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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0148500 |
| Transcript ID | LotjaGi2g1v0148500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G63080.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial; TrEMBL-Plants: tr|A0A072VJ30|A0A072VJ30_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0148500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:53417498..53423040) extracted from Lotus japonicus Gifu genome v1.2.
GTCAAATTATGAAGAATGTGTTTTCCTTCATCCTAAAGTTAATGTAACCAACAATTGTGGTATACAATTATTTAATGGAT GGATATTGCTTTGTGATTGAAGTAAGCAAGGGTAGGTATATATTTGACACTTTGCCTCAAAGATGAGTCACTCCAAATGT ACGGAGCTACAGTATCATTATCCATGGATATTGTAAGATTGAAAAGGTCAATGAGGCATTGCGTCTCTTCTAGCAAATTC ATTTTAATAACATTATTCCAAAACATATAACCTACAACACTCTTGTTGACGGTTTATGCAAGTCGGGCCGGATCTCTTAC GCTTACAATATAATTGATGAGATTCAACCCCCAGATTTGATCTCCTACACTTCCTTATTGCATGCTTTTATGCAAAATGA ATATTATTGACAAGTCGCTCGCTCTAATTAATGCAATGAAAGACCAAGGTGTTCAGATGGATGTTTATCCGTATAATGTG CTTATGGACGGAATGACCAAATCTGGTAGATTCGTGGATGCAATAGAAATATTTCAGATGCTTCAAACCAAAAGGTATCC TCTAACTGTTCCTTCATACAATACCATGATCCATGCCCTTTGTAAAGAGGATTTGCTCGACGAAGCATTGAGATTATTTT CAGAAATGGAAATCAGGGATTGCCTTCCTGATGCTATAACATTCGATATTATTATTCGCACCCTACTAAATAAAGGAGAG AAAGTTAAGGCGGCTGAGTTTATTCACATTATGAATGAGAGATTTGGTATATTGGATAGGTAAGAGCTTGTTCAAAAACT AAGCCACATGCCAAACATCATTCCGGTTAGCTCTTAGATTTGATTATTGACTTGAACCGTTTAATATTCTATTATGCTCT ATTCGATTTCACTGTTTTTCTTCTTCTTTGATTTGATTATAGAAGCCCCTGTTAAATTGTGTAGATGTAGAGGTTTTGAG TCAATATGAATCTTGTGTTCTGATAGAACTTTTTTCATGTCAGGACATTATTATAGTTTTTTTTCTTCTTCAATTGCAAG AGAGACGTTTTTACCTTTTGACTTAGTCATAGTGCCTCTTATGTGATTTCAAATGCATAGTTCCATATATCTACGACTGC TATTCTCTCATTTCTGGGCACATTTTTTGTGCATTTATTTTGCTTCTAGCATTTACTTTAAGCTTGAAGCTAGGCCTTGA AATTGACAGATTTTTCAATGAAAGATGAATATTTCACAATTGACCACATTTGACACTTCTACTGTTATCTCACATGTTTC TTTTTGTGATAAGATGTATCTTGTTGCTTAAAACATGTAAGAGGAGTTCAACTAAATAAGCTGCTTGTTTTATTATAAAC TATACCACCACATATATTTGATAAAGAAAGTAAGTGATGTGTGGTTTCAGGTATGAAATTGGAAAGTTGGTAGGGAAAGT CAATCTAGGAGCTTCTTGGGTAACTATTCATTGTGATAGGATCAATAAAGTATTTTGATCTACAAGGGTAATGAAACAAG GTGATATAACAATAAAATTTGACGCAAGAGATAGTGTGATTCATTGTTTAGAGCACTAGTTATATTCATGGTTGTGTCCT CTCATGGAAGAAAAAGTTTTGATTGGTCCAGAGCAATGAGACATTTTAACTGATTTGTATGAGTGATGAAATTATTTGAT GGTCATGATAGTAGTGTCATTCTATATGACATGACCTATTCTTCTTGCAAAGTTTGTTTAGATGTAAGAAATTTGGAGTG TTTTTTGTTTTTTTTTTTCTTTTTCAGGGGTGGGGGGCTAACCTTTGCAACAGAAAATGTTTTCAAATGCTTGAAACATG TTCTTTATGATCCTACCTGAATATTTTAACTTTTCAAACCATGCTCCATAATGTAATTTGGATGTTGATCTTCAATTAGA CGTCATGTCATAGATGAGGTACTGTCAAAAGCAAGTTGTGACTTTGATCTATGGCTGCTACTAGTTTAGGCTTGGGTGGC