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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0151200 |
| Transcript ID | LotjaGi2g1v0151200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxymethylglutaryl-CoA synthase; TAIR: AT4G11820.2 hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase; Swiss-Prot: sp|P54873|HMCS_ARATH Hydroxymethylglutaryl-CoA synthase; TrEMBL-Plants: tr|G7KQF5|G7KQF5_MEDTR 3-hydroxy-3-methylglutaryl coenzyme A synthase; Found in the gene: LotjaGi2g1v0151200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:54518628..54525391) extracted from Lotus japonicus Gifu genome v1.2.
CTGCAATGCTAAACAAAATCATGAGCTAAATGTATGATACTTTCCTTTGACTTTTGTGTCGTGCCTTTGATCTTTTCTCA CCGTGCATTAAAGGATGCTCTTAATTAGTTGATACATGTGTCGTAGGTTGTTGGTGGTAAAACATTCGTCACAATTAAGA AGCAAACAACTGAATTCAAGTGTGTATGGTGTAGTAATAATATCATCATTCTTTTGTTTCACCCACAAATGACCACAATC CACACCATTCATTCATAATTGCCAACAGAAAATTCAACAACTCCTTCCGTTCAAACATCCATCATAGTTTCCGCCGAAAA AGGGGTTAGCTAGCTGGTTCCCAAATCTACCACTCAGTCACATGCAGCCAACAATGTGGTAGATTCATGTCAAATGAAAA ATGTACTATCAGATTGGAATTTGGAGGAGATATAATGCCAGCATCTTCTCCTAATTGAAAAACAAGCAACAACTTCACTT CCATCACTGAGAATTAAGACTTTCTCACTCACCATGGCCTCTTCTTCACACCCCAACAATGTGGGAATCCTTGCCATTGA CATCTACTTCCCACCCACCTGCGTGCAGCAGGTAAAGTTGTGATTTTGTATTTTTATTTGATTTTAAAGCTGCATTTTTT TTTTTTTTGATTCTTGTGTTTTTCCTTTGTTGGGTTTGTGTGATTCTGCAGGGGGCTTTGGAGGAACATGATGGCGTGAG CAAAGGGAAATACACTATTGGGCTTGGTCAAGATTGCATGGCATTCTGCACTGATGTTGAAGATGTTATCTCAATGAGGT CACTTGCAATTTTGAATAAACTTTTTACAGTTACCAATGTTTTTTTAGTTATTAATTTGATTAGAGCGTTAATGGGGTGT GGAGAAACAAATAAAAAGTGGTTAATATGGTAGTTCTAGTAATTTTGTTTTGGGGTGCTAAATTCATTCTTTTGAAGTTA GTCAAAAAAGCTAGCCAGAGTTCTGGACTTGTATGATGCTGCTTGCTGCAATGGGTTTATTGTACTTAGAGACCGTCTGG ATACAGACTTATTGGAGCTTATCTACTAGAAAAACACTAAATAAGCTTCAATAAGTCCTATTTGATTTGCATCCAAACCT ATTCTGCTCATTTTTTTAATTTTTATTTTCTAATTTTGAATTTCCAGTTTGACGGTTGTTACTTCACTTCTTGAAAAGTA TAATGTTGATTCAAAGCAAATTGGACGCTTGGAGGTTGGAAGTGAAACTGTCATTGATAAAAGCAAATCCATTAAGACCT TCCTTATGCAAGTTTTTGAGGTATCTCATTCCTGTTTTTGTGTTGACCCTAACTCTATAACATTATTAGGTTCTAGAGCT TTATGCTTGCGTTACCGTTGGTATCAGTGTCTGAAACTACTGTCTTTAACTGGAATTGCATTTGCAATATTGTGGTTTGT