Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0158600 |
| Transcript ID | LotjaGi2g1v0158600.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S11; TAIR: AT1G31817.1 Ribosomal L18p/L5e family protein; Swiss-Prot: sp|Q8VZT8|RT11_ARATH Probable ribosomal protein S11, mitochondrial; TrEMBL-Plants: tr|I3SBQ1|I3SBQ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0158600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55959269..55961910) extracted from Lotus japonicus Gifu genome v1.2.
GGGAACACTAACCTGGTGCAAAATCTCATAACAAAATAAAGAACTCATAAACACTGAACGCAAACCGGTTTACCATGAAA TGAAATGAGAAAAGAAACAAACTCAGATTTCGACTCCGTGCTGATCAATCTCAAACCCTAACTCTCAACAACGATGAATC GTTTCATCTCTTTCATTTTCTGTGGCCGTGGATCCTCCCTGATCTCACCCAAACCCTCGCTTGCATGTCGTCCCTTCTCG CCGGTGCTCCAAAACGATGGTAACCTTCGAATCTCTCTCAAGTAAATTTACAATTTAGGCATTGATTTTGTGTTGCTTTA GTTCCTGCAAGTTTTCATGTGCACAAAAATAGGGTCCTGAAATTTGTCAATTTGTTAACAAGTTCATTCCTTCAGGATTG AAGTTGCAGAAATGAAATTTTTTTAGGGGCTCATATTGTATATTTACCATATAACATTTACTGATGGCCTCTTGATGGTA ATGGTAGTGATAAATGGCATCATCACCTATTTTTTAGTAGTGGCGAAAGAAGTAAACTTCACGTTCTTCGCATTCCCCTT TTTTGAGTATATGATACTGGATTCTGAGATTTTCCTGTTAAATGCTGAATGTGTTACTGAACTTAGATTTGATAATCTTC ATGCTGGGTTCTGTGAAATCTCATTAATCTTCTCTGGGTAAAGTTGATTGAAGTTCGAGGGAAATTCTTTCTGCATATAT AGATAAGGAATGATATGTGTTGCAAAACAAATGGAATATTGAAATGATTCTTAGTGATGATTTGATTCAGATGGATCAAT ACACATACATACACACAGTTTTCCATTCTGTGAAGAAACTAAATTTGACATCTATGGCTGTATTTGCAAAACCCTTTTTC CAATCTTATGATAGGCTTTGGAGGAGATAATCGAGCTATTAGCATTGATGGTGATGATCTTGAATTCTACATGTATGATT TCAGAAAGTTTACCTTGTTGATGACTTACATTGATTTTTGTAAGCCTGCATTTCAATGATTTGTAATATTTATTTGGGTG TTAAATTAATTACTGATTTCATTTCTGATTTGTAGAGTGATTAATGCAGTAGTAGTGGGTTGCTTGTTTTGTGTATTTGG TATTCCTGAATTGTATGTGTTTTGTCCTAAACTTATTTGAGATAGATTGATGTTACTGTTAGCTACAATCTACATATATG TTATCATCAAACTAGAATCCTAAATGGTTGAAATCAAGAAAACAGAAAAGTAGTGGCAGCAGTAGTATTGGGTACCTTGA ATCAAAATCTGAATTTTGATATTAAAGTTTTAGTTTTTTCCCCGGATCATCTCAACAATCTTATGAGGGTTCTTATTCAA TCTTTTGAAATTGCAGGACATGTTAGGGGATTTTCAAGCGCAAATTGGGGTTTCAATGGGAGGAATCCTGGTGAGAATGT GAATGCAAATGCAAGGGCCGATCCAGATTTTATCCGGGATAGTGAGAATAGAAACTTCAGAAGTGAGAATAATGTTCCAG GTTTTATGCGGGATAGGGAGAATATAAACTCCAGAAGTGAAAATATCGTTCCAGGTTTTATGCGGGATAGAGAGAATATA AACTCCAGAAGTGAGAATAATGTTCCAGGTTTTATGCGGGATAGGGAGAATATAAACTCCAGAAGTGAAAATATCGTTCC AGGTTTTATGCGGGATAGAGAGAATATAAACTCCAGAAGTGAGAATAATGTTCCAGGTTTTATGCAGGATAGAGGGAATA TGAACCCCAGAAGTGAGAATAATGCCGGGGGTGACAGGAATTTTAGGCATATGGACTTTGTAAGAGGAATTATAGATGAA GATGGCAGGGATCGGGGTCATCTATCCTCTCCATATCATTATGAGCAGGATGCTGATTTTGTTCATATAAAGATGTTGCG TAACAATACCTTTGTGACTGTAACTGATTCTAAGGGAAATATAAAGCTCAGTGGCTCTGCTGGCTCCTTGAAAGATATGA