TATTGATAGTGTGGGTGGTGGATTTGGCTGACAGAGATGGTAGGTGTTAGTTTGGTCACTTCATTGCTTCCCGTTTCTCC TTTGATGTTCCTTTGCTGCTTCTGATTATAGTGGTGGTTGCTTGCTTGCTTATTTGTTATTACATTTGTGCTCTTGTTTC TTCTATGGTAAAATTGTTTTAAGGCTCTATTTTGTGTCTCACTCCCGGTATGGTAATGTCCCTTCATAATTACTTGCCCT TTACTTGTACTGTTTTAGTTTGATATTTTGGGTTGTGGCTTTAACTTGAGTTGTGATTGTTAGGTACCAAGACAACAGAA AAGGAAATCTTACAGGATGGCTTCTTTAGAGTTAAAGTAGAAGATTGACCGATTTGGTATTGTTGTGGTGAGTGTATGGT GTATCTTGGCCGATTTGATATCGTTTTATGCTGTTGTTGAGACTATTGGAGTTTGAGTTGATACATTGAAGATGTTCTTT GCACTAAAAAAAAATATTAAGAGGCAATTTTAAGCTCCTTTGAGACATACTGCATTGCTCTTCTTAATGAATGCAAAAAT AACAATGGTATGCTAAGAACACTTATACAACTCTGGTTTTTCGTTCAAATTTAATAGGTATATTGGTTGATGCATTAAGG AAGGAGGGAAATGTCAAATTATGATGGAATGTGTTTTCCTTCATCCTGAAGTTAATGAAACCAACAATTGTGGTATACAA TTATTTAATGGATGGACATTGCTTGGTGATTGAAGTAAGCATGGCTATGTATATATTTGACACTTAGCCTCAAAGATGAG TCACTCCAAATGTACGGAGCTACAGTATCATTATCCATGGATACTGAAAGATTGAAAAGGTCAATGAGGCATTGCGTCTC TTCTAACAAATTCATTTTAATAACATTATTCCAAAACGTATAACCTACAACACTCTTGTTGACGGTTTATGCAAGTCGGG CCGGATTTCTTACGCTTACAATATAATTGATGAGATTCAACCCTAAGATTTGATCTCCTACATTTCCTTATTGCATGCTT TTATGCATAACGAATATTATTGACAAGTCTCTCGCTCTAATTAATGCAATGAAAGACCAAGGTATTCAGCTGGATGTTTA TCCGTATAATGTGCTCATGGACGGAATGACCAAATCTGGTAGATTCGTGGATGCAATAGAAATATTTCAGATGCTTCAAA GCAAAAGGTATCCTCTAACTGTTCCTTCATACAATACCATGATCCATGCCTTTTGTAAAGCGGATTTGCTCGACGAAGCA TTGAGATTATTTTCAGAAATGGAAGTCAGGGATTGCCTTTCTGATGCTATAACATTCGATATTATTATTCGCACCCTACT AAATAAAGGAGAGAAAGTTAAGGCGGCTGAGTTTATTCATATTATGAATGAGAGATTTGGTATATTGGATAGGTAAGAGC TTGTTCAAAAACTAAGCCACATGCCAAACATCATTTCGGTTAGCTCTTAGATTTGATTATTGACTTGAACCGTTGAATAT TCTATTATCCTCTATTCGATTTCACTGTTTTTCTTCTTCTTTGAGTTGATTATAGAAGCCCCTGTTAAATTGTGTAGATG TAGAGGTTTTGAGTCAATATGAATCTTGTGTTCTGATAGAACTTTTTTTATGTCAGGACATTATTATAGTTTTTTTTCTT CTTCAATTGCAAGAGAGACGTTTTTACCTTTTGACTTAGTCATAGTGCCTCTTATGTGATTTCAAATGCATAGTTCCATA TATCTACAACTGCTATTCTCTCATTTCTGGGCACATTTTTTGTGCATTTATTTTGCTTCTAGCATTTACTTTAAGCTTGA AGCTAGGCCTTGAAATTGACAGATTTTTCAATGAAAGATGAATATTTCACAATTGACCACATTTGACACTTCTACTGTTA TCTCACATGTTTCTTTTTGTGATAAGATGTATCTTGTTGCTTAAAACATGTAAGAGGAGTTCAACTAAATAAGCTGCTTG TTTTATTATAAACTATACCACCACATATATTTGATAAAGAAAGTAAGTGATGTGTGGTTTCAGGTATGAAATTGGAAAGT TGGTAGGGAAAGTCAATCTAGGAGCTTCTTGGGTAACTATTCATTGTGATAGGATCAATAAAGTATTTTGATCTACAAGG GTAATGAAACAAGGTGATATAACAATAAAATTTGACGCAAGAGATAGTGTGATTCATTGTTTAGAGCACTAGTTATATTC ATGGTTGTGTCCTCTCATGGAAGAAAAAGTTTTGATTGGTCCAGAGCAATGAGACATTTTAACTGATTTGTATGAGTGAT GAAATTATTTGATGGTCATGATAATAGTGTCATTCTATATGACATGACCTATTCTTCTTGCAAAGTTTGTTTAGATGTAA