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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0158700 |
| Transcript ID | LotjaGi2g1v0158700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CDGSH iron-sulfur domain-containing protein 2; TAIR: AT5G51720.1 2 iron, 2 sulfur cluster binding protein; Swiss-Prot: sp|Q9FLI7|NEET_ARATH CDGSH iron-sulfur domain-containing protein NEET; TrEMBL-Plants: tr|I3T106|I3T106_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0158700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55962482..55966103) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAACTCAGACGTGGTGAAAGCCAAAATGTATCTCTCAATGAACAAGGTAGGTTCCCAACAATCTGACTTTGGAATTC AAACAATCAATTTTGGTAGCCTAATTATTCAATATTTTTCCACCAGAAAAAAAGAAGTAAAGTGGAGCAATAATGACGTG TGAATTTGTCTCCATACAAAGTGGAGTGTGGTAGCCACAAGTTGAGGAACACACTCTCAATATAATCCTCCTGTGTTATC ATTTCTCATCCACCCGGTTCTCTCGATCTTGGTCACTGTAGAACAACATACACACACAGAGACAAAGAAACCTTATTTCA ATGGAATCTGTTCTGAGCCACGTTGGTGCAGGTTTCTGCCATGGCATAACCCCATTGAAAAGGGGAATTACAGCTACCCA TTTCAACCCTAGTTCCTTCAGTGGTGGTGTTGATTGCAGGAAACCAAGGCGTGTGGTGCTGGTGAAAGCAGAAGCAGAGG GTGTTGGCATAAACCCAGATATCAGGAAGACTGAAGCGAAAGTGGTTGACTCTGTTGTGATCACTGAACTTGCCAAGCCC CTCACTGCTTATTGCAGGTTTGTGAAGCTCTTTGTTTCTGGTTAATTGTGTTATTTTGGTCCCTGTTTGTGTTGTGTAAG GCTTAATTTTTGTGATGTTAGTGGATAAATTGACATGTTTTTAGTGGTTTGAAATTGTGCTCTGTTTGGTCACTGATATG AAATGAAACAAAACTGGGATAATTCCAGTTTAATTTGTTTGAATAAAAGGCTTTCTGCTTGCTTTGGTTCAGGGAAAGAA ATATATTGGGATAATGTGTGTCTATTTGCTACCCGTTTGGATGCAAACCAAAGAGCGCTTATTGAAGCTTATTTAGTGCA TTTTCTAGCTTCAATAAGCTCTTAATCCAAACTTATTGCAGCTTATTTACTGATGTTTTTTTATTTATAAATTGTCTTTA GGAACCAACATGGGAGGGGGGGGGGGGGGGAGAAGAGAGATCTTTGTTTGCAGGAACTGGACTAGAAACTTTTAAGGCGA AAAAAGAAGAAAAAGAACTGTGATTGTTTTATAAGGGTTCCTGTCTTGTTTTCAATTTCATCAAGAATAGGATGGTGGAT GCACAATGTTATTGGAGTAATGTAGTAATTTGACAATATTAATAAGAAGAAAAAACAGTTTGTTGGGGAAGCTGTAGTTT GTTTCTTAACAAGTTGGATGAATATTGGGGGAATGATTCCGGTTTCTTTCATGCTACAGTGCAAGGACTATACATTTCAT ATCACAGTATAAATATAATTAGTATCTGCTTTTGGCAGTGGTAGCAGATGTCCTTCACCAAACAACTTTCCAAAGAATAT CATTTGTTATGTTCATAATGATATTATCATGTTACATGACATCAAATGCCTTCTTATATGTGTTCAGCTCTTTTAGCACA AATTACCCGTGTCTTGGTTAAATTTAGTTAGTCGAATGCGTATGCATGTGAAAATATAGTATTGTATAGGGTTAACATGA AAAAGAGAGCAAATCTCTTCTTAAGAAATTAGGAAACTGATACAGGATAAGATGCCAGAAAGCACTGTTGTTATTTTGCA TGTTAGATTCTAAATAAAGAACTGGATACTGAAGGGAAGTTTCTTTCATATGCTTTTGATATAAGGTAGGTTTTGAATGT TATTTTCATTTGACTTGTTCATAAAATCTTGTTTTTCAAGTTCTTAAGATATGACATTGTCAATAGCACATGTTTAAGTA TTCTTTGACTCGCTAGATTCATCTAATAGTTGAGTAAAAAAACTGAATATTCATCTTTCATTGGTAAAAGGAAACATATT GGGTAGGGAACTGGTGGTTGGATAATGATTGGTTAAACATGACATGATAAGGAACATGCTTTCCGCAGTCTGTCCTTAAA CACAGTATTAATGTGCTGCTTAGATTAGGATATGTCAGATTTATAACCAATACTTTCCATGCTTTAAATCCAAGAGTATC TGAGCACAGTGTTATGGTGTATGATATCCATAATCCCTATGGATCATTAGATATTTAGCCCAGCTGGCAACTGGAAATAT