GAGGTCTCCTGTTTCCACTTTCCACAACTGCATTAGTGGTTGCATTTGCCGCAATTTCAGTTACTACCCTGCAATTAGGA TGCAACGGCAATTTAAAACCATAGTAGGAGTTGCATACTCTCTTTACCTGAGATAACCCCGAATGGATTTAATCTTATCT TTTGTGTCACACATATTTGAGGTAGCAAAGCAGAAAAGATGTTTTCTGATGTACGATTTTGAAAATGATGTCTAATTTAT TGTTTTCAGAACTCATAGAATCAAATTTTGAAAGGTACTACAAGAATGAAATTGATGTGTTTATGTGACACCCACATCTT ATGTTAACTAATGTAAAGTTTTAACATTCAGGAGAGTGGTAATGCTGACATTGAAGGTGTTGATTCAACAAACGCATGCT ATGGTGGAACAGCAGCTTTGTTCAATTGCGTGAATTGGGTTGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTTGTA TGTACAGACAGTGCGGTATAGACTCCTAGCAAACGATAACCTTTTCTTTGCATCCTTTCATATTTCTGAAGATTTTAAGA TTTACTAGTTCATGCATGAGGAGAAAGATTGTTAACTCGTATTATCCATTTTTATGACATAATTTATGCATGTTTTAGAA CCTCGGACCAACTCTAGCATCTAAGGTACTTATGTTGACATACAAATTCAAGCACCTCTCACTACTTTCTTGAGGAATTT TACCATATTTCAACAGATTTCACATTATTCTAACTCGAGTTATATGTGGCAGCAGTCACACGTGTTATCTTGAAATAAAC TCCTACCTCCAAATGCATGTGGACAAACTTACAATTTGATAAATTTCTAGTTAAAGGAATCTGGAAAAACTTGAAATTTC TTAAATTCCTAATTAAAGAGAATGTCGAAGAACTTATAATTCAACAATTCCTAGCAAAAACATATTAGAATTTGCAGTCC TGAGTCCTGACATTGCATAGTTTCACCATCTTATGTTGTTAATGAAACATCAAAGTAAAAACTGCAGAATCTATACTGAG CTGTATAAGGTTAACTTTCCAAGACATCAATTTTACATAGGAGCATGTAACAAATGTTTTATTTTGCATGTCTAAATGAT GGATCCAAATGCAGATGGTTTATACACAAACAATTTTCTCAACTCTGACTTTATTCTTCAAGGTATATGCTGAGGGACCT GCTCGTCCAACTGGAGGAGCCGCTGCAATTGCCATGCTCATAGGGCCAGATGCTCCTATTGTATTTGAAAGCAAACTCAG GGGCAGTCACATGTCTCATGTCTATGATTTTTACAAGCCAAATCTTGCAAGTGAATACCCAGTAATGCTTAGCCACCTCC ACTCTATTGATTTACTTCCATCATAAATTCAATATAAAGTATTATTTTAGATTTTTAGGTTTTTATAGAAATACTTTTGT TATTAAATGAACAGCAGTGTAACAGCATGTTTAGAAAATCAGTTGATGGCGACATTCATATAGAATTGAATTCAGTTTTA AGAAGCTAATTTGTGTAGCTTTCAGGAAATAGAATCAATGCCGAGTTTGGAAAATGAGATTCATGCATGCACTATGACCA ATTTCATTTATTATCCATGGTGGAGATATTTTCCAATTTTCAGCATCACCATTCTTTTTTCTTTATATTGTTGTGTTCTA ATTTTAGTTGAATTTTGTTATAAACACAAACAAGGTGAAAAAAGGATGTATAGGAAGACTCTTTTTGAAAAAAATAGCTT CATGAACAAAAGCAATAATGTCTTTAGCTAGTCTCATTTCAGTGGGCGGAGCCATGTATTGTCACTAGCACACTCTTTCT ACGGGTTAGCAGGGTCCTTTCCCACCCCTTCCCCAACACTGAATGGATCAAATTAATTCATGTATGCAACCATAGGTCCA GAGACGGAACCAGAAAAAATGGGTAGGGAGTGAAATTTAACACATTCAGCAAAATTATGAAAAATTTACGGGGAGCAAAA ACAATATTTGAATAATATTTTGTTAAGAAAGTTTTTCCTCTTTGGAAAGGGGGGGACCGCCACATTTTGCCATTATCGTC