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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0162400 |
| Transcript ID | LotjaGi2g1v0162400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT4G10340.1 light harvesting complex of photosystem II 5; Swiss-Prot: sp|Q9XF89|CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic; TrEMBL-Plants: tr|A0A067L139|A0A067L139_JATCU Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0162400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:56826761..56830667) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATTACAAAAACAAATGATAAAACATGTTATCCAAAACCAAGCAATCTACCAGCTCAGGAGCCACCCACATCAGCAA CATCATCTCCCTTGTATCAGGTATTAACCAATCAAATCCTTGCATTGGATAACACTCTCTAATGTAGACCAATCAATGCC CATGATCATGAATCTGACGTGGCATGTCCACATCCACCAGAGCTTGCATATAGTAGTATCTTGCAATTTGGATCCTCATC ATACTTCATCTACCTGCTTGGCTTGGCAAATTCACCTGAGTTTCTGAGGCTTCTCCCAAAAATGGCTTCCCTTGGCATGT CAGAAATGCTTGGAAACGCCATCAACTTCGGTGGCGCCACCAGGTCAGCACCATCTCCCTCTAGCCCCGCCACCTTCAAG ACAGTGGCTCTTTTCTCCAAGAAGAAGCCAGCACCAAAGCAGAAACCTGTTGCTGTTGCTCCTGCTGACGAGGAACTCGC CAAGTGGTATGGTAAGTCCCCAACAACAAATTCTCTCATGCTTGTTTTCTTTTTAAGTTTTGACAATGCTCTCACTTGAA AAGGAAAAAAAGAGAAAAAAACATAGTAGTATTACAAAGCTCCTGCTATGCGCGATGTCCAGAGGGGTCGAACCACTATG CGAATCTAATGTAGGTAGTTTTACCTTGCATTTTTTGCTAGCGGCTGATTGTACGGCTTAAACTTTGTGACCGCAAAGTC AGATGGCAACAACCTTATCCCATTGCGCCGAGTCTCGCCCCCTTAAAGGAAACACATGTTAAGAAATATAATTGATGTTG TTTTGAACATTTACAACATGAAAAGAAAAAATTCTTTTTAAATCTTGACAAGGAAATAGTTGAAGTTAAGGAGTTATTGA AGGTTGAATACTTGTTGCTAAACCTATGCTTGTTTCTATTTGGTGCCAGGTCCTGACAGAAGGATCTTCTTGCCTGATGG ACTCTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGAGTATGTAGCCTTTCCTCTAGTCCCCT TTAAACTAACTCACATTGACATGCAAACACAGTAGTAAACTGTATTTTTGAAACTTTAGTACTTGTTTTGCTTAATTTGT TTAGTTGTATCCATGCAGCTATGGTTATGACCCATTTGGTCTTGGCAAGAAGCCAGAGGACTTCGCCAAGTATGTCTAAC ACTCTCAATATATCTATCTATCTATCTATTTGTCTACGTGTGAGTGTGTGTGCATGCTTGCTTATGTTACAGTAACTGTG TGGTAATGTTGAGGAAGTGAAATTGGTGAATTGATGTGCAGATATCAGGCATTTGAATTGATTCACGCCAGATGGGCGAT GCTTGGTGCTGCCGGATTCATCATTCCTGAGGCCTTAAACAAATATGGAGCCAACTGTGGTCCTGAGGCTGTTTGGTTCA AGGTTTGTGAGCTCTATATAGAACTCTCACTAAGTCCAGTTTATTAATACATTTTTTTACACTCAACAAATGAAATTCTT AAGACCACACCACAAGTACTAATGCTAAAGACATTTAAAATTTGAATTTTATTTTAAAAGACAAATTCTATTGGGTATGA TGTATCTTTCCTTTTCAGTTTGGTTTCAAGGTTTCTAATCCTAATTATTGTGCAAATAGTCCAGTTCAATATTCATTACA GTTACTCACTTTCAATTCAACAGATAGCAATATAGCATATTTCAAGGATTTAAATTTTCTGAATTAAGGTATTCACTTTA GAGTGGAACTGGAAAGTGATTAGTTATGGTCAGTGATTCAAAATAAAGGTTGAGACCTAAATAACTTCTTAACTTGTTAT ATGTATGTATGAATTTATGATCACAATATCAATTGTTGATTTCTCATTCAATGATTGTAACTCGTAGCTTCTTCCTCTAA AGTGAACTTTCATTCATTTTATAGGAGTCAAATTCTAACTCCCTTTATAGAAAATTTGATGTTTTATTGTTCACACTACC AATTTAATTTTCTTTATGGAAACAATGCAGACCGGAGCTCTTCTTCTTGATGGGAATACGTTGAACTACTTTGGCAAACC CATCCCCATCAATCTCGTTGTTGCTGTCGTTGCTGAGGTTGTTCTTTTGGGAGGTGCAGAGTACTACAGAATTACTAATG GACTGGTATGTGAATTCTCACTTTGAATACTTATCTGCAGTCATTGTTAATAAATCTATCTCAACCTTTCTTGTTTCCAT AAGGTTTATAACTGAAGAAAGGTTGTTATTGATCCAAATAAACCATCTCTTGTTAGTTGTTACTATTTTTACATCTGAAT TAAGTGCATCTGGGAATGCACATTACCACTCTGTTCATAAATGTGAAAGAATTTGTGACTGTTGAAAAGTCTCACATTGA CTATAGATATGACTAAATAAGCCTTTACATATGGTAGTGCAATTATCAACCTGAAGCTAGCATTTAGGGTAGAGTTGAAC