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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0149600 |
| Transcript ID | LotjaGi2g1v0149600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gag-pro-like protein; TAIR: AT5G53990.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q7LC44|ARC_HUMAN Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A0L9T5V5|A0A0L9T5V5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0149600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:53872660..53874550) extracted from Lotus japonicus Gifu genome v1.2.
GCAAATCAACACAGAGCTAAGAGACAACATGACTCAAATCAAGGAGCAAATGTCTGAGTTCATGGAAGCTATCAAGGAAG CTATCAGAAGAGACAGAGAAGAGGAGCACCAAGGAAGGAGTGAAGGGCCGTCCTCCACTCCCGAGTTTCCACCTGGCTTC TTTCCTTTACATGTGCATGCTCAAGGGGTCCATCCGCAAGGGATAGCTATGCCTCTAACAGTACACCCGAACATGCCCTT CCAGCAAACCTCCCAGTCTCACCCAGCCCAATTCCCGCCTTACGGCCTCCCTCCTAGTTATGCACCCCCAGTTGTTGTCA ATCAAACAGATGGTAATCCACCAACCACTACTCAAGTAAATCCTACCCAATCTCAAGGCCCATCAGTCAGTAACATCGAA GCGCCACAAGTTCACATACCTTTCCCATCTGCTCCTCCACATGCTGCTATGCCAAGCCACTTGCCACCTCTAACCACTTA TCAACAAGATATATCCCAAGCATATCTCCCTCACAACTCACTGAACATCCTTCCACCACATACCCTCAACCTCAGTGCCC AAGGAAATCCGCCAACACCTCATGCCGCTTTTCCGCCAAACCACTTTTCCGAAGATGGTCAATCCAAAGAAAGGCTACAG TTACTCGAAGAAAGGATGCGAGCTGTGGAGGGTGGAAATTATGGTTTTAATGATGCAGCAGATTTATGTCTGGTCCCAGA TGTTGTGATTCCACCAAAGTTTAAGGCTCCGGAGTTTGAAAAATACAGGGGCACCACATGTCCAAAAAGTCATCTAACCA TGTACTGCAGAAAAATGGCCGCATGTGCCCATGATGAGAAGTTATTGATTCACTTCTTCCAGGATAGTTTGGCCGGAGGA GCCTTGAACTGGTACATGCATTTGGAGCGTACCCGCATTCGTAGTTGGGGAGACTTGGCCGATGCATTCTTGAAACAGTA CAAGTACAATGCTGACATGGCCCCTGATAGGATGCAACTCCAGAACATGCTGAAGAAGGAAAGCGAGACTTTCAAAGAGT ATGCCCAGCGATGGAGAGAGTTGGCCTCTCAAGTTGAACCTCCCCTGTCTGAAAAGGAGATTGTGTCAATGTTTATTGAT ACTCTCCAGTCACCCTTTTACGATAGAATGGTCAGAAGTGTGTCGTCTAACTTCTCTGACATGGTCATCATAGGGGAAAG AGTGGAGAATGACATGAGAACTGGAAAGATTACGACAAGTCCTCTCACAACAAGCAATGTAAAGAAACATTTTGTGGGGT TTGCAAAGAAGAAAGAAGGAGACACCAATGCTGTTATGGCTCATCAAGGAGGATATTCTCAGTGGAAAACTGACCAGAGA CCTACCCACTTCTACCATGCACCTAACATACCTCAGATCCCTTCCCAATACATAATCGCAGCCACACAATCCACTTACCC GCAACCTCATCAGCCAATAACCCCATACACCGTGACCCAACCAGCTCCACCACAACCACCCAACTTTGTACCACCTCAAC AAAACCCACCTCAAAACCAAAACTTCATACCCAACACAAACCAAAGGAATAGGGAAAGGAATCAGGTCCGCTTTGACCCA ATACCCATGTCCTACACCGAGCTCTTGCCACAGCTTATCCAAGGATCTCTTGTAACTCCTTACCCATTAAAACCAGCTCA ACCACCATACCCGAGGGGGCATGATGCAAACACCAGATGTGACTATCATGCTGGGTACATCGGCCATTCCACTGAGAATT GCATGTCGTTGAAATATAGAGTGCAGAAGTTGATTGATGCCAAGCTATTGAATTTTTCTGAAAAAACCTAACATTGGGAC TAATCCATTGCCCGGCCATGGGAGCTCTAATGTCAATGCAATAAGCGAAAA