CGTCCCTGCATAGTTCTTTACGAAATAGCTAAATCTAATTGTTACCTATTTTTAGTGCTATTTCTACCTTAATTAGCTTT TAAGATTTTCTCCTAAACTGAATTATGTTAAAGTAAATTATCTCAGTTTATGCACATTAACTTCCATAGAAAATTTTAAA TGTGTTAAGATTTTAATATCTTGTTTACAGCAATCATTACTGCTATGCCAAAGTGTTGGTCTGTGCCTTTTTTCATCTTT TCTTTGTCCTTTTCCTGCTCTAGGTTGTTGATGGAATGCTCTCACAGACCTGTTATCTCATGGCACTTGATTCCTGCTAT CGGCTTTTATGTGAGAAGTAAGCAAAGACCGAACCGTAAAAGTCATTTCGATTTTTTCTTTATGGTTTCAAATTCTCATT CTATTTTCTTCCATGTACAGATTTGAAAAATTGGAGGGGAGGCCGTTTTCAATATCAGATTCTGATTATTTTGTTTTTCA TTCTCCATATAACAAGGTACTTTAAGCTTTATGGTTTAGTCATGTAGGATTTATTTCTCCATATTTGGAATGAAAACAAA AAAAAAGCACTGAGTATGTCATTACACGGCCTAAAAAATGTCTCTCTACTGCTTTCTTGTATGTATGACAGCTTGTGCAG AAAAGTTTTGGTCGGTTATACTTCAACGACTTCCAGAGAAATCCCAGGTTTGTGGATCCTCTGCTTTATACATTTCCCAT ATTCAATGCATTTTCAATTCAAGGTCCAAGCAATAAAATGACATCTACCCTTTTCACTAGGTAATTTAGTTTACCTTTTG GATATTTCTTGCTGTAATAAGCCAATAGGTAGTGAGCTCTTAAGGTTCAGTTAAATATTCTAGTGTAACATTTCCGCCCG CAATAATATATTACATCATATTCTGGATTGTATTTTCGACAAACAGATCTAAGAAAACTGGACTGCATGAACTGAACCAT AAAAATTCCATGATTTTAATTGATGTCTTTAAATCCTAGTTGATAATTTTTTTGTTGGTTCTCTGCATTTGCTATGCTGT ACCAGTTTTGTTGATGAAGTTTCCAGGAATGCCCTAGCGCCTTTTGCATCCTTATCTGGTGATGAGAGCTATCGCAGTCG TGATCTTGAAAAGGTAGCTGATCCTGTTGTGATTGAATCATGTTGCTTGACTAAAATATTACTAGAGATTTAACTCTTAG AATGGTTTGCGGTCATTGTGACTCTACAGGCAAATCAGCAAGCTGCAAAGCATGTTTATGACGCGAAGGTGCAGCCTGGC ACACTAATCCCAAAGCAAGTTGGCAACATGTACACTGCATCACTTTATTCAGCATTTGCATCTCTCCTTCACAATAAGCA TGACTCGCTGGTATGGTTTTTCATGCTTGTATCATATTCTTTGTTTATTTTACCCTTTGTATCTCTGTGACTGCATCTTT CATGTGGACAATAATTCTAAAATTCTCATAAGCATTGTCTTCAATGTACAGGTAGGTAAACGTGTAGTTATGTTCTCTTA TGGGAGTGGTTTAACCGCTACAATGTTCTCCTTCCGCCTTCAAGAAGGCCAGCAACCCTTTAATTTGTCAAACATTGTAA AGTTGATGAATGTTTCTGACAAATTGAAGCAGAGAATTGAGGTATGCCATCTTTAACCACTTCTAGCTCTTGATGATAGT TTTATTCTGGTCATACCATCTAAGATAATAGGCATAAAGGGTGAATCTTACAAGAACCTTCTGTAGTTATGGTGCATGGA TGCACCTTTTATCTTAACTGTGTTTGTTAGTAAGTGTGATTTAATCAATGGCTGTCATTCTATCAAGTGTGACCTCTGTT AAAGGTTCCACATTGACTAGAGATATGACTAAATAAGTTATTATAAATGTGTTAACGGTGTCGTCACCCATTGACTAGCT TTTGGTGTAGAGTTAGGCTCAATCCAAAGTCTACCTTAGATTGATTGGTATGGTATAAAAGGGAATACTTACTCATATTA CCCAAAAGTAATGGAAATTAGAATTGCCAATTTTGGTAGAAAAACCTCATACCTGGAATTTATCTTTCTCTGCCAATACT