GAAATTTGGAGTGTTTTTTGTTTTTTTTTTCTTTTTCAGGGGTGGGGGGCTAACCTTTGCAACAGAAAATGTTTTCAAAT GCTTGAAACATGTTCTTTATGATCCTACCTGAATATTTTAACTTTTCAAACCATGCTCCGTAATGTAATTTGGATGTTGA TCTTCAATTAGACGTCATGTCATAGATGAGGTACTGTCAAAAGCAAGTTGTGACTTTGATCTATGGCTGCTACTAGTTTA GGCTTGGGTGGCTATGCTTCCCGTTTCTCCTTTGATGTTCCTCTGCTGCTTCTGATTATAGTGGTGGTTGCTTGCTTGCT TATTTGTTATTACATTTGTGCTCTTGTTTCTTCTATGGTAAAATTGTTTTAAGGATCCATTTTGTGTCTCACTACCGGTA TGGTAATGTCCCTTCATATTTACTTGCCCTTTACTTGTACTGTTTTAGTTTGATATTTTGTGTTGTGGCTTTAACTTGAG TTGTGATTGTTAGGTACCAAGACAACAGAAAAGGAAATCTTACAGGATGGCTTCTTTAGAGTTAAAGGAGAAGATTGACC GATTTGGTATTGTTGTGGTGATTGTATGGTGTAGCTTGGCCGATTTGATATCGTTTTATGCTGTTGTTGAGACTATTGGA GTTTGAGTTGATACATTGAAGAATGTTCTTTGCACTAAAAAAAAATATTAAGAGGCAATTTTAAGCTCCTTTGAGACATA CTGCATTGCTCTTCTTAATGAATGCCAAAATAACAATGGTATGCTAAGAACACTTATACAACTCTGGTTTTTCGTTCAAA TTTAATAGGTATATTGGTTGATGCATTAAGGAAGGAGGGAAATGTCAAATTATGATGGAATGTGTTTTCCTTCATCCTGA AGTTAATGAAACCAACAATTGTGGTATACAATTATTTAATGGATGGGCATTGCTTGGTGATTGAAGTAAGCATGGCTATG TATATATTTGTCACTTTGCCTCAAAGACGAGTCACTCCAAATGTACGGAGCTATAGTATCATTATCCATGGATACTGTAT GATTGAAAAGGTCAATGAGGCATTGCGTCTCTTCTAACAAATTCATTTTAATAACATTATTCCAAAACGTATAACCTACA ACACTCTTGTTGATGGTTTATGC
CDS sequence (LotjaGi2g1v0148500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTATGCAAAATGAATATTATTGACAAGTCGCTCGCTCTAATTAATGCAATGAAAGACCAAGGTGTTCAGATGGA TGTTTATCCGTATAATGTGCTTATGGACGGAATGACCAAATCTGGTAGATTCGTGGATGCAATAGAAATATTTCAGATGC TTCAAACCAAAAGGTATCCTCTAACTGTTCCTTCATACAATACCATGATCCATGCCCTTTGTAAAGAGGATTTGCTCGAC GAAGCATTGAGATTATTTTCAGAAATGGAAATCAGGGATTGCCTTCCTGATGCTATAACATTCGATATTATTATTCGCAC CCTACTAAATAAAGGAGAGAAAGTTAAGGCGGCTGAGTTTATTCACATTATGAATGAGAGATTTGGTATATTGGATAGGT ACCAAGACAACAGAAAAGGAAATCTTACAGGATGGCTTCTTTAG
Protein sequence (LotjaGi2g1v0148500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLCKMNIIDKSLALINAMKDQGVQMDVYPYNVLMDGMTKSGRFVDAIEIFQMLQTKRYPLTVPSYNTMIHALCKEDLLD EALRLFSEMEIRDCLPDAITFDIIIRTLLNKGEKVKAAEFIHIMNERFGILDRYQDNRKGNLTGWLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 26 | 26 | 5.93 | ||
| Gene3D | 2 | 141 | 140 | 6.5E-29 | ||
| PANTHER | 4 | 120 | 117 | 4.9E-24 | – | |
| ProSiteProfiles | 27 | 61 | 35 | 10.063 | ||
| Pfam | 31 | 57 | 27 | 2.3E-4 | ||
| TIGRFAM | 31 | 59 | 29 | 1.2E-5 | ||
| ProSiteProfiles | 62 | 96 | 35 | 12.584 | ||
| Pfam | 63 | 108 | 46 | 9.1E-15 | ||
| TIGRFAM | 65 | 98 | 34 | 3.2E-11 | ||
| ProSiteProfiles | 97 | 127 | 31 | 6.621 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0148500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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