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| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Gag-pro-like protein [Theobroma cacao] gi|508716038|gb|EOY07935.1| | 10 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G44670.1 glycosyltransferase family protein (DUF23); Swiss-Prot: sp|Q53RT3|APRV1_HUMAN Retroviral-like aspartic protease 1; TrEMBL-Plants: tr|A0A151RYL7|A0A151RYL7_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0107700_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G20935.1 DUF3148 family protein; Swiss-Prot: sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0111100_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0140100_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G47690.1 microtubule end binding protein EB1A; Swiss-Prot: sp|Q89AP5|DEGPL_BUCBP Probable periplasmic serine endoprotease DegP-like; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0164200 | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G16270.1 sister chromatid cohesion 1 protein 4; Swiss-Prot: sp|Q57926|AKSA_METJA Probable homocitrate synthase AksA; TrEMBL-Plants: tr|A0A151UIC5|A0A151UIC5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0169100_LC | 3 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT5G05260.1 phenylalanine N-monooxygenase-like protein; Swiss-Prot: sp|Q8U4G1|SPEE_PYRFU Polyamine aminopropyltransferase; TrEMBL-Plants: tr|A0A151RZ03|A0A151RZ03_CAJCA Retrovirus-related Pol polyprotein from transposon 297 family; Found in the gene: LotjaGi1g1v0204500_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G69550.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0213700_LC | 4 | ||
| – | Gag-pro-like protein; TAIR: AT5G35460.1 membrane protein; Swiss-Prot: sp|Q8BV57|SRCRL_MOUSE Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D; TrEMBL-Plants: tr|A0A061E6J4|A0A061E6J4_THECC Uncharacterized protein; Found in the gene: LotjaGi1g1v0225100 | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0262500_LC | 3 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G15354.1 SPA1-related 3; Swiss-Prot: sp|P23162|3608L_ASFB7 Protein MGF 360-8L; TrEMBL-Plants: tr|A0A151SNY7|A0A151SNY7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0300300_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G26870.1 non-specific phospholipase C2; Swiss-Prot: sp|Q8XDG1|MUKE_ECO57 Chromosome partition protein MukE; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303500 | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi1g1v0369800_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G44713.1 hypothetical protein; Swiss-Prot: sp|Q9PT98|PY_DICLA Peptide Y; TrEMBL-Plants: tr|A0A151S659|A0A151S659_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0391900_LC | 6 | ||
| – | Ty3-gypsy retrotransposon protein; TAIR: AT5G56390.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q5ZTI6|SGPL_LEGPH Probable sphingosine-1-phosphate lyase; TrEMBL-Plants: tr|A0A151SNY7|A0A151SNY7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0511200_LC | 3 | ||
| – | Pol polyprotein; TAIR: AT5G24750.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q9UR07|TF211_SCHPO Transposon Tf2-11 polyprotein; TrEMBL-Plants: tr|A0A151RYL7|A0A151RYL7_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0537700_LC | 9 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G45170.2 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9EPE9|AT131_MOUSE Manganese-transporting ATPase 13A1; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0548600_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; Swiss-Prot: sp|Q5M0U2|GLMU_STRT1 Bifunctional protein GlmU; TrEMBL-Plants: tr|A0A1B5Z8R4|A0A1B5Z8R4_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0605400_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G14120.1 nuclear pore complex protein; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151RLL6|A0A151RLL6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0710700_LC | 3 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G61380.1 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein; Swiss-Prot: sp|A9BV01|PANC_DELAS Pantothenate synthetase; TrEMBL-Plants: tr|U5CX01|U5CX01_AMBTC Uncharacterized protein; Found in the gene: LotjaGi1g1v0781400_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G50620.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9HLB9|DCUP_THEAC Uroporphyrinogen decarboxylase; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0002300_LC | 6 | ||
| – | Retrovirus-related Pol polyprotein from transposon opus; TAIR: AT3G55150.1 exocyst subunit exo70 family protein H1; Swiss-Prot: sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0006600_LC | 2 | ||
| – | Gag-pol polyprotein; TAIR: AT1G10270.1 glutamine-rich protein 23; Swiss-Prot: sp|B0T7A1|HIS7_CAUSK Imidazoleglycerol-phosphate dehydratase; TrEMBL-Plants: tr|A0A0L9UG54|A0A0L9UG54_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0079600_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G53140.1 Dynamin related protein 5A; Swiss-Prot: sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein; TrEMBL-Plants: tr|A0A151S659|A0A151S659_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0080900_LC | 2 | ||
