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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0158500 |
| Transcript ID | LotjaGi2g1v0158500.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein; TAIR: AT1G08360.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|B8B9K6|R10A_ORYSI 60S ribosomal protein L10a; TrEMBL-Plants: tr|I3T625|I3T625_LOTJA Ribosomal protein; Found in the gene: LotjaGi2g1v0158500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55846894..55848262) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTATTCAATTCTCTTCACATTCTTCTAATTTGTTCATGCGTTTTTGCTACCAATTTCCACCGTTTTCATTCATAT GTGAGGTTTTTCTTCTGATCTGTATCTGATTACCCAATGTGCAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTC TGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATTTGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATG ATCCCCAGAAAGACAAGCGTTTCAGTGGCTCTGTCAAGTTGCCTCATATCCCTCGACCCAAGATGAAGATTTGCATGCTT GGTGATGCTCAACACGTCGAAGAGGTATTACAACTACTATAACATGATATAGTGCTTTATAGACCATTTATTTTTGTTCT TGTGTGCCATTTGAATTACTGGTTGGTTATTAGTAATGACTTAAGTAACTTGAAATGACACAATGTTTCTGTAATTTTCT AACCGTAATTAATTCGAGGGAGCAATGTCATTCATGTAGATTTGATGATACTGGTGTTTTTATCGATTTTTGGTTTAGAT TATTTCAATTATTGGCAACTCTGTTGTGTTAATGATGTCTTTTCGCTGCTCTTCAGGCGGAGAAGATTGGATTGGACTGG ATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCATGCATTTTT AGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCCCCCCCACCC CAGATGTTGCTCTAGGGTTTTTTAAGTTTTTGGAGTTTGAGTGTACTTGGTGATCTTTTGTTATCATCATTTCTTATTAT ATTTGGCTACTTTTGTTTTGTATTTCTTTTGTTTTACTAGCTGCTTAAGAATCTTCTAAACTGCTTCATATATTCTCTGG TTCAAGCTTTATCCCCCACCCACCCCTATCATGTGATTAATTGATTTGGTTTATAAAAGAAGAAGCAAGAATTGCTATAT TAAGCATGTGATTCTTTCAAGTTTTCAAATATTGCTTTAGTTGATTTTGATATTTGTCTGACTATGCAGGCAAGTTCCCT ACACTTGTCACTCACCAAGAATCCCTTGAAGCAAAGGTTAACGAGACCAAGGCTATGGTCAAATTTCAGCTAAAAAAGGT GCTCTGCATGGGAGTCGCCGTGGGTAATGTTAGCATGGAGGAAAAACAGATCTTTCAAAACGTGCAACTGAGTGTTAACT TCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTAAGTACACTCTTAATATTTGAGTTAAACCATTGCTTTCTGTTT TCAATTTAG
CDS sequence (LotjaGi2g1v0158500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAAGCTTCAGAATGATGCTGTCAGAGAAGCTATCTCTGGAATCATGACTGATTCCAAGGAGAAGAATCGCAAATT TGTGGAGACCATTGAACTCCAGATTGGTCTCAAGAACTATGATCCCCAGAAAGACAAGCGTTTCAGTGGCTCTGTCAAGT TGCCTCATATCCCTCGACCCAAGATGAAGATTTGCATGCTTGGTGATGCTCAACACGTCGAAGAGGCGGAGAAGATTGGA TTGGACTGGATGGATGTCGAAGCATTGAAGAAGCTGAACAAAAATAAGAAGTTGGTGAAGAAGCTAGCTAAGAAATACCA TGCATTTTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTCC CTACACTTGTCACTCACCAAGAATCCCTTGAAGCAAAGGTTAACGAGACCAAGGCTATGGTCAAATTTCAGCTAAAAAAG GTGCTCTGCATGGGAGTCGCCGTGGGTAATGTTAGCATGGAGGAAAAACAGATCTTTCAAAACGTGCAACTGAGTGTTAA CTTCCTTGTCTCTTTGTTGAAAAAGAACTGGCAAAATGTAAGTACACTCTTAATATTTGAGTTAAACCATTGCTTTCTGT TTTCAATTTAG
Protein sequence (LotjaGi2g1v0158500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLQNDAVREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIG LDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKK VLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLIFELNHCFLFSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 207 | 207 | 6.3E-43 | ||
| PANTHER | 3 | 203 | 201 | 6.1E-128 | – | |
| PANTHER | 3 | 203 | 201 | 6.1E-128 | – | |
| SUPERFAMILY | 3 | 205 | 203 | 2.09E-59 | ||
| CDD | 9 | 205 | 197 | 1.09841E-53 | ||
| Gene3D | 22 | 205 | 184 | 1.0E-65 | – | |
| Pfam | 22 | 205 | 184 | 5.1E-39 | ||
| Gene3D | 62 | 151 | 90 | 1.0E-65 | ||
| ProSitePatterns | 116 | 135 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi2g1v0158500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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