AATCAGGGCAAAAGCTTTCTAGGTATGCTGCTGAAGCAACTGCAGAAGTTGTTGGCCGAAGGGCAAGGGGCTTGGGGTTG AAATCTGTTGTCATGAAAGTGAATGGGTATACTCACTTTAGGAGAAAAAGACAAGCAATACTGAGTTGGAGAGAGGGATT TACCGATTCTAAAGCGGATAAAAATCCGATTGTGTTCGTTGAAGATACCACCCGACGCGCCCATAATGGCTGCAGGCTCC CAAAGAAACGACGTATTTAGTTATTGTTGCTGGGATGGTTGAAAAAACTCTAGTTGACTTGGATGTAGACAGTTTAGGTG CAGTTTTGGCACATGCAGATTTTCTTGTTAAAGCACCTTTCATGAATATTTCAATTCCTGTTTGTAGATTGTCTGTTTGC CTGTCCTTTTGTTACATTTTGTACAACTAGGAAGGTTGAATAACATGAAGTTTTTTGTAGTAATACTTACTGAAGAGCTA TTCTTAGTTGAATGACATGAGGCTCATCAGTTGATCTGGTGTAACTGCCTCGAGCTGTTTCTTTTTTATATGTTGCTGTT ACATTTTGGTGTATTACAATTATTGTGTTTCTCGTTGCACCCATCTTTTTCTCAAGTATTAGTAAATTAAAAGAGAATAA AC
CDS sequence (LotjaGi2g1v0158600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGTTTCATCTCTTTCATTTTCTGTGGCCGTGGATCCTCCCTGATCTCACCCAAACCCTCGCTTGCATGTCGTCC CTTCTCGCCGGTGCTCCAAAACGATGGACATGTTAGGGGATTTTCAAGCGCAAATTGGGGTTTCAATGGGAGGAATCCTG GTGAGAATGTGAATGCAAATGCAAGGGCCGATCCAGATTTTATCCGGGATAGTGAGAATAGAAACTTCAGAAGTGAGAAT AATGTTCCAGGTTTTATGCGGGATAGGGAGAATATAAACTCCAGAAGTGAAAATATCGTTCCAGGTTTTATGCGGGATAG AGAGAATATAAACTCCAGAAGTGAGAATAATGTTCCAGGTTTTATGCAGGATAGAGGGAATATGAACCCCAGAAGTGAGA ATAATGCCGGGGGTGACAGGAATTTTAGGCATATGGACTTTGTAAGAGGAATTATAGATGAAGATGGCAGGGATCGGGGT CATCTATCCTCTCCATATCATTATGAGCAGGATGCTGATTTTGTTCATATAAAGATGTTGCGTAACAATACCTTTGTGAC TGTAACTGATTCTAAGGGAAATATAAAGCTCAGTGGCTCTGCTGGCTCCTTGAAAGATATGAAATCAGGGCAAAAGCTTT CTAGGTATGCTGCTGAAGCAACTGCAGAAGTTGTTGGCCGAAGGGCAAGGGGCTTGGGGTTGAAATCTGTTGTCATGAAA GTGAATGGGTATACTCACTTTAGGAGAAAAAGACAAGCAATACTGAGTTGGAGAGAGGGATTTACCGATTCTAAAGCGGA TAAAAATCCGATTGTGTTCGTTGAAGATACCACCCGACGCGCCCATAATGGCTGCAGGCTCCCAAAGAAACGACGTATTT AG
Protein sequence (LotjaGi2g1v0158600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRFISFIFCGRGSSLISPKPSLACRPFSPVLQNDGHVRGFSSANWGFNGRNPGENVNANARADPDFIRDSENRNFRSEN NVPGFMRDRENINSRSENIVPGFMRDRENINSRSENNVPGFMQDRGNMNPRSENNAGGDRNFRHMDFVRGIIDEDGRDRG HLSSPYHYEQDADFVHIKMLRNNTFVTVTDSKGNIKLSGSAGSLKDMKSGQKLSRYAAEATAEVVGRRARGLGLKSVVMK VNGYTHFRRKRQAILSWREGFTDSKADKNPIVFVEDTTRRAHNGCRLPKKRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| Phobius | 20 | 293 | 274 | - | – | |
| PANTHER | 89 | 293 | 205 | 4.5E-80 | ||
| PANTHER | 89 | 293 | 205 | 4.5E-80 | – | |
| MobiDBLite | 110 | 140 | 31 | - | – | |
| MobiDBLite | 113 | 136 | 24 | - | – | |
| Hamap | 131 | 293 | 163 | 16.09 | ||
| Gene3D | 164 | 293 | 130 | 1.4E-32 | ||
| SUPERFAMILY | 172 | 293 | 122 | 2.4E-28 | – | |
| Pfam | 175 | 292 | 118 | 1.3E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi2g1v0158600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…