TCTGAACTGAAGTGCCATGAGAAAGTAGTACTTATTGTAGTTGTTTCACTGAATAGTGTGTTTGGATCAATTTCTCTTTT CTTCAAATCAATTTTGACATTCAGAAGCTACTCACAGAAGCTTCTCTCCATAATTGATTTTGGTTTTAGAATCAATTGTA CAAGAATTTCCAAACACGCGTCTTTCAATTTTTTTTCCAAACATGCACCGAGTCACTCTTTATTATTTAGATTATGGAAG CTAAAAGAAACATATTACTCCATTATTGAACTTGGGAGTTGGGTCATATTACCAGATGGAAACTGGCATTTTGCTACAGA ATGGAGTTTGATAATTTATACACATTCTCAATACTAAATTTATGTCATTATATGTCATTAAATAGATAGTCTAAAAAAAT TATCTATTATATTTGGATGGTAAGAAAAGTTGTATGGTTTGCTAAAACAGTTACGGCAACCTATTGTGTCTGTTGAATCT CTAAATATTGTGCTAATCTTTATTTAGTTAGATGGTCCTGTTCACTACTATCACATTTAATATCAACTTAACTCTCTTCC TGGAAGATCTGTATAACTGCCCCTCTATTTTATTCTTGTGAACCTAAATGGAAGAGAATACCATACTCCATACAAGGGTT ACAAATAAAATGCAGCTTAAGAAAGGGCCGCTTGCTAAGTTTTGTGGTTTTTGTGATATTCTATCGTTCTAGATTCATTG AAGATCAAAATCCTATTACAAACCATGTTTATATTTCAAAGAAAAAACATGCTTAAGTTCAAGGCTCACATGCATAAATA TACAATCTCCATAGGAAGCCTTGTTACAGTAGCAAGGTTATGGCAACAACAACAACAACAACAAAAACTTTTCTGATGTG ATTGAAAGTTAAGGTTTCAAAATAAAGCTTGTCTAGGAAATCTACTGTTAAGTGGAAAGTCTTCAATTTTCTGTCTGTAG TTTGTGTTTGATGTTGTTTTCATGTTCAAATTCCAAAAATCTGATCTTTCTGGGTACTTGGATGCAGATGTTGGAGATCA GGGACTTTTCCACTTTGTGATGGAAGCCATGTAAAGCACAACAAAGCCACTGGGGATAATGTTGGACCTCTTCTTTTGAA AAAATAAAATTGTGATGATTTTAGCTTGTGATATTTAAGAAATAAAATTTGCAATCCATGCTTTTTGTGGACGAGACTTG GTGCATGTTTGGATACAAATTGAGTGTAATGTGAACAATTCACTTTTTACAACATCCGTTTGCTCTTATGATAACGAATA TCCAAACATAGCCTTCTTGAATTCCTGTCTTTATTTTTCCATGATGGATCCTGATTCAGGATTTAGGAGATGGTTACATT TTCTTATGTCCCTTTGAGTTTGGAATTTACATGCTCTACAGTTCGAAGGCAGCTAGCTATGATTGATAAACTTGATAGTT ACTTTTGTTTACTTGACAATAATTTCTGTCCTTATACTGTTCCGCATGTGTACTTTTAGCACTATACCTATGAGCAGCTT AAAGGTTCATTCTATAACCTAG
CDS sequence (LotjaGi2g1v0158700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTGTTCTGAGCCACGTTGGTGCAGGTTTCTGCCATGGCATAACCCCATTGAAAAGGGGAATTACAGCTACCCA TTTCAACCCTAGTTCCTTCAGTGGTGGTGTTGATTGCAGGAAACCAAGGCGTGTGGTGCTGGTGAAAGCAGAAGCAGAGG GTGTTGGCATAAACCCAGATATCAGGAAGACTGAAGCGAAAGTGGTTGACTCTGTTGTGATCACTGAACTTGCCAAGCCC CTCACTGCTTATTGCAGATGTTGGAGATCAGGGACTTTTCCACTTTGTGATGGAAGCCATGTAAAGCACAACAAAGCCAC TGGGGATAATGTTGGACCTCTTCTTTTGAAAAAATAA
Protein sequence (LotjaGi2g1v0158700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESVLSHVGAGFCHGITPLKRGITATHFNPSSFSGGVDCRKPRRVVLVKAEAEGVGINPDIRKTEAKVVDSVVITELAKP LTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 118 | 81 | 1.2E-41 | – | |
| PANTHER | 38 | 118 | 81 | 1.2E-41 | – | |
| Gene3D | 46 | 118 | 73 | 2.1E-25 | ||
| SMART | 67 | 106 | 40 | 7.0E-9 | ||
| Pfam | 72 | 100 | 29 | 9.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. | ||
| Molecular function | 2 iron, 2 sulfur cluster binding | Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. |
Expression pattern of LotjaGi2g1v0158700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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