| – | Gag-pol polyprotein; TAIR: AT1G09820.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q60W52|GPA3_CAEBR Guanine nucleotide-binding protein alpha-3 subunit; TrEMBL-Plants: tr|A0A151UIC5|A0A151UIC5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0084700_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G32000.1 DNA topoisomerase, type IA, core; Swiss-Prot: sp|Q75AV6|RTC1_ASHGO Restriction of telomere capping protein 1; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0087000_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G55540.1 Nuclear pore complex protein; Swiss-Prot: sp|A7KAI1|ATG2_PICAN Autophagy-related protein 2; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0097100_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G23080.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal; TrEMBL-Plants: tr|A0A1B5Z9X4|A0A1B5Z9X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi2g1v0101600_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G05790.1 lon protease 4; Swiss-Prot: sp|Q9M9L7|LONM4_ARATH Lon protease homolog 4, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0102700_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q55FT4|TSUA_DICDI Probable serine/threonine-protein kinase tsuA; TrEMBL-Plants: tr|A0A151UDX0|A0A151UDX0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0121300_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass, expressed; TAIR: AT5G16740.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9F1N3|MRAY_SHEVD Phospho-N-acetylmuramoyl-pentapeptide-transferase; TrEMBL-Plants: tr|A0A151RM48|A0A151RM48_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0121300_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G71280.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|O54963|REST_RAT RE1-silencing transcription factor; TrEMBL-Plants: tr|A0A151S659|A0A151S659_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0132600_LC | 3 | ||
| – | Gag-pro-like protein; TAIR: AT5G53990.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q7LC44|ARC_HUMAN Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A0L9T5V5|A0A0L9T5V5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0149600 | 5 | ||
| – | Transposon protein, putative, unclassified; TAIR: AT4G31570.1 nucleoporin; Swiss-Prot: sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0151900_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G18360.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q0D0W7|SEY1_ASPTN Protein sey1; TrEMBL-Plants: tr|A0A151SNY7|A0A151SNY7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0208600_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q8L748|NU107_ARATH Nuclear pore complex protein NUP107; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0232300_LC | 4 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q9C0G6|DYH6_HUMAN Dynein heavy chain 6, axonemal; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0269800_LC | 3 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G21050.1 hyccin; Swiss-Prot: sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2; TrEMBL-Plants: tr|A0A151UIC5|A0A151UIC5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0269900_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G52490.1 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|A2AJ15|MA1B1_MOUSE Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase; TrEMBL-Plants: tr|A0A151RWR4|A0A151RWR4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0401200_LC | 2 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G72470.1 exocyst subunit exo70 family protein D1; Swiss-Prot: sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2; TrEMBL-Plants: tr|I3S439|I3S439_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0401300_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G75790.1 SKU5 similar 18; Swiss-Prot: sp|Q9BQI9|NRIP2_HUMAN Nuclear receptor-interacting protein 2; TrEMBL-Plants: tr|A0A151TJB2|A0A151TJB2_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi2g1v0401700_LC | 5 | ||
| – | Gag-pol polyprotein; TAIR: AT3G19160.1 ATP/ADP isopentenyltransferase; Swiss-Prot: sp|Q1D2Q7|MURA_MYXXD UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TrEMBL-Plants: tr|A0A151R3H6|A0A151R3H6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0014100_LC | 3 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT3G51990.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q6DAR6|CAPP_PECAS Phosphoenolpyruvate carboxylase; TrEMBL-Plants: tr|A0A151RTH9|A0A151RTH9_CAJCA Uncharacterized protein K02A2.6; Found in the gene: LotjaGi3g1v0097300_LC | 5 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q69Z23|DYH17_MOUSE Dynein heavy chain 17, axonemal; TrEMBL-Plants: tr|A0A151QUZ4|A0A151QUZ4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0219900_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G10300.1 Nucleolar GTP-binding protein; Swiss-Prot: sp|Q4KEZ8|ACCD_PSEF5 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; TrEMBL-Plants: tr|A0A151S659|A0A151S659_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0261500_LC | 2 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT3G49142.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A151TV51|A0A151TV51_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0269700 | 8 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; Swiss-Prot: sp|Q02113|CWBA_BACSU Amidase enhancer; TrEMBL-Plants: tr|A0A151RWR4|A0A151RWR4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0271200_LC | 5 | ||
| – | Gag-pol polyprotein; TAIR: AT1G10385.1 Vps51/Vps67 family (components of vesicular transport) protein; Swiss-Prot: sp|B8GW12|HIS7_CAUCN Imidazoleglycerol-phosphate dehydratase; TrEMBL-Plants: tr|A0A151SNY7|A0A151SNY7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0332700_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G13235.1 ubiquitin family protein; Swiss-Prot: sp|Q9NRU3|CNNM1_HUMAN Metal transporter CNNM1; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi3g1v0450200_LC | 6 | ||
| – | Gag-pro; TAIR: AT3G57910.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6GQ76|CMTR1_XENLA Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; TrEMBL-Plants: tr|A0A061EXR3|A0A061EXR3_THECC Uncharacterized protein; Found in the gene: LotjaGi3g1v0547500 | 11 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G12940.1 nitrate transporter2.5; Swiss-Prot: sp|P49327|FAS_HUMAN Fatty acid synthase; TrEMBL-Plants: tr|A0A151SNY7|A0A151SNY7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0027600_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G07749.1 Mitovirus RNA-dependent RNA polymerase; Swiss-Prot: sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1; TrEMBL-Plants: tr|A0A151RZ03|A0A151RZ03_CAJCA Retrovirus-related Pol polyprotein from transposon 297 family; Found in the gene: LotjaGi4g1v0078000_LC | 2 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G24350.1 neuroblastoma-amplified sequence protein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A151RYL7|A0A151RYL7_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0080100_LC | 10 | ||
