATGGGCTTTGTAAAGAAGGCTTGTTTGATAAAGCGTTGGCCTTATTGTCAAAAATGGA AGATGAGGGCTGTATTCCTGATGCTATAACTTTTGAAATAATTATTCAGTCACTCTTTAAGAAAGGTGAGAATGACAAGG CAGAGAAACTTCTTCGTGAAGTGATTGCTAGAGACCTATTGTAA
Protein sequence (LotjaGi2g1v0147900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVRGQPANIITYSSLLDALCKSHHVDQAIALIKKIKDQGIQPDVWMYNILLGGLCEGGRLKDAQEIFQDLLRKGYHLTV QTYTIMINGLCKEGLFDKALALLSKMEDEGCIPDAITFEIIIQSLFKKGENDKAEKLLREVIARDLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 73 | 73 | 2.7E-20 | ||
| PANTHER | 2 | 140 | 139 | 4.7E-36 | – | |
| PANTHER | 2 | 140 | 139 | 4.7E-36 | – | |
| Pfam | 5 | 35 | 31 | 4.1E-6 | ||
| ProSiteProfiles | 9 | 43 | 35 | 12.068 | ||
| TIGRFAM | 11 | 45 | 35 | 6.2E-8 | ||
| Pfam | 43 | 92 | 50 | 2.0E-14 | ||
| ProSiteProfiles | 44 | 78 | 35 | 11.477 | ||
| TIGRFAM | 47 | 78 | 32 | 2.0E-5 | ||
| Gene3D | 74 | 144 | 71 | 8.6E-21 | ||
| ProSiteProfiles | 79 | 113 | 35 | 13.318 | ||
| TIGRFAM | 82 | 115 | 34 | 1.4E-12 | ||
| Pfam | 110 | 140 | 31 | 4.0E-8 | ||
| ProSiteProfiles | 114 | 147 | 34 | 8.868 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0147900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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