TGGCCTTTAGTCCACTGATGATTGGCTTCCTTCTTGTGTTAACAATGCCATGCAAGAATCTCCTTCGTGACGTTGATGAG TAATTGCTTGCACATCAACAATTAGCTAGATATTATGTTACTGTTGAATTTGTTTCCAGTTCCAGCAAGAAATGCAATCA CATCAAGATTAATACTTAACAATGATCAAGCTCAAAATCCATAACAGAACAACAGTCCATCAGAAACCAAAGATGAAACT CAAAATAAACATCAGCATAGAAACAAAATAAACTTTGCATAACTACAATATCAAACCATGCCAAAACTGAAATGGTACAG CAAGAGTCAGAGAGGAGAATAAGAAAGAAACTGATGATAGTGAAAGTGCATAGTTAAAATGAGGGTGATATGGGGGTAGA CGTTGGCGTCGATTGGTTTGAGGGGTTTCTGGTTTTGGTGTTCTACATGTTAGCAAATGCTTTATGTTTTGTGGCCTGTC AGTATAGTGTTCTGTACTAGCTGATATCTGAATTATAGTTTTCAAAAGGCCATGTAACATTGAGATTTGATGTTTTGAAA ACCAACTATACATTCCATTTTTTCAGGGTACATGAATCAACCACATGAGGTTTGTTTAAACTTTTTTAAAAAATAGTGTT ACATGGTGCGTCCATGCTCCCTAATAGTGTATAATTCTCCAGAACCTAAAGAATTTATTACAGAATTATGGAGCATCGTT ACTCCTGAAACGAGTTTACTATGTTTGCAGGTTACTCCTGAAAAGTTTGTTGAAACTTTGAAAATCATGGAGCAGCGTTA TGGGGCAAAGGACTTTGTGACTAGCATGGACTGTAGCTACCTACATCCAGGCACATTCTATCTCACCAAAGTTGATTCCA TGTATAGAAGATTTTATTCCAAGAAGGACACCATGAGCAGATGATAATTCACTATCAGATGATCATTGATATCTTCGAAT TTACAGCTTTTGTCCTGGTGCACGTTCTGTATTTGATCCCTTTTATTTACCTAATTTGTTTATAAGATATTTATTTTCTT ATATTATTGTGATAAGGTTTTATCCAAAATTAGTTTGTACACCAACTGTTAATTATTTTGTTATGAAAAATAATGCAAAT ACTTTAGTGCAATTTTCAATTGGATTATCATATTTACAATGCCC
CDS sequence (LotjaGi2g1v0151200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTTCTTCACACCCCAACAATGTGGGAATCCTTGCCATTGACATCTACTTCCCACCCACCTGCGTGCAGCAGGG GGCTTTGGAGGAACATGATGGCGTGAGCAAAGGGAAATACACTATTGGGCTTGGTCAAGATTGCATGGCATTCTGCACTG ATGTTGAAGATGTTATCTCAATGAGTTTGACGGTTGTTACTTCACTTCTTGAAAAGTATAATGTTGATTCAAAGCAAATT GGACGCTTGGAGGTTGGAAGTGAAACTGTCATTGATAAAAGCAAATCCATTAAGACCTTCCTTATGCAAGTTTTTGAGGA GAGTGGTAATGCTGACATTGAAGGTGTTGATTCAACAAACGCATGCTATGGTGGAACAGCAGCTTTGTTCAATTGCGTGA ATTGGGTTGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTTGTATGTACAGACAGTGCGGTATATGCTGAGGGACCT GCTCGTCCAACTGGAGGAGCCGCTGCAATTGCCATGCTCATAGGGCCAGATGCTCCTATTGTATTTGAAAGCAAACTCAG GGGCAGTCACATGTCTCATGTCTATGATTTTTACAAGCCAAATCTTGCAAGTGAATACCCAGTTGTTGATGGAATGCTCT CACAGACCTGTTATCTCATGGCACTTGATTCCTGCTATCGGCTTTTATGTGAGAAATTTGAAAAATTGGAGGGGAGGCCG TTTTCAATATCAGATTCTGATTATTTTGTTTTTCATTCTCCATATAACAAGCTTGTGCAGAAAAGTTTTGGTCGGTTATA