| – | Gag-pro-like protein; TAIR: AT5G67160.1 HXXXD-type acyl-transferase family protein; Swiss-Prot: sp|Q63053|ARC_RAT Activity-regulated cytoskeleton-associated protein; TrEMBL-Plants: tr|A0A0L9VSW4|A0A0L9VSW4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0158800_LC | 4 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT2G01750.2 microtubule-associated proteins 70-3; Swiss-Prot: sp|H2LRU7|PKD2_ORYLA Polycystin-2; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0166500_LC | 4 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O14324|YB79_SCHPO Uncharacterized membrane protein C16E9.09c; TrEMBL-Plants: tr|A0A151RJ92|A0A151RJ92_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0186700_LC | 3 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT2G06105.1 aspartyl protease gag-polyprotein; Swiss-Prot: sp|Q02254|NDK1_SPIOL Nucleoside diphosphate kinase 1; TrEMBL-Plants: tr|A0A072VIZ3|A0A072VIZ3_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0187100_LC | 5 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT1G63770.1 Peptidase M1 family protein; Swiss-Prot: sp|Q54ET6|ABPF_DICDI Actin-binding protein F; TrEMBL-Plants: tr|A0A151TV51|A0A151TV51_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0205500_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G24275.1 En/Spm-like transposon; Swiss-Prot: sp|Q53RT3|APRV1_HUMAN Retroviral-like aspartic protease 1; TrEMBL-Plants: tr|A0A151RWR4|A0A151RWR4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0205600_LC | 6 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT1G77870.1 membrane-anchored ubiquitin-fold protein 5 precursor; Swiss-Prot: sp|Q6SVX2|TRS1_HCMVM Protein TRS1; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0214700_LC | 2 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G01420.1 Auxin efflux carrier family protein; Swiss-Prot: sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0228900_LC | 3 | ||
| – | Gag-pol polyprotein; TAIR: AT3G10310.1 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein; Swiss-Prot: sp|O96904|TBC12_DICDI Drainin; TrEMBL-Plants: tr|A0A0L9UG54|A0A0L9UG54_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0055900_LC | 3 | ||
| – | Gag-Pol polyprotein/retrotransposon; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q924C1|XPO5_MOUSE Exportin-5; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0081300_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G60860.1 SEC7-like guanine nucleotide exchange family protein; Swiss-Prot: sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi5g1v0117400_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G71280.1 DEA(D/H)-box RNA helicase family protein; Swiss-Prot: sp|P55190|YBAS_BACSU Uncharacterized protein YbaS; TrEMBL-Plants: tr|A0A151S659|A0A151S659_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0123800_LC | 5 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT2G32470.1 F-box associated ubiquitination effector family protein; Swiss-Prot: sp|O26708|SYP_METTH Proline--tRNA ligase; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0138000_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G09130.1 hypothetical protein; Swiss-Prot: sp|A6RF09|LOC1_AJECN 60S ribosomal subunit assembly/export protein LOC1; TrEMBL-Plants: tr|A0A151U0E6|A0A151U0E6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0004600_LC | 5 | ||
| – | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT5G39775.1 Gag-Pol polyprotein/retrotransposon; Swiss-Prot: sp|Q4L5M8|BSHC_STAHJ Putative cysteine ligase BshC; TrEMBL-Plants: tr|A0A151QNU4|A0A151QNU4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0098700_LC | 3 | ||
| – | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT4G20210.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein; Swiss-Prot: sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor ATF-7; TrEMBL-Plants: tr|A0A151R3H6|A0A151R3H6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0146400_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT3G09130.1 hypothetical protein; TrEMBL-Plants: tr|A0A1B5Z8R4|A0A1B5Z8R4_TRISU Uncharacterized protein; Found in the gene: LotjaGi6g1v0147500_LC | 5 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT3G53930.1 Protein kinase superfamily protein; Swiss-Prot: sp|P04323|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr|A0A072TF32|A0A072TF32_MEDTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0151200_LC | 4 | ||
| – | Gag-pol polyprotein; TAIR: AT3G21670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q60W52|GPA3_CAEBR Guanine nucleotide-binding protein alpha-3 subunit; TrEMBL-Plants: tr|A0A151SNY7|A0A151SNY7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0151900_LC | 3 | ||
| – | Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT5G16740.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q8RD38|MURI1_CALS4 Glutamate racemase 1; TrEMBL-Plants: tr|A0A151RMF1|A0A151RMF1_CAJCA Retrovirus-related Pol polyprotein from transposon 17.6; Found in the gene: LotjaGi6g1v0194000_LC | 3 | ||
| – | Retrotransposon protein, putative, unclassified; TAIR: AT1G68920.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9WU22|PTN4_MOUSE Tyrosine-protein phosphatase non-receptor type 4; TrEMBL-Plants: tr|Q69F85|Q69F85_PHAVU Gag-pol polyprotein; Found in the gene: LotjaGi6g1v0291800_LC | 5 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 1.35 |