TTATCTCGAATTCTAAGAGTGACAATATGCGACCAGTTGACTTACTTCTTGTGTGACTATTTCGAGCAGGATTTCGAAGA CAAGCTTCATCCAGGCGGTCCATTCGACCCGTTGGGGCTTGCAAAGGATCCGGACCAGGCTGCGCTGCTGAAGGTGAAGG AAATCAAGAACGGCAGACTTGCTATGTTTTCCATGCTTGGTTTCTTCATCCAAGCTTATGTGACCGGAGATGGTCCTGTT GAGAACCTTGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCCGGGAATGCTGAGAGAGCTCC AACTCTGTGAATCAAATCAATCATCTTCATGTGTTTTTCTCTAATCTCAAATGTACAATACATCATCTCACTGAGACCTT ATTAAGGCATTTTGCTTTGTTTCTTTGGAAGCCAAACTCACTCTTAATTTATGTAGTGCCTGAATAGTTTGGCCTTGAAT TTGAGCTTTGCATCACTGATCTTCCATTTTCTAATTAAATGAATTCATACATGGAAGCTATTTTCTAATTTCAAACATAA TGCCGGATATCTAACCCAAAAGACAAAAAAAAAACTTCATATTGAATAGTGTGAAATTCTAATGGGGAATAGCATATGTG AGGTTCTCATTCTCTGCTTGATCGTTCCAAATTATAGTTTTGCTAATGTTTTGGACAGATCGTATAAGCTTTTATTTACT TATTTATGAATTGTCTAGTTTCAGTGTGAATGATTTCCATAAGTACAGTGGATCAGTCAATGTATATCTGAGTTGATACG TGCTATAGTCATCGTTTGACAATAACACAAAGAAAATCATAATAACAAGGAAATGGTATAGTAAAAATCTAAAGGGAGTG GAAATGACATGATAGTCCACCAATATGATACATTATACTATGTCTGTATGTCACATAAAATTTGTACAAAATTGAGGCAA AAGCACAAATCATAAACTAAAAGAATGAATTATGTTACATATTTTTGGTACAAGATGATAAGAAAAGGAAAAATCAGGAA CAAAAACTCCTGAGCTACCAACTCTGCCTTGCTCCAAACTTGGCTAGATAATCTGCACAGAAATTACCTTCTCTCAAAAT GTGGATCACTTCCCCTTGTGAGTCTCTCCTAATAAGTTCTCTTACTTCGTTTTGTTTTTCTTTTAATTTATAAATCATGT TCAATTATTGATTAATCATAGCTTTGTTGTTTCTCTTCCATTAGAACTTGCATGAAGATCTAAGGTTCCTTTATTTGAGA ATTTTGCCACTATGCGCTATTTGTGGTCAGGGGTCAAATGAATTGGCTGAATATAAGATATGAATTTGCATATGCAACAA ATTCAAGTCTAGGTTCAAATTCGACTTCAAATACATTTTATTAGTTAGAAATTCTGTAGATGGAAAG
CDS sequence (LotjaGi2g1v0162400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCTTGGCATGTCAGAAATGCTTGGAAACGCCATCAACTTCGGTGGCGCCACCAGGTCAGCACCATCTCCCTC TAGCCCCGCCACCTTCAAGACAGTGGCTCTTTTCTCCAAGAAGAAGCCAGCACCAAAGCAGAAACCTGTTGCTGTTGCTC CTGCTGACGAGGAACTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCTGATGGACTCTTGGACCGATCTGAG ATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGACTATGGTTATGACCCATTTGGTCTTGGCAAGAAGCCAGAGGACTT CGCCAAATATCAGGCATTTGAATTGATTCACGCCAGATGGGCGATGCTTGGTGCTGCCGGATTCATCATTCCTGAGGCCT TAAACAAATATGGAGCCAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACCGGAGCTCTTCTTCTTGATGGGAATACGTTG AACTACTTTGGCAAACCCATCCCCATCAATCTCGTTGTTGCTGTCGTTGCTGAGGTTGTTCTTTTGGGAGGTGCAGAGTA CTACAGAATTACTAATGGACTGGATTTCGAAGACAAGCTTCATCCAGGCGGTCCATTCGACCCGTTGGGGCTTGCAAAGG ATCCGGACCAGGCTGCGCTGCTGAAGGTGAAGGAAATCAAGAACGGCAGACTTGCTATGTTTTCCATGCTTGGTTTCTTC ATCCAAGCTTATGTGACCGGAGATGGTCCTGTTGAGAACCTTGCAAAACATCTCAGTGACCCTTTTGGCAACAACTTGCT CACAGTCATTGCCGGGAATGCTGAGAGAGCTCCAACTCTGTGA
Protein sequence (LotjaGi2g1v0162400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLGMSEMLGNAINFGGATRSAPSPSSPATFKTVALFSKKKPAPKQKPVAVAPADEELAKWYGPDRRIFLPDGLLDRSE IPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTL NYFGKPIPINLVVAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMLGFF IQAYVTGDGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 277 | 276 | 1.2E-172 | – | |
| PANTHER | 2 | 277 | 276 | 1.2E-172 | ||
| SUPERFAMILY | 62 | 270 | 209 | 1.03E-59 | – | |
| Gene3D | 69 | 280 | 212 | 2.0E-97 | ||
| Pfam | 82 | 243 | 162 | 7.2E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi2g1v0162400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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