CTTCAACGACTTCCAGAGAAATCCCAGTTTTGTTGATGAAGTTTCCAGGAATGCCCTAGCGCCTTTTGCATCCTTATCTG GTGATGAGAGCTATCGCAGTCGTGATCTTGAAAAGGCAAATCAGCAAGCTGCAAAGCATGTTTATGACGCGAAGGTGCAG CCTGGCACACTAATCCCAAAGCAAGTTGGCAACATGTACACTGCATCACTTTATTCAGCATTTGCATCTCTCCTTCACAA TAAGCATGACTCGCTGGTAGGTAAACGTGTAGTTATGTTCTCTTATGGGAGTGGTTTAACCGCTACAATGTTCTCCTTCC GCCTTCAAGAAGGCCAGCAACCCTTTAATTTGTCAAACATTGTAAAGTTGATGAATGTTTCTGACAAATTGAAGCAGAGA ATTGAGGTTACTCCTGAAAAGTTTGTTGAAACTTTGAAAATCATGGAGCAGCGTTATGGGGCAAAGGACTTTGTGACTAG CATGGACTGTAGCTACCTACATCCAGGCACATTCTATCTCACCAAAGTTGATTCCATGTATAGAAGATTTTATTCCAAGA AGGACACCATGAGCAGATGA
Protein sequence (LotjaGi2g1v0151200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSHPNNVGILAIDIYFPPTCVQQGALEEHDGVSKGKYTIGLGQDCMAFCTDVEDVISMSLTVVTSLLEKYNVDSKQI GRLEVGSETVIDKSKSIKTFLMQVFEESGNADIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGP ARPTGGAAAIAMLIGPDAPIVFESKLRGSHMSHVYDFYKPNLASEYPVVDGMLSQTCYLMALDSCYRLLCEKFEKLEGRP FSISDSDYFVFHSPYNKLVQKSFGRLYFNDFQRNPSFVDEVSRNALAPFASLSGDESYRSRDLEKANQQAAKHVYDAKVQ PGTLIPKQVGNMYTASLYSAFASLLHNKHDSLVGKRVVMFSYGSGLTATMFSFRLQEGQQPFNLSNIVKLMNVSDKLKQR IEVTPEKFVETLKIMEQRYGAKDFVTSMDCSYLHPGTFYLTKVDSMYRRFYSKKDTMSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 455 | 453 | 4.2E-185 | ||
| Pfam | 7 | 179 | 173 | 2.6E-85 | ||
| TIGRFAM | 7 | 454 | 448 | 2.9E-216 | ||
| PANTHER | 9 | 455 | 447 | 0.0 | – | |
| PANTHER | 9 | 455 | 447 | 0.0 | – | |
| CDD | 9 | 373 | 365 | 1.19099E-85 | – | |
| SUPERFAMILY | 9 | 177 | 169 | 4.53E-33 | ||
| ProSitePatterns | 110 | 125 | 16 | - | ||
| Pfam | 180 | 454 | 275 | 6.3E-109 | ||
| SUPERFAMILY | 180 | 452 | 273 | 8.79E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Hydroxymethylglutaryl-CoA synthase activity | Catalysis of the reaction: acetoacetyl-CoA + acetyl-CoA + H(2)O = (S)-3-hydroxy-3-methylglutaryl-CoA + CoA + H(+). | ||
| Biological process | Isoprenoid biosynthetic process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. |
Expression pattern of LotjaGi2g1v0151200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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