CDS sequence (LotjaGi2g1v0149600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCAAATCAAGGAGCAAATGTCTGAGTTCATGGAAGCTATCAAGGAAGCTATCAGAAGAGACAGAGAAGAGGAGCA CCAAGGAAGGAGTGAAGGGCCGTCCTCCACTCCCGAGTTTCCACCTGGCTTCTTTCCTTTACATGTGCATGCTCAAGGGG TCCATCCGCAAGGGATAGCTATGCCTCTAACAGTACACCCGAACATGCCCTTCCAGCAAACCTCCCAGTCTCACCCAGCC CAATTCCCGCCTTACGGCCTCCCTCCTAGTTATGCACCCCCAGTTGTTGTCAATCAAACAGATGGTAATCCACCAACCAC TACTCAAGTAAATCCTACCCAATCTCAAGGCCCATCAGTCAGTAACATCGAAGCGCCACAAGTTCACATACCTTTCCCAT CTGCTCCTCCACATGCTGCTATGCCAAGCCACTTGCCACCTCTAACCACTTATCAACAAGATATATCCCAAGCATATCTC CCTCACAACTCACTGAACATCCTTCCACCACATACCCTCAACCTCAGTGCCCAAGGAAATCCGCCAACACCTCATGCCGC TTTTCCGCCAAACCACTTTTCCGAAGATGGTCAATCCAAAGAAAGGCTACAGTTACTCGAAGAAAGGATGCGAGCTGTGG AGGGTGGAAATTATGGTTTTAATGATGCAGCAGATTTATGTCTGGTCCCAGATGTTGTGATTCCACCAAAGTTTAAGGCT CCGGAGTTTGAAAAATACAGGGGCACCACATGTCCAAAAAGTCATCTAACCATGTACTGCAGAAAAATGGCCGCATGTGC CCATGATGAGAAGTTATTGATTCACTTCTTCCAGGATAGTTTGGCCGGAGGAGCCTTGAACTGGTACATGCATTTGGAGC GTACCCGCATTCGTAGTTGGGGAGACTTGGCCGATGCATTCTTGAAACAGTACAAGTACAATGCTGACATGGCCCCTGAT AGGATGCAACTCCAGAACATGCTGAAGAAGGAAAGCGAGACTTTCAAAGAGTATGCCCAGCGATGGAGAGAGTTGGCCTC TCAAGTTGAACCTCCCCTGTCTGAAAAGGAGATTGTGTCAATGTTTATTGATACTCTCCAGTCACCCTTTTACGATAGAA TGGTCAGAAGTGTGTCGTCTAACTTCTCTGACATGGTCATCATAGGGGAAAGAGTGGAGAATGACATGAGAACTGGAAAG ATTACGACAAGTCCTCTCACAACAAGCAATGTAAAGAAACATTTTGTGGGGTTTGCAAAGAAGAAAGAAGGAGACACCAA TGCTGTTATGGCTCATCAAGGAGGATATTCTCAGTGGAAAACTGACCAGAGACCTACCCACTTCTACCATGCACCTAACA TACCTCAGATCCCTTCCCAATACATAATCGCAGCCACACAATCCACTTACCCGCAACCTCATCAGCCAATAACCCCATAC ACCGTGACCCAACCAGCTCCACCACAACCACCCAACTTTGTACCACCTCAACAAAACCCACCTCAAAACCAAAACTTCAT ACCCAACACAAACCAAAGGAATAGGGAAAGGAATCAGGTCCGCTTTGACCCAATACCCATGTCCTACACCGAGCTCTTGC CACAGCTTATCCAAGGATCTCTTGTAACTCCTTACCCATTAAAACCAGCTCAACCACCATACCCGAGGGGGCATGATGCA AACACCAGATGTGACTATCATGCTGGGTACATCGGCCATTCCACTGAGAATTGCATGTCGTTGAAATATAGAGTGCAGAA GTTGATTGATGCCAAGCTATTGAATTTTTCTGAAAAAACCTAA
Protein sequence (LotjaGi2g1v0149600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQIKEQMSEFMEAIKEAIRRDREEEHQGRSEGPSSTPEFPPGFFPLHVHAQGVHPQGIAMPLTVHPNMPFQQTSQSHPA QFPPYGLPPSYAPPVVVNQTDGNPPTTTQVNPTQSQGPSVSNIEAPQVHIPFPSAPPHAAMPSHLPPLTTYQQDISQAYL PHNSLNILPPHTLNLSAQGNPPTPHAAFPPNHFSEDGQSKERLQLLEERMRAVEGGNYGFNDAADLCLVPDVVIPPKFKA PEFEKYRGTTCPKSHLTMYCRKMAACAHDEKLLIHFFQDSLAGGALNWYMHLERTRIRSWGDLADAFLKQYKYNADMAPD RMQLQNMLKKESETFKEYAQRWRELASQVEPPLSEKEIVSMFIDTLQSPFYDRMVRSVSSNFSDMVIIGERVENDMRTGK ITTSPLTTSNVKKHFVGFAKKKEGDTNAVMAHQGGYSQWKTDQRPTHFYHAPNIPQIPSQYIIAATQSTYPQPHQPITPY TVTQPAPPQPPNFVPPQQNPPQNQNFIPNTNQRNRERNQVRFDPIPMSYTELLPQLIQGSLVTPYPLKPAQPPYPRGHDA NTRCDYHAGYIGHSTENCMSLKYRVQKLIDAKLLNFSEKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 1 | 21 | 21 | - | – | |
| MobiDBLite | 21 | 43 | 23 | - | – | |
| MobiDBLite | 102 | 121 | 20 | - | – | |
| PANTHER | 234 | 368 | 135 | 1.5E-16 | – | |
| Pfam | 276 | 367 | 92 | 8.1E-13 | ||
| Coils | 321 | 341 | 21 | - | – | |
| MobiDBLite | 483 | 502 | 20 | - | – | |
| MobiDBLite | 483